si:dkey-38p12.3 (LOC106608755)


Basic Information

Item Value
gene id si:dkey-38p12.3
gene name LOC106608755
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45544516 ~ 45565742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957971.1
AGGAAATGAATAAGCATTACACAGTAAATCATCTGCGTCTATGCAATTCTGAATTATGGGCAAAAAGAGACCTATAGTCATACAAAAAGAAAGAGAAGATCAATATTATAAAAAGTAGGGCTATTTAAAAGGAGTTAGGCTATTTAGTAATTCCTGAAAATGCTTCTCAAGCACTTCTATTATAATATCTCTCcaccagtgtgtcagtgtgtggttTTGAAAGGACGTTTACTCTATTGAAACAGCGAGTTGTGTTCAGTTTGTGTTGTGtgagatgagagggagacagaggaaagagagggtggagaaatCTCGGGGGGGCACAACCCCACACCGGCAGGCCCACGCACGCGAACGCAAGCAGGAAACAAAGAACTGGCAATGATGAAATCGCTCCCGAACCGCATACTAGGATCTACAGCGAAACAATAAAGAATACTCAGAGAACACTATCGTTCGTTGTGTTATTATTATCGTGTATGTTTAGACTACATTGTATTTTATGGATTTCCCATTTTTGTTGAACTAGTGAAGTTGATGCATAACCTGACTAGTGTAGCCGCGACTGATTAAATATACTTGTTTTTTTAATCGGAGGAGGACGATTTATAATCGTTGACAGGGGTTTTGTCAAGGCAACAATTTTACATGAACTGGATTGTCGTTGGATGATTGTTTACGGACGTGGATGCGAATCTACTGGTGAAAATGACACATCCAAACTGACCTTTGACCTGAAAGCCTGACCTCCTGACAGGTCAGAGCTCAGATTGGAATACTCCCGGAAATACAGACCACCCTCCAATATGTCCCTCCCGGAACCTTCCATACGCCCCACGTCCCCCTTACCCTCCAGACCGGAGGCCAAACCCCGGCCCCCCATCTCCAGGAAACCCCCTCCTTCCAACGgatccccctccaccccctcccaacTCGGGGAGAGGGGCAGCACAGGCAGCAATTCCAGAGGTAAAGTCAAGAGCATAGTGAGCAAGTTCAGTCACCCAGAGACTACACCTACCACCAGAGGATATGCTACACCAACTGCCAATGGCACCACCGTCAATCCTCCTCTCCGGACCCGAGGGCCCAGGAGGGCCCCCACGGTCAAGCCCAAACCGTCCCGTGCCTCCATCCAGCAGTCTGCGAGTCCAGACCAGGCCCCTCCACTGCCCATGAAGAGGAGCCGGATCCTGCGGCAGCAGAGCAACCAGGCCAAGAGGGACacccctggaggagaggagggcatcCCAGCCAGTCGATCAGcaCCCGACGGAAAAGAGGTAGAGCTTCAGCTGATTGGAGGAGTGGAAGTTGAGCCGGAGCACGGTTCAGGCACGCCCCTTAGCCCATGCTGCGACCAGGACTGCAGTTGTGTGTGCCACCTCCACCGGCCCGGCATGAAGCTGATATGGGTTCCCATCAacaaggaagaagaggaggaggaggaggaggagattgtTCTGGAagaggaaacagaggaggaggagagaggaatggagggggagagcgaggcaggggatgaggaggaggaggagggagggagcggtTTGTTGAGTGAGGAACGGGCAGGGCAGAGATTCAAGAAGGCAAAGTTTAACCAGGTTCTGGATGTGATGATAGCTAAAGGGAACCGGAGAAGGTCAGACCCAGGATCCCAGGTCATTCTGGCCTCCTTGGCCTTAAAACGCTCCCAGTCACCCCCAATCCCCCCTAAAAGAACCCAATCTCCCCCAAGCCATTTGAATGCCTTCATAGAGGAGGAGGACTCTATATATGAAGCTACTCTACTAATGGTGGAGCCAACACCCAGAAAGATCTGTCAAGAACTGGACATTAAGAAACCGGTCCGTTGGTCAAAACTGTCCTCCAGCAACTCGGAGGAAAACACTTCAATCCAGTCCGATTCGGACCCATCCCAAACCCAGACTACCGAGGACGCCCCTCCGGCCATCCCACCTCGGGTACCCCTTGCCCAGGACAAGTCCAAAACACCTGGCCACAACCTAACGCCCGTTCACAGGGGGGGTATCGCCTTACCTCAGCCCACCGCGGAGGAGTGGCGCTCCCTGCACCCCTCATCCCCCAACCATTCCTCTAGTCCCATAGTACCCCACCGGgtggcccccccaccccccaccagcCCCCTGCTGCCCCACCGAGTCCCCCCACCTCAGCCCCCCAAAACGGGCAGGGACGACAGGAGACTCAGTAACATCTCCGGCCATTCCATCAACCAAGCTATAAAAGAACAAGAGGAGGATGGATGCActaaaggagagaaggaggacacAGAGGAAGACTGTACGCCTGTAGCCCCACCCAGGAGAGGATCCTATATTGACTGGGAGTCCAGACTGCAGGATGAGCCTCTGTACCAGACGTACCGCGCCACTGTCATCACCAAGGAGATCCGGCGCCAGACGGTGTGCCGCAACATCAGCAAGACTAGTGCCGACTACCACATGGACTGGACTGCCCGCCGTGGTGGTGTGGGCATGGGGTCGGGTGGCGTGGGGGCGGTGGGCAGTGGTACTATTCCATTGCCCACCCCGGGCCAGAGCACCCTGTGGCAGGACATACCAGGAGTACGGGACAGTGGGGTGCTGGAGACTCTCAGCCCTGAACAGTGCAAGTACCAGGAGAGTATGTTTGAGGTGTTGACATCGGAAGCGTCGTACCTGCGTTCCCTAAGAGTTCTCACAGAACACTTCCTGGATTCCCGGGATCTGGACGAAGCGCTGATCATCCGGGACAGGAAGACCCTCTTCTCCAATGTCCTGCGAGTCCGGGAGGTCAGCGagaggTTTCTGAAGGACCTGGAGGACCGAATGGACGAAGGTCTGGTGTTCTCCGACATCTGTGACATCATCCACTACCACGCACAGCACAACTTCCCGGCCTACATCGACTACGTCCGCAACCAGATCTACCAGGAGAAGACCTACACATCCCTCATGAAAACCAATGTGGCGTTTGCCACGGTCATCACCCGTCTGCAGGAGTCTCCTCAGTGCCAGCGGCTGCCATTCATGTCCTTCCTGCTGCTGCCCTTCCAACGAATCACACGCATTAAGATGCTCATCGAGAACATCCTGAAAAGAACAAAGGAGGGGACTACAGAGGAACAGACCGCCTCCAAGGCCCTGGACTCTGTTTCCAAGATCATAGAGGAGTGCAACACCCAAGTGGGGAagatgaaacaggtggaggagcTGATCCACCTCTCCAAGACGCTGGAGTTTGACAAGCTCAAGGCCATCCCCATCATCTCCCAAACCCGTTTCCTGGAGAAGCGTGGGGAGGTACAGGAGATGGCTAAAGGGGGCAACCTCTTCAACCTGCGTCCCAAGTTCACCCCTGTCTACCTCTTCCTCTTCAACGACCTGCTCATCATCGCCACCAAGAAGGGTTCGGAGCGTTTCGTGGTGATGGACCACGCCCACCGTTCCCTGGTCCAGGTTCAGCCAATAAGAGAGGACCAGGCCCTGAGCCCTAGCTATGAACACTGTTTCTGTCTGACTCTACTGGAGAACCACCAGGGACGCATGATAGAGAGGCTGATGAAGGCCTCCTCACAGTCTGACCTGCACAGGTGGATAGCAGTGTTCCCTAACCCTGGTAACCATGATGGAGATCAGGAGGAAGTCATCTATGATGACTGGGACTGTCCTCAGGTGCAATGTGTGGAGCAGTACATTGCTCAGCAGGCTGATGAGCTCACCCTGGAACCCACGGAGATCATCAACGTGGTGCGCAAGACCAACGAGGgtttgTACGAGGGGATCCGTCTCTCCGACGGACAGAAGGGTTGGTTCCCCGTGGAGAACGTTTTAGAGATCACCAACGAGCATGTGCGGCGACGGAACCTTCGGGAGCGCTACCGGGTCATTCAGGCCGCCAGCATCGTCACCAACAAGGTCAAGACCCTTCCATAATGTTGACGGAACGTCAAGGGAACATTCCAGAATAGTAAAGACCATGCCTTGAGGTCACCTTAATGGTGACAGAACATCAGGAGAACGTCATTCGAACGttgacaaaatgttacagaaCATTTAACTGGATAGGGGAGAGTGAACCAGTGCCTGCTCTGCATGCTCCCCTGAATAACTCTTAGCTGTAGATTTGAGATTTCTGAGAAGCGCTATCTCACTGTGGGTTTTGACTAGAGGCGGCTTGACATTTGCATAAAGTAGAgcagaaattgttttttttctctaccTGCCCGCTAGCCGGGTTCTCgccgttcaccttcccacagtTCCCCACACATTTCTCTGCGTGCCCTCGTTGAAAATGAATGGGGCAGAACTTGCGGAATTCATTGTTTGTGAAAACCCTACGCTATCATATCATGCAATTAGCATGTTTTCATTTTGTACAAATTACTCATTTGTTGGAAGTTGTGGGGGAATGGTTTTTTTTTAGGGAACTTTAAAGAACCAGGAAATGAAAAATATGGGAGGAGGATGATGTACTAATTTATTACAGGCAAACAAAAATGGACTCCTCTCTTTAAATGTTGAGTATGTATTTGAGTGAGAGTGTATAGTATGAGTGagagtgtatgtttgtgtgtgtgcgaacCTGCACCTAACCCCACACACTGCCATAGGAAAGCTCCAGTTGAAAAGTTCCCCTGCATCAATGTCAGTCAGCTATACCATACCAGTTTGCACGTATCAGGTGGTATATCAAGTATAGATCAAACTCTGAAGTGCCTTCCAATGGATTGTACTCGAAGCACAAGTCCTACAGCTGTTGTATCGTCGTCACTACAGGGTTGAATATATTTGACTGCCATTTCTGGACACAAAAAAGTCATAGCCAAGTCGCAAACATAATGTCAAGACCACAAAACCTGGTTGTTTGTGATGTACAGTAGTAATATTGGTAACATGGAGCTCTAGTGAAGCCATACTGTTATGATATCAACAGGTCTCTATTACTTCTTTATACAACGGGCGGGTCTAATACTGAATGCCGATTGGTTAAAACCATATTCCATTCCGTTTGTTTGAGTGAGTGGGTTTACTCTGGTTCAAGACCAGTGTTCTTATTAAAACTCGATCATGTTTTT
>TU1995371
ATTCCAGAGGTAAAGTCAAGAGCATAGTGAGCAAGTTCAGTCACCCAGAGACTACACCTACCACCAGAGGATATGCTACACCAACTGCCAATGGCACCACCGTCAATCCTCCTCTCCGGACCCGAGGGCCCAGGAGGGCCCCCACGGTCAAGCCCAAACCGTCCCGTGCCTCCATCCAGCAGTCTGCGAGTCCAGACCAGGCCCCTCCACTGCCCATGAAGAGGAGCCGGATCCTGCGGCAGCAGAGCAACCAGGCCAAGAGGGACacccctggaggagaggagggcatcCCAGCCAGTCGATCAGcaCCCGACGGAAAAGAGGTAGAGCTTCAGCTGATTGGAGGAGTGGAAGTTGAGCCGGAGCACGGTTCAGGCACGCCCCTTAGCCCATGCTGCGACCAGGACTGCAGTTGTGTGTGCCACCTCCACCGGCCCGGCATGAAGCTGATATGGGTTCCCATCAacaaggaagaagaggaggaggaggaggaggagattgtTCTGGAaga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957971.1 False 5083 mRNA 0.51 16 45544516 45565742
TU1995371 True 511 TUCP 0.60 2 45549117 45555589

Neighbor

gene id symbol gene type direction distance location
LOC110500870 LOC106608752 coding upstream 27283 45485247 ~ 45517233 (+)
nectin4a LOC106608750 coding upstream 69602 45455659 ~ 45474914 (+)
fcer1g LOC106608748 coding upstream 94804 45444361 ~ 45449712 (+)
ndufs2 ndufs2 coding upstream 100319 45432580 ~ 45444197 (+)
kirrel1a LOC106608745 coding upstream 125343 45379310 ~ 45419173 (+)
si:dkey-19b23.7 LOC106608757 coding downstream 77119 45642861 ~ 45648249 (+)
LOC110500572 LOC106608759 coding downstream 111919 45677661 ~ 45686049 (+)
LOC110500573 LOC106608761 coding downstream 122708 45688450 ~ 45702662 (+)
LOC110500577 lsmd1 coding downstream 178868 45744610 ~ 45755368 (+)
cnpy4 cnpy4 coding downstream 282444 45848186 ~ 45850007 (+)
G1742428 NA non-coding upstream 3877 45540429 ~ 45540639 (+)
G1742427 LOC106608754 non-coding upstream 4943 45539166 ~ 45539573 (+)
G1742426 NA non-coding upstream 5796 45538406 ~ 45538720 (+)
G1742425 NA non-coding upstream 7092 45537063 ~ 45537424 (+)
G1742424 NA non-coding upstream 7524 45536754 ~ 45536992 (+)
G1743002 NA non-coding downstream 13566 45579308 ~ 45606291 (+)
G1743003 NA non-coding downstream 14673 45580415 ~ 45606695 (+)
G1743004 NA non-coding downstream 15157 45580899 ~ 45626721 (+)
G1743007 NA non-coding downstream 15842 45581584 ~ 45627145 (+)
G1743008 NA non-coding downstream 16138 45581880 ~ 45592730 (+)
LOC110500529 LOC106608720 other upstream 1071952 44461338 ~ 44480565 (+)
LOC110500528 tmem256 other upstream 1092984 44446186 ~ 44451532 (+)
G1740752 NA other upstream 1331286 44212786 ~ 44213230 (+)
G1743043 NA other downstream 73554 45639296 ~ 45639742 (+)
G1743077 NA other downstream 141400 45707142 ~ 45709950 (+)
G1744645 NA other downstream 1598162 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2529025 48094767 ~ 48095119 (+)
G1746471 LOC106608612 other downstream 2759358 48325100 ~ 48363926 (+)

Expression


Co-expression Network