LOC110500575


Basic Information

Item Value
gene id LOC110500575
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45735907 ~ 45739812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110500575
ATTTATGGACTGTCCAGCCGCTCACGAGATGCAGCAAAGCTGATTTGAGTCTGGTGCTGTCTCTATACCAGGTGCTTCCGTGGTTACCATAGTAACGGAGCTTGTTTGTTAATGCAATGTAGCGACTGAGCTTGCAAATAAACAAAATTAACAACATTTTATATCTATGACATATTTCACGTGACCATTTATAGGTATCCATACATTCTCCATATATTGGGTAAACTTTCAGAAGTAATATAAATGCCGCGACCAAAGTATTTCACTCTGAACAAGGTGTCCTTTCATAACACCATGCCTTGGCGACCTCACACTATTGGTGAATGACTTTAAAGTTGATGTACTTCTGAGACCTATTATTGGCTGTGCAGGAAATGACATCAGTCACTGGTTTGAATTAAAGACAACATTTGTGATAATTCCCAATTTGTATTCTTACATTCGGACTCACCTGAACCCACTATCTGACTATGTGATGTACTACACCCCTAGGGGGTGCTCTGTGCACGTGTCGTCTCCCTGCCCTAGTACTAACTGGACCAATGACTTTGGGCAACCCTGGTGGAGGGATACCCAATATGAGGTGGGGCTATTTTGCCAAGACCAGGTGGATCCGCATCATCAACACCCTCACATCCCAGGAGCATAGGTCCCAAGTGTGTTCTGAGGAGACCTTGAATGAGATTCCCCTTCGCAACAGCTCCCACACCACCAGCTCCACCTGGAAGCACAACTGCGTCAACCCGGGACATTAGTAGGACACTGGAGGAGAACGGTATCCTCGACAAGGATGAGGACTTCTACAGTGGACGCATGGACCGCGACCTCTTCTCCCAGTCCATCGGTCTCTACTCAACATCAATCCCACTGAACTTTGACCTCATTTGTAAGGATGTCAGAAAATGGTGAGGAGCAATATGAGCAATCTATTAAAAGGTTGACTTACAAAGTACAGgtcctttattttttttatattgtgaTATTGTTATGAACATTTTATTAGAGGGAATTTGAGCCTGTAAAGGACTAGAACTCATAACCTCACAATCAACATCCGTTCCTTGCCATTCTATCCCAGTGTCTTCCTTTTGTCATTCCTTCAAACCTTCTTGCATCTACAATAGGCCAACATACGTTAATAAATTAACAATAGTCTGCCAAAACTGTACATAAAACTGCATGGTAACCATGGTAATCGTTTATGTGATATTTAATAGTAGGCTACTTCCTCTCAACAGCTCCTTTGTGGCTCTGCTGAGTTTTAATTTCCTGTACTACAAAATGTGCAGGAAACCAACTCTACTGTAACAGTAGCAGTTTTAGTCAGTTGTGAAAAGTCATGTTACACATATTTCTTTAAATCAGTGACGTGTCATTGTTATCAATGTTTAGTTTATTCATCACAATTCac
>TU1996491
acagtAGGCATGACGAATTAGAGTTAAAACTTTGCTGACACTTTTCGCCTATTTACTTTTCAAATTGGGCATTACATTTGTCAAATGTCTTACCTTGTGATTTATGGACTGTCCAGCCGCTCACGAGATGCAGCAAAGCTGATTTGAGTCTGGTGCTGTCTCTATACCAGGTGCTTCCGTGGTTACCATAGTAACGGAGCTTGTTTGTTAATGCAATGTAGCGACTGAGCTTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110500575 False 1411 mRNA 0.43 4 45735907 45739713
TU1996491 True 235 lncRNA 0.43 1 45739578 45739812

Neighbor

gene id symbol gene type direction distance location
LOC110500574 LOC106608762 coding downstream 1615 45703162 ~ 45734292 (-)
si:dkey-19b23.8 LOC106608758 coding downstream 80951 45650089 ~ 45654956 (-)
LOC110500569 LOC106608796 coding downstream 106027 45589371 ~ 45629880 (-)
LOC110500566 LOC106608796 coding downstream 124170 45605872 ~ 45611737 (-)
LOC110500568 LOC106608796 coding downstream 140668 45579245 ~ 45595239 (-)
dnajc3b LOC106608764 coding upstream 16653 45756366 ~ 45763401 (-)
cldn15a LOC106608766 coding upstream 23988 45763701 ~ 45766225 (-)
LOC110500580 LOC106608767 coding upstream 33239 45772952 ~ 45778146 (-)
zgc:103586 LOC106608798 coding upstream 38804 45778517 ~ 45780181 (-)
LOC118942789 NA coding upstream 53725 45793438 ~ 45796870 (-)
G1743392 NA non-coding downstream 59488 45676013 ~ 45676419 (-)
G1743382 NA non-coding downstream 74544 45661135 ~ 45661363 (-)
G1743347 NA non-coding downstream 86117 45648631 ~ 45649790 (-)
G1743377 NA non-coding downstream 94158 45641502 ~ 45641749 (-)
G1743413 LOC106584613 non-coding upstream 345 45740058 ~ 45740560 (-)
G1743414 NA non-coding upstream 4427 45744140 ~ 45744565 (-)
LOC110500592 LOC106608778 non-coding upstream 302531 46042237 ~ 46125028 (-)
G1743608 NA non-coding upstream 358705 46098418 ~ 46099413 (-)
G1743695 NA non-coding upstream 429374 46169087 ~ 46171732 (-)
G1742845 dock11 other downstream 441168 45287791 ~ 45294739 (-)
G1742473 LOC106608730 other downstream 867264 44864416 ~ 44868643 (-)
G1741446 NA other downstream 1558205 44175184 ~ 44177702 (-)
LOC110500515 gigyf1 other downstream 1678258 44047717 ~ 44097779 (-)
G1743429 LOC105030512 other upstream 31109 45770822 ~ 45772431 (-)
LOC110500942 NA other upstream 70700 45809435 ~ 45813290 (-)
G1743697 NA other upstream 432254 46171967 ~ 46173734 (-)
G1746833 LOC106608613 other upstream 2668778 48408491 ~ 48410753 (-)
LOC110500878 LOC102779023 other upstream 3680765 49392218 ~ 49424330 (-)
G1743409 NA non-coding downstream 2669 45736680 ~ 45736909 (-)

Expression


Co-expression Network