si:dkey-19b23.7 (LOC106608757)


Basic Information

Item Value
gene id si:dkey-19b23.7
gene name LOC106608757
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45642861 ~ 45648249 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577982.2
ATCCCTTGCGTGTGAGACAACACCCGAGAGATGAGATCGAAGAACAAGGGATCTTCCGAAATAATATCTATAATGTAGATTTCTGTTTTAAAAGAAAATGCATTTGGCAGATAATTGTATCACAGAAAGACGCATAAGATTCTGATGCAGAATACATTAAATTAAGATTAATGAAAAAGAGGGAAGGAATGATGCGTTTGCAGTTTAATCGTTTTATGTATAGGTGTGACAGCGCACATTAACGCAGTGCAAACGTGCTAAAATACACAGTTCTGGGTTTAGATTTTTACAGACAACAAGATGAGCAGCGGCAGTaagcgagagagagaacagaggaaaaaACTGCAGCACTTTCTGACAGACCTGGCCTTATTGGGATCATTGCAGGGTTTCCGGTACTTTCAACCTtggctgagggggagagaggagctaCTCCTGACAGTAGTCAATGAAGACCTGGGTTGGCGTTCCCCTGGGTTCATGGTGTCGGCAGCGTCCTCCTTCAGTAGCAGTTCCTCATCCAGCAGCACCAGTAGCACTTACAGCCTGGCTAGTGACGCCAGCTCCCCCCTGCCCGGGGACCACCAGGGGCCTCATCAAGGCCCTCAGGGGCCACAAAGCATGCCAAGGAAGCAGCAGCACTCATCACATGGGCCCAACCACCATGCCCACAAGGGCAGCAGTGAGGCCCATCTCCTACCAGCCTCCCCCAGTGAGAGGGAGATAGCAGTGCCTGAAGTGAATTGCACTCTTTTCCTATTGGCTGGCTACGCCAAGTATGGTCGCCCGTACGCCTGGATAAGGTCCAATCACGAGCGCCTGGTCAACATTGGAGGCACTGATTCGATGGTCAAGGACACGCCCATGAAACTCAAGGCCATCACGGACTGGGGATCACAAGGAATACGGGTATGGGATGTAGTGAGTGAGCTGGTGTGTCTGTGCACCGTTCCATCTCCCTCCAACCCCTTTGCCCTGGACATGCGCTACCTGAAAAGCCTTCCTCTCCCAGAGCGCTTCCTGGTCTCTGGGGCTCTGCTTAACTTTCTGGAAACCTACGCTGTCTATGGCAACCGGGATGAGCTGCACTACGACAAAGtcgtaGAAGAGATGAAGTCTCTGAGGCGTCTCCATGTCCAGACTCTGTCTGAGGTCCAAAGAAGACCGGGCAGAAGCACCAGGCCAGCCTCTCCCGTTTCAGGAGAGTCCTCAGAGGAAGAGTGACAAAGGTCATATTCTTTAGTGCAcagcacaccgtagcaaaacgctTTGCAACGAAAAACTTTAAAAAACTACAGTTTCTTATAGGGCAAGTCCAGGGGTGCTTTCAGTTCAATATAACATTTGCTATGTTGCGTAATGGTTTGTACTGAACGACACGTTTCCCCAAAACGTTCAACGTTCTTAAACAAGACTTTGAGGTACGTTTGCTCCGATTGGTAATGTATCAACTTCAGGATGTTTTCTTCCTTTTGGTGCCCctgaacacaaccctgatgtGGTGGTCAGAGTCGACATTGTAGGATGGAAGGGGGTACTAGCATATCCCTATGTTTGTGCATTTTTAATATAGGTAAACATATAGCCATATTGAATGATTATTTCCCCAACAGAGGTGTGATCAATGTGCCAATAAGACAATACAAAAGGGAACTATTATTTGTCCCCCCTGAAAAATGCTCTCATTCAAATGTGCTAGGCCCATAAATAGGGCACATTTGAATGTATGGTACTCCATTTCAATGTGTTAATGTACTGTAATTTCACCTCTGTCACAGTGATGTAGAGGTAAATGTCAGTTTAAGCAATTATGAAATGGGTCAGAATAAAGTAAAGTATCCTAAGAA

Function

NR:

description
uncharacterized protein LOC110500570

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577982.2 True 1847 mRNA 0.47 8 45642861 45648249

Neighbor

gene id symbol gene type direction distance location
si:dkey-38p12.3 LOC106608755 coding upstream 77119 45544516 ~ 45565742 (+)
LOC110500870 LOC106608752 coding upstream 125628 45485247 ~ 45517233 (+)
nectin4a LOC106608750 coding upstream 167947 45455659 ~ 45474914 (+)
fcer1g LOC106608748 coding upstream 193149 45444361 ~ 45449712 (+)
ndufs2 ndufs2 coding upstream 198664 45432580 ~ 45444197 (+)
LOC110500572 LOC106608759 coding downstream 29412 45677661 ~ 45686049 (+)
LOC110500573 LOC106608761 coding downstream 40201 45688450 ~ 45702662 (+)
LOC110500577 lsmd1 coding downstream 96361 45744610 ~ 45755368 (+)
cnpy4 cnpy4 coding downstream 199937 45848186 ~ 45850007 (+)
LOC110500584 LOC106608769 coding downstream 221638 45869887 ~ 45888657 (+)
G1743039 NA non-coding upstream 9485 45633138 ~ 45633376 (+)
G1743037 NA non-coding upstream 11890 45630695 ~ 45630971 (+)
G1743011 NA non-coding upstream 14412 45582928 ~ 45628449 (+)
G1743007 NA non-coding upstream 15716 45581584 ~ 45627145 (+)
G1743004 NA non-coding upstream 16140 45580899 ~ 45626721 (+)
G1743060 NA non-coding downstream 16745 45664994 ~ 45665215 (+)
G1743068 NA non-coding downstream 26392 45674641 ~ 45674846 (+)
G1743069 NA non-coding downstream 26857 45675106 ~ 45675347 (+)
G1743070 NA non-coding downstream 27191 45675440 ~ 45675842 (+)
G1743076 NA non-coding downstream 54927 45703176 ~ 45706460 (+)
G1743043 NA other upstream 3119 45639296 ~ 45639742 (+)
LOC110500529 LOC106608720 other upstream 1170297 44461338 ~ 44480565 (+)
G1743077 NA other downstream 58893 45707142 ~ 45709950 (+)
G1744645 NA other downstream 1515655 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2446518 48094767 ~ 48095119 (+)
G1746471 LOC106608612 other downstream 2676851 48325100 ~ 48363926 (+)
G1747255 NA other downstream 3329077 48977326 ~ 48977758 (+)

Expression


Co-expression Network