nectin4a (LOC106608750)


Basic Information

Item Value
gene id nectin4a
gene name LOC106608750
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45455659 ~ 45474914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957964.1
CATTGTAATAGACCACAGACCTTTAGCCGTATTCAGGACTATCAAGGAGCAGTCGGGCGGACCACTCCACCGAACCGGGGAGAATGACATCACTCCTGGGCCGACTGACACCGCTGCTGTGGATCCTTGGGAGTTTCATTGCTGTGGTGCAGGGGGACTTTGAGGAACAATCTCCCGTGCAGTCCTTGACCGAGATTGAGACCCGGCTGCCCTGCCGGTTCAAGGTGGAAGTGGGCCAGGTGGTGGTTCAGGTCACATGGACCAAGGAGAGAGCAGATGGTACCAAGGACCAGATCATCACTGTACACCACACTGACGGACAAACAGagTTTGGTCAGTACTCGGGGCGTGTGCGGTTCGGCAGCAGTGAGCCCACAGTGGACTCGTCTCTGATCATCATGAACACTGTGGAGTCAGATGAGGGCAGGTACAACTGTCACATCAGCACCTTCCCCTCGGGGAACTTTGAACAACAGCTGTCACTCACCGTGTGGGCCACGCCCATCTCCTCCCTGGACCCTGTGATTCTTGTCGAGGGCCAGTCCTTTCGATTGGCTGCCTCCTGCCGCTCCGTGGCCCGCCCCCCACCCATCCTTAACTGGGACACAGACCTGACGGGCCTGTCACAGAATAGGAGTTCGGTGGGCGGGTCAgtctccacccacttctccctgCACCCCCTGAGGAGTATGAACGGGATGAGGCTGGACTGTCTGGTGAGGCACCGTGCTCTGAAGGAACCCCGCAGGATCACCAACAACCTGGTGGTGCACTATCCTCCCAATGCAGAGATCTCTGGGTTTAATCATAACTGGTATGCTGGTCTGGAGGGAGCTTCCCTCAGCTGTGTCAGTGGAGGAAACCCCAAACCACAGAGTTTCACCTGGACCAGGAAGGGTGGAGACTTACCAGAGGGCGTTACGGCAGGGAATGGATCCCTGATGTTCAATAGGCCCCTTGGTTTGACAGACGCTGGTATCTACCAATGTGTGGCCTATAACGTTGTGGGGACCGGGAAAGCAGAGGTGGAGATCACTGTGACAGAGTTTCCTCAGAAGCCGGTGTTTTTCAACAGTCTCCTGATGATCATAGTTGGCGGGGTGGCTGGAGGACTGCTACTCATCATGGTCATCATAGTAATCTCAGTGACCTGTCACCACAAACGCAAAAACAAGAAACTGGAGAGAGAATTGACTATGAAGAAggaggaGATCAGTACACTCTCCAGGCAGGCCTCTTTCAGGAGAGTCAACTCAGTCAGTACGGATGCAAGAGGACAGATGGAGGAGAATATCCCTCTCAGAGTGGAGGGGACACTGCGGACCAGTCTGTCCTCTTTAGGGGATCCAGGGCGCATCAGGGACAGTCGCTCTACTCTGGTAGGGGGAGGTGGACTAGACTACCTGGGTCGACCTGTTCTGAACAACTCTTCACGAcgagggagggagaacagagccatggacagagaggaggaaaacaGACTTAGGGTGGAGTCATACGTACGGAATAGCACTATGTCTTtgGGAACCCGTCTCCACCTGCCAATCCAACCCTCTCCCTTCCCAATGGAACAGTCCACCAAGCTGCTGAGGTCCCTGAACGGCAGCGTCATCATCCCAACAGAGGGGGGTTTACATGCACGGAACTCCCCTCTCAGCTGCAGCTACCCTCCTGTCACAGACGACGAACAGGAGGAGGGTGAAAGTGTGGAAGGAGAGCGGGGGACAAGCTCCAGGATGAGTCGTTTAGATCAGGGGAGGTCAGAGGACCAGGACAACAGTTCTCAGATCTCAGACGCGGAACGTGGACACAACCATCACTTCCAGCAGAACAACGGAACGCTGAGACCCAAACCCCGGCCCAACGGCATCACATCCCCACACGCCTCCCTCATCCATAAGGCCCAGATTGTATAGATGGGTCCGGGCAAGAGCTGGTGACGCACTATACGACAAGGTTTGGTCGTGACTTTGGGATAGGCGCTTGCCGGTGTGGTGGCATACCCCGGTGGCAGCCAGTTTACCTCCTTTTCACTTCTAGAACATCCCTTGCCTTCGCCTCGAGCTCTCAGACATTTTTGATCAACAGGTAAAGGTTCTTATTGGTGAACAGATAACGCTTCTGATTGGTGTAGAGATACAAATAAGTAACACATACGTTTCACAGGAGAGGAGCTGGACAAATGAAAAGCTTATGAATGTCAGGTTGCACATAGACCGAAGTAGTCATAATATTTTACTGTATATAATATCACAGCAATAACGATCACTACAGGAAGCATCAAGAGGACTTTTACATGATTTTGTACCCTAAAAAgacttatttttttacatttatttgtattaAGACTTGATGACAGGACACTGTAACCGAGAAACAAGATTTGAATATCATCAAATGCAGTGACTTCTAACTGAACTCAGCGAAGAGGCATTCAGCAGAAGCACCAATAGCGCTTGCCCGTTTGAAAGAATCCATGTGTAGGTGAACTTTCACCCTCCTTTCCTCTGGATGAGGGGATACAACACATACGACGGATCTGTTCACCCTAAAATTTAGTCCATCTTTCTAACTTTAAGTGTGGCAGGGGTTTATTTAGATATACTCCTCCTTGCCATGAACCTCGATGTgcacaaacaacaacactttgaAATCGCTATAGTCTTTGATGCCAAAAGCCAATGAGACTGCATTTTAgctgtggaaaaagtacccaattgtcaaacttgagtaaaGTAAAGATTACTCAAGTGaaattcacccagtaaaatactatttgagtaacagtatttggttttaaatatacttaagtacattttagcaattccatttatttttttatacttaagtatcaaaattaaaagtattactcatttcaaatgtcttatattaagcaaacatgACACGATTtgcttgtttttttatttttatgtactgatagacaggggcacactccaacactcagacataatttacaaacaaatatttttttgtgagtttgccagatcaaaggcagtagcGATACCAGGGATGTtcccttgataagtgtgtgaattggaccattttcctgtctggcTAAATGTTCAAAATGTgaagagtacttttgggtgtcagggaaattgtatggagtaaaaagtacattattttcttacggaatgtagtgaactaaaagtagtcaaatataaatagtaaactacagatacccaaaaaactacttaagtagtactttaaagtattttttacttaagtagtttacACCACTGCTTTTTAGACAAGAGGTTAAAACAGCTTTGATATGAAATGTTTTACACAACAGAGAGATCCTATGTGAAAGTCTACTAAAACTGAGGATGTAAAAGCATTGTTCTATTTTCTTACACCAGACAATCAAACTGTTATATGCCTATGTTTGTATACATACAGTTAAAAGAGCCTTTGCTTTGTAGGCCAATATGAAGTATTATTATGTCTGATTCTACTGTATTATAATTCATTGAGtgcatccgaaatggcaccctatcccctacatagcccctggtcaaaataagtgcaccaTATCGgcataggatgccatttcagCCGCAGACATGCTATCGACCTACATCTCTATAAGTGGGTTTCTTTCACGCCGTATTCCAGTAAATGGCTTATTGTAGTTCcctggtatgtactgtatgtatgggatTCATGTGTGGAACTTTGTTGTTTTAATGCACATGTACTTCTTTAGGAGAGTAGCAATATCGTTCTGTTTTCTATATCAATTGTTCCGTTGTATAATACTGTAACACTGATCTTTCTGAGTGAACGTAATACCTACATAGAATGTAAGAGGTTGGAAGTATATACACCGCCCCCTGGTGTGCACCAGTGGATAGTGCAAGAGAGGAAGAAAGTTCAGGGATCTTGTTGTAAGGTCTGCAGACTGAGTTTTACCTGGCGAGGTCACGTGGTCATGTGAAAACCCCTGACCCAACCACGTGCTCCATTAGCCACAACTGGGGCCTGTTCAGAAGGATGTTGATATAGAACGTTCAGATTCAGAAATGTATCATGTCGGACAGACATGATTGGTAGAATAAGGAATTGTGTCagctctattcattctatttctatctgcaacaacTGTTTCACATCACTAAAACCATCCCTGCATATCTTCTAAACATGGAGATGTGTTCATTCAGGGAGGGTGTATGTCTGCTCAATGTATTATTGTGAAATAAACTTCTTGAGGGTTTGAG

Function

NR:

description
nectin-4-like isoform X1

GO: NA

KEGG:

id description
K06593 PVRL4; poliovirus receptor-related 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957964.1 True 4244 mRNA 0.46 12 45455659 45474914

Neighbor

gene id symbol gene type direction distance location
fcer1g LOC106608748 coding upstream 5947 45444361 ~ 45449712 (+)
ndufs2 ndufs2 coding upstream 11462 45432580 ~ 45444197 (+)
kirrel1a LOC106608745 coding upstream 36486 45379310 ~ 45419173 (+)
trnar-ucu-9 NA coding upstream 77577 45378009 ~ 45378082 (+)
il13ra1 i13r2 coding upstream 87447 45359504 ~ 45368212 (+)
LOC110500870 LOC106608752 coding downstream 10333 45485247 ~ 45517233 (+)
si:dkey-38p12.3 LOC106608755 coding downstream 69602 45544516 ~ 45565742 (+)
si:dkey-19b23.7 LOC106608757 coding downstream 167947 45642861 ~ 45648249 (+)
LOC110500572 LOC106608759 coding downstream 202747 45677661 ~ 45686049 (+)
LOC110500573 LOC106608761 coding downstream 213536 45688450 ~ 45702662 (+)
G1742371 NA non-coding upstream 28712 45422297 ~ 45426947 (+)
G1742308 NA non-coding upstream 192045 45263230 ~ 45263614 (+)
G1742298 NA non-coding upstream 211483 45230536 ~ 45244176 (+)
G1742167 NA non-coding upstream 410014 45042866 ~ 45045645 (+)
G1742379 NA non-coding downstream 5561 45480475 ~ 45521688 (+)
G1742416 NA non-coding downstream 47213 45522127 ~ 45522440 (+)
G1742381 NA non-coding downstream 50463 45525377 ~ 45525723 (+)
G1742383 NA non-coding downstream 51438 45526352 ~ 45526612 (+)
G1742420 NA non-coding downstream 59047 45533961 ~ 45534179 (+)
LOC110500529 LOC106608720 other upstream 983095 44461338 ~ 44480565 (+)
LOC110500528 tmem256 other upstream 1004127 44446186 ~ 44451532 (+)
G1740752 NA other upstream 1242429 44212786 ~ 44213230 (+)
G1740453 NA other upstream 1928933 43524736 ~ 43526726 (+)
G1743043 NA other downstream 164382 45639296 ~ 45639742 (+)
G1743077 NA other downstream 232228 45707142 ~ 45709950 (+)
G1744645 NA other downstream 1688990 47163904 ~ 47236823 (+)

Expression


Co-expression Network