LOC110500573 (LOC106608761)


Basic Information

Item Value
gene id LOC110500573
gene name LOC106608761
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45688450 ~ 45702662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577986.2
GAGTGGATCCAAATTGTGGGCTGAAGGCTTTGCATTCGTGCGTCTGGCACATGACCGGTGCATTGACCGGTGCATTCAACTGAAAACCACTTCTTGGAGAAGAAAAGCTGATGCGGCAGAGTGAGTGCATCATACGCGGTACTGTATGTCAACGCCAGATATGACCCCGCTGCAAAGGCGGTGGGAAGACAAGGAAGTTGACTCAACGAATCAAGTGGCAGAAGGATGCAATCatagtggatgtaaactagtcgACAACTTTATTTGCACCGCTTGCTGCAAATTTCTCAACATTGCGCATTTGGCTACGACCTGCAAGGCAGACAGTCCCAAGATATTTCGTCTGTTTAAATTAGTTGATTAAAGCAACAGTATTGTCTATTTAGTTGCTGTTTTGAAACCCATGCAATTATTTCATATTTCACATGATTTCCACTTTTATCAATAGGGCTATTGAGCTCTCATTTGTACTGCGGCCGGTAGCACTTGCACGTCTTGCCAAAATAATGTGAGCATTTGGATTGTATTTCACAAAAAAAAGGGAAACGTGTCGCTGTAATGAAGTTAATATGAACATTTCGAATAGTCTGCAATGGTAACCGGGGAATGTGGAACAACCATGCATCGAATTCTGCGGAGGAGAAAAGTGCGCAAACTTCGCTTCGTCTGGGCATTCATGGCCATGGTGGCTCTGTCGCTCTCCGCCTGCAGCGCACTGTTTACGGCGTGGACCTGGAGACAGACGCGGGACCTGTCCCAGTCATTAAAAACTCTGCAAGACCGATTGGAGCAGGTGAATACTCAGCGGAAGGCCATTGTCCAACTCATCATGGAGAAGAGAGATTTGCTTGTGGGCCAAAGGGTGAAGAGAGATGGGGGAACTGGGAAAGGGAAGAATGGACATGGAAAGAAAGTGGCTTCTCAGTTTGAGAtAACCAAAGAGTCTGTTCAGAAAGtgGGAGAGGACGGCTTGATAAAAGGATGGACGGACTCCGAGCACTTGAATATGAGCAAGGCGGTGAAGTACAACGCAGACAGAGGCATCTTCACAGTTGAGAGAACGGGAGTCTACTTCCTGTACTGTCAGGTGTTGTTCAATGAGAACCAGTCTCAGCTGGTGAAGCTGGACGTGGCGGTGGTGAGGGGGAGCCAGCGGCTTCAGAGGTTACAGTGCATGGAGGGCTACGGGACTACGCCTGCAGCCGGATCACACCAGTTCCACTTCCTCAAACCCTGCCAGGTGTCCGGCCTGCTGCGGCTGGAGAAGGGGGTGGAGCTAAAAGCCATCACAGGCCCCGCTTTCAACCTCCACATCACGGGAAAGCATTACTTCGGTCTCTTTAAGGTCAACTGAGCTACCGGAGAGGATGGGCATTTTAAAAGGAAGGAGGAGAAACCTGTTTTAAAGGAAGTGTTTTGTCTTATTCGGACCTGTATCAAAGAGACACACCAATGTGATATTTCCGGATTCGTTTTTATTGTGAAATCTGGACCAACGATCTGAATCGTTGGAATAACTATGAATCATGTTACCTATAGACACTCTGTATGATACCTTTTCAAAGACAGAAACTACAAGGAAGACTTAAAGTGAAACTATATTATGCACTTCTGGACTCTCCAAGAGTTTCTACCCCTGCTTCTTTGAAGATTTAAAACTAATGGAATATTCTCTGATGGAGCTCTTTTGGAGCACAACACATCCACCTGACTCTTCTTTCACCGTGACTTGGCCTGAAGACTGCGGGTGCACCTCTCTGAGGAGCTACGCTGGTGGACTACTGAATGAGAAGGATTTTGGATAATGAGCTCTACAACTCTTGTCTCTTTTCCATTGTAATCCTAGCTTAGGTTATTTCAGTAGCTTGGAGATAATATAAGCAGCCCAGCTCAGATGCAAATATTGTTCTGTTCACATTCAACTAAACAGCGATGCACACCTCGGCTCAAGCCTAAAAAAACCCATCAAAAGTCCATTATAGTGCACTGCGCTATGAGACGCATTGGATTGAACCTTGACCTGTATGTGAAAATAAGTGTCAACCTGTGGAGATATTTCATGGTGGAAATAGAAATGATTTTGTATATTATATTCACAATACTTGTACTCATTCCAAAGCGCTCTTATGTGCCATTTGCAGCAGTATGTTTTGAATACAGACAGTACAAACAAAGTATTTCTATCAGGTGGTTTGGTTTAATGTTTCACCACTCCTACTCTGGTTTATAAGTAGTATGTGGGGGACCACATTGGTTTCTGCTCAGCAATTTCcacacgtgcacgcacgcacgcatgcacacacacacacacacacacacagcaaaagtCAAGTTATTATGGTTTCCAGCTCTAAACGTCATTTCTCATCATTAGATCAAAAGTGTAAAATGTGGTTTTGTAAAGTATACATAGTTCTTGTTTGATTTCCTAATCCTTCTCCGCTTCCCTTTTGTGTTTACCCACTTTGCacatcccctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagctcttcaACTCTCACTTCCTGATTCCGATCTTGAACCAAATAGCTGAAAGCGTTTGATGAAAAACATGTCGGGCACTTCCCTCCCCAATTCCTTTTATTTGAAATGTCAAAGTTTATTGCCACTTTAAAAAGCCTTATTTTGCACAATGAGGCCTTTCGCTGAGAAGTCTAACAAGTTGGGCAAGGTTGAAGAACCAGTGAGGGGATATTGTGTATATACATGTTTGCGTAATTATGTCTGCAACGCTGGTTGTTGTTCTAAACTCACTTCCTATAAAAATGTTAACCTTTAAAACCTTTTTCCGTTTAAATATCTCCTTGTGTTCGCTTTTGACTCAGACCAGGGATTACTACTGTACAGAgacaggatcttaatttgagccagtttgctacagcagaagAAAAATCCtgaagcaacaggaaatgtaactattatgtggattataattcaaatacatttttgtagggtttgatacatttttcagaaggaaaaatcaagtctgaaatttcaaggtggaaattacaaacttcagaagcctttttaaacctcaaatacactacaagttttaaatgTCCTGAATTGCAGGAAAgatctcctgcaacagggtga

Function

NR:

description
tumor necrosis factor ligand superfamily member 12-like

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG:

id description
K05474 TNFSF12, TWEAK; tumor necrosis factor ligand superfamily member 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577986.2 True 3209 mRNA 0.44 6 45688450 45702662

Neighbor

gene id symbol gene type direction distance location
LOC110500572 LOC106608759 coding upstream 2401 45677661 ~ 45686049 (+)
si:dkey-19b23.7 LOC106608757 coding upstream 40201 45642861 ~ 45648249 (+)
si:dkey-38p12.3 LOC106608755 coding upstream 122708 45544516 ~ 45565742 (+)
LOC110500870 LOC106608752 coding upstream 171217 45485247 ~ 45517233 (+)
nectin4a LOC106608750 coding upstream 213536 45455659 ~ 45474914 (+)
LOC110500577 lsmd1 coding downstream 41948 45744610 ~ 45755368 (+)
cnpy4 cnpy4 coding downstream 145524 45848186 ~ 45850007 (+)
LOC110500584 LOC106608769 coding downstream 167225 45869887 ~ 45888657 (+)
LOC110500588 LOC106608772 coding downstream 239495 45942157 ~ 45944870 (+)
LOC110500591 LOC106608776 coding downstream 313760 46016422 ~ 46020567 (+)
G1743070 NA non-coding upstream 12608 45675440 ~ 45675842 (+)
G1743069 NA non-coding upstream 13103 45675106 ~ 45675347 (+)
G1743068 NA non-coding upstream 13604 45674641 ~ 45674846 (+)
G1743060 NA non-coding upstream 23235 45664994 ~ 45665215 (+)
G1743039 NA non-coding upstream 55074 45633138 ~ 45633376 (+)
G1743076 NA non-coding downstream 514 45703176 ~ 45706460 (+)
G1743087 NA non-coding downstream 10041 45712703 ~ 45712910 (+)
G1743089 NA non-coding downstream 13249 45715911 ~ 45716144 (+)
G1743090 NA non-coding downstream 15311 45717973 ~ 45718186 (+)
G1743091 LOC106608762 non-coding downstream 15725 45718387 ~ 45718742 (+)
G1743043 NA other upstream 48708 45639296 ~ 45639742 (+)
fcer1g LOC106608748 other upstream 239763 45444361 ~ 45449712 (+)
LOC110500529 LOC106608720 other upstream 1215886 44461338 ~ 44480565 (+)
G1743077 NA other downstream 4480 45707142 ~ 45709950 (+)
G1744645 NA other downstream 1461242 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2392105 48094767 ~ 48095119 (+)
G1746471 LOC106608612 other downstream 2622438 48325100 ~ 48363926 (+)
G1747255 NA other downstream 3274664 48977326 ~ 48977758 (+)

Expression


Co-expression Network