XLOC_036306 (bend5)


Basic Information

Item Value
gene id XLOC_036306
gene name bend5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 15502785 ~ 15520907 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070953
tttattctattctttttaagaaatgtaaagtgattTTGTTGTATAAGAAAACttcttgttaataataaaaaagaaaagctgaACCCCCCAAATAAACCTCTGATCACTTCTCGTTTGATTAGTACAGTCTGAAGCGACGAGGCTCTGCATTTCCTCAACCGAGACGCACCAGCCAGACAGAACCAGTCGATCGCAGAGGCCTCCCCACTGTCTCCCCCCtctttgtgtttatatatgttttttaaaatcttttttgagGGAAACTGTCAAGCCCTATCCCAAAGAGCAGGGACCAAAGAGCAAAAATAATGTACGCGTTCGTGCGTTTCTTGGAGGACGATATGTGCTACGCGTTACCTGTGTCAGACGTGAAAGATTTCCAGCCTGTGCACAAAAGAGATTTTGATGATCAGAAGGTGTATGTGGTGCTGAGAGGCGCAGGCCAGCCTGCCAAAGCACACATCCTCGCCCTGGCAGaaaGCATTGAGGAATTTGAGCACAGTATTATGCAAAAGAAGATGAAAATACCCAAGATGTCGAACAGGAACACAGTGGAGAATCATTTTGGCGAGGAGAGAATGCCCCTTAGACATAAAAAGGTCCAGTCACAGGAGCATCAGCGGGCCACTTCAAACTCCTCAAAGAGCCTGGCTGCGGTTGTGGCTCGACTGGAGAGGAACGCAGTCAACTCATGCACAGAGGGAGAGGAGCTGGACAGACTCACaacagaggaagaggaagagcagGACGAGGCCGTGGTTCCTCGTGTCCTGTACGAAGAACTGGTGCACAGCTACAGGCAGCAGGAAGAGGAAATGAGACGtctgcagcaggaactggagcGCACACGCAGACAGCTGCTGCAGCAGGCCAAGAAGCTGAAAGAGTACGGCAGTCTGCTGACAGAAGTCAAGGAGCTGCGCGATTTCAATAGACGCCTGCAGGATGTCCTGCTCATGAGGCTCGGCAGCGAGCCGATGCATGACAATGGCACACAGACAATCAAACCAGAGGTGGTGGAGCCCATCAGTGAGCCACAGGAAGCATGTCAGGAGGAAGCAAACACAAGCTCCACCCACTCACCGTCCCCGAGAACCGTCTACACCTTCAATGATGGAAAAGTGCACTTGGGCGGAGGGATTTGGGTGGATGAGGAGAAATGGCACCAGCTACAACGGACACAGGGAGACTCCAAATTCACCAAAAACCTGGCGGTGATGATCTGGGGCACTGAAACCCTGAAGAACCGCAGCGTGACTGGTGTCGCTACAAAGAAGAAGAAAGATGCCCTGCCCAAACCACCGCTCTCACCAAGCAAGCTCAAAATTGTCAGAGAGTGTCTGTACGACCGCGTTTCTCAAGAGACAGCCGACAGCGCAGAGATCACCCAGCGATTATCCAAAGTGAACAAATACATCTGCGAAAAGATCATGGATATCAACAAATCCATCAAGAACGAGGAACGGCGAGAATCCAAGCTCCTCATCCAGCAGACGGTGAAGATGGAGAACTTTCCGTACGACGGCCTGTAGGGGGTGCTGAAGTTGTCACCATAGCTCATTCTACTCCTCAAGGACTTCTGGTGGAGAAGGTGCACGTAATCACCGGCGCTGCCAATTGAGATTCCCACTGATGCCCTCCCAAGACCTCTCTGTCTTTTACTCTCGCAGCCCCTGTTTTACAGCCTGCCTGACAGTTTTACCTCGCTCCACGCTGCCTTTGCATGCCGGTGTGCATTCTGTGAGTGAATGGGGGTGGGTTTTTGTAAGCTTTGATTGGGAGGGGCGGGCTCGGATGTCATGTGTGATAGACAGGAGCCATCCTTTAAATAGCGTGCGAGAAAAATGTGTTTGGCACATCAGCTTGTGTTCTGTGTCAGAACATGTACTAAAGCGGTAAAGTCTTCTTGTTTCAGGGGAGTGTTTTTGGAGGTGTCATAAATGCTGGCTTAGAGGTGGAGTCTTTAAGGGGGAGGTAGGTCACTTCACAGGGACCATCTGGTAAAGGTACTTAACATAAAGAGTTGCACTTTTAAACAGGGTCACACCCTGCGTCGTCTTAATGAACGattgatttaattaatcaatctAGGCCTAATTGCTCCCGTTAATTGCTTTCCTGAGATGACTACTGATGGTCCGTTCTCGTTCGTGATGGTTGTTTGGGGTGGAGAGGTCGCATGTAGTCAGTGGTGCTAAACAGTTGTCCTGAAAGATGATTAAGTGatgttttttctttagtttttaagaaatcagccacaattttttttctcttattcttTTAAAGGTAAATTTGGAGTTTTCATGATCATCCGTATATTATTTGGGCATCATAAAATATTGAATcacgctttattttgatagtccatttgttcaatttaagttatattgcatctacatgccagctaatttttattagatcataagtagactgttagattagGGTTAggcttagtgtaagttgacatgtactttcaTGTACtgtaagtttcttatagtcatttaaatgtctgtttagcagcagtatctacagattttaagcagacggtctactaatactctattggaccatcaaaataaagtgttactaaatattgacattttaacatatttgtttttttggttttttttttgacagcaaTAGTTGCAATATAGTTTGCTGAGGGTGTGTTTGCACTGGTACCTGGGGTTGTAacaatactggaattcagtaccaatcga

Function

symbol description
bend5 Predicted to enable DNA binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Orthologous to human BEND5 (BEN domain containing 5).

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-460 Predicted to enable DNA binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Orthologous to human BEND5 (BEN domain containing 5).

Ensembl:

ensembl_id ENSDARG00000075624

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070953 True 2720 mRNA 0.46 6 15502785 15520907

Neighbor

gene id symbol gene type direction distance location
XLOC_036305 agbl4 coding downstream 104025 15311289 ~ 15398760 (-)
XLOC_036304 spata6 coding downstream 197257 15287424 ~ 15305528 (-)
XLOC_036303 NA coding downstream 251316 15251183 ~ 15251469 (-)
XLOC_036302 bcar3 coding downstream 272806 15084386 ~ 15229979 (-)
XLOC_036301 NA coding downstream 421120 15078036 ~ 15081665 (-)
XLOC_036307 FP017128.1 coding upstream 111825 15632732 ~ 15632847 (-)
XLOC_036308 agbl4 coding upstream 112547 15633454 ~ 15991801 (-)
XLOC_036309 CR931780.2 coding upstream 395303 15916210 ~ 15916327 (-)
XLOC_036310 CR931780.1 coding upstream 541265 16062172 ~ 16064410 (-)
XLOC_036311 NA coding upstream 697347 16218254 ~ 16254661 (-)
XLOC_036300 NA non-coding downstream 712064 14783214 ~ 14790721 (-)
XLOC_036297 NA non-coding downstream 1007439 14491293 ~ 14495346 (-)
XLOC_036296 NA non-coding downstream 1020328 14474769 ~ 14482457 (-)
XLOC_036313 NA non-coding upstream 743023 16263930 ~ 16268947 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_05308426_05318353 BEND5 coding CI01000010 null 5308292 ~ 5319096 (+)
bowfin (Amia calva) AMCG00004777 bend5,LOC106584333 coding CM030140.1 CM030140.1 1691028 ~ 1718262 (-)