LOC110500577 (lsmd1)


Basic Information

Item Value
gene id LOC110500577
gene name lsmd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45744610 ~ 45755368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577990.2
TGATGCATTTCCAGTTATACGTCAGAGAAATAATTCCGCTAGAAAAATAGAATCAAGAAAGGGTGGAATGGCAACAATGATTGAAGAAAATGGTCCATCAACTCATGGGCAGAGTGAACTGTCATCCTCTTCTTCCAGAGTGCGTCAGAAGCTGGAGAGCCTGCTGAACAAGAACATGAGAATCAGAATGACAGACGGACGGACGCTGGTGGGACTGTTCTTGTGCACAGATAGAGACTGCAACGTCATCCTGGGGTCCGCTCAGGAGTTCCTCAAATCCTCAGACTCCTTCTCCCAGGGTGAGCCCAGAGTGCTGGGTTTAGCCATGATTCCCGGCCACCACGTGGTCTCCATCGAGGTGGAGTCAGACACCCTGGCCGACACACAGGGGTTCGGGGGCAGCCACTGAAGAACAAGCTGAGCTCACCCAAAGTCGGAGGACACGGTCCTAGAAAAGGCTACAGTACAGACTTGAAATGGGAGAATTCAATCAAAGGAATTCCAGATGTGGCTGATCTCTGGTGCCAGTGTCGTGGGTTTACCAGTCAGAGCCAAGATAGGTGCGAAATGTAACCAAGCATCCCCAGTGACATTAGTGTCTGTGAAGTTAATACGGAGTATAAAAGTTATTTGCGCAATAAGGGGCATGGGACTGAGCCAGACGGTACAGTATATGTCTGTGTGATAAATGATTTTCAATAGATTTCAGTATTTAAACCTGTGTCTGATCTGTCAATGAGGAACGATGCAGACGTTCCTTATATACTGGTAGTGCAGCAGTTACATGTAGTTCAGAGCATATGAATAGCTAAAGTGAATTACCTACTTGACTTAAAACCCTTGGCTCCTATTAGGAGCATAAGTTCTTGGCaaatgtcctccatctcactcatCAGGGCAAGTCTTTCCAGGTCACACCATTTGAGGCCATCAGTTAGCTGTTCaagtcaaatttgattggtcacatatacatatttagcagatgttattgtgggtgtagcgacaGTATCTAATAATTCACAACAATGctcacatctaaaag
>XM_021577988.2
TTTCCAGTTATACGTCAGAGAAATAATTCCGCTAGAAAAATAGAATCAAGAAAGGGTGGAATGGCAACAATGATTGAAGAAAATGGTCCATCAACTCATAGAGAAGATTGAACAAGATCTGCTAGTTTTGCCGAAAATCTGTCAATTTCGCCCTCGTGCTAGAAGCCACAGCCGCAATTTTGGAATGGCaatgtcagccaatcagctcctttgttcaACACCACGTTCCATTCCATAATGGCTGCCAGTGCTGTGGCTACCGCTATCTAGCATGTGGACGAAAATCAGCAAATCGTTAGATCTTCTCGGTGTAACAGTTGGGATAGTGGGACAATTTGAAGTACAACACATTTctcatccctggattgagGGGCAGAGTGAACTGTCATCCTCTTCTTCCAGAGTGCGTCAGAAGCTGGAGAGCCTGCTGAACAAGAACATGAGAATCAGAATGACAGACGGACGGACGCTGGTGGGACTGTTCTTGTGCACAGATAGAGACTGCAACGTCATCCTGGGGTCCGCTCAGGAGTTCCTCAAATCCTCAGACTCCTTCTCCCAGGGTGAGCCCAGAGTGCTGGGTTTAGCCATGATTCCCGGCCACCACGTGGTCTCCATCGAGGTGGAGTCAGACACCCTGGCCGACACACAGGGGTTCGGGGGCAGCCACTGAAGAACAAGCTGAGCTCACCCAAAGTCGGAGGACACGGTCCTAGAAAAGGCTACAGTACAGACTTGAAATGGGAGAATTCAATCAAAGGAATTCCAGATGTGGCTGATCTCTGGTGCCAGTGTCGTGGGTTTACCAGTCAGAGCCAAGATAGGTGCGAAATGTAACCAAGCATCCCCAGTGACATTAGTGTCTGTGAAGTTAATACGGAGTATAAAAGTTATTTGCGCAATAAGGGGCATGGGACTGAGCCAGACGGTACAGTATATGTCTGTGTGATAAATGATTTTCAATAGATTTCAGTATTTAAACCTGTGTCTGATCTGTCAATGAGGAACGATGCAGACGTTCCTTATATACTGGTAGTGCAGCAGTTACATGTAGTTCAGAGCATATGAATAGCTAAAGTGAATTACCTACTTGACTTAAAACCCTTGGCTCCTATTAGGAGCATAAGTTCTTGGCaaatgtcctccatctcactcatCAGGGCAAGTCTTTCCAGGTCACACCATTTGAGGCCATCAGTTAGCTGTTCaagtcaaatttgattggtcacatatacatatttagcagatgttattgtgggtgtagcgacaGTATCTAATAATTCACAACAATGctcacatctaaaag
>XM_021577989.2
ACGTCAGAGAAATAATTCCGCTAGAAAAATAGAATCAAGAAAGGGTGGAATGGCAACAATGATTGAAGAAAATGGTCCATCAACTCATGTAGGGGGGCAGAGTGAACTGTCATCCTCTTCTTCCAGAGTGCGTCAGAAGCTGGAGAGCCTGCTGAACAAGAACATGAGAATCAGAATGACAGACGGACGGACGCTGGTGGGACTGTTCTTGTGCACAGATAGAGACTGCAACGTCATCCTGGGGTCCGCTCAGGAGTTCCTCAAATCCTCAGACTCCTTCTCCCAGGGTGAGCCCAGAGTGCTGGGTTTAGCCATGATTCCCGGCCACCACGTGGTCTCCATCGAGGTGGAGTCAGACACCCTGGCCGACACACAGGGGTTCGGGGGCAGCCACTGAAGAACAAGCTGAGCTCACCCAAAGTCGGAGGACACGGTCCTAGAAAAGGCTACAGTACAGACTTGAAATGGGAGAATTCAATCAAAGGAATTCCAGATGTGGCTGATCTCTGGTGCCAGTGTCGTGGGTTTACCAGTCAGAGCCAAGATAGGTGCGAAATGTAACCAAGCATCCCCAGTGACATTAGTGTCTGTGAAGTTAATACGGAGTATAAAAGTTATTTGCGCAATAAGGGGCATGGGACTGAGCCAGACGGTACAGTATATGTCTGTGTGATAAATGATTTTCAATAGATTTCAGTATTTAAACCTGTGTCTGATCTGTCAATGAGGAACGATGCAGACGTTCCTTATATACTGGTAGTGCAGCAGTTACATGTAGTTCAGAGCATATGAATAGCTAAAGTGAATTACCTACTTGACTTAAAACCCTTGGCTCCTATTAGGAGCATAAGTTCTTGGCaaatgtcctccatctcactcatCAGGGCAAGTCTTTCCAGGTCACACCATTTGAGGCCATCAGTTAGCTGTTCaagtcaaatttgattggtcacatatacatatttagcagatgttattgtgggtgtagcgacaGTATCTAATAATTCACAACAATGctcacatctaaaag
>XM_021577991.2
ACGTCAGAGAAATAATTCCGCTAGAAAAATAGAATCAAGAAAGGGTGGAATGGCAACAATGATTGAAGAAAATGGTCCATCAACTCATAGTGCGTCAGAAGCTGGAGAGCCTGCTGAACAAGAACATGAGAATCAGAATGACAGACGGACGGACGCTGGTGGGACTGTTCTTGTGCACAGATAGAGACTGCAACGTCATCCTGGGGTCCGCTCAGGAGTTCCTCAAATCCTCAGACTCCTTCTCCCAGGGTGAGCCCAGAGTGCTGGGTTTAGCCATGATTCCCGGCCACCACGTGGTCTCCATCGAGGTGGAGTCAGACACCCTGGCCGACACACAGGGGTTCGGGGGCAGCCACTGAAGAACAAGCTGAGCTCACCCAAAGTCGGAGGACACGGTCCTAGAAAAGGCTACAGTACAGACTTGAAATGGGAGAATTCAATCAAAGGAATTCCAGATGTGGCTGATCTCTGGTGCCAGTGTCGTGGGTTTACCAGTCAGAGCCAAGATAGGTGCGAAATGTAACCAAGCATCCCCAGTGACATTAGTGTCTGTGAAGTTAATACGGAGTATAAAAGTTATTTGCGCAATAAGGGGCATGGGACTGAGCCAGACGGTACAGTATATGTCTGTGTGATAAATGATTTTCAATAGATTTCAGTATTTAAACCTGTGTCTGATCTGTCAATGAGGAACGATGCAGACGTTCCTTATATACTGGTAGTGCAGCAGTTACATGTAGTTCAGAGCATATGAATAGCTAAAGTGAATTACCTACTTGACTTAAAACCCTTGGCTCCTATTAGGAGCATAAGTTCTTGGCaaatgtcctccatctcactcatCAGGGCAAGTCTTTCCAGGTCACACCATTTGAGGCCATCAGTTAGCTGTTCaagtcaaatttgattggtcacatatacatatttagcagatgttattgtgggtgtagcgacaGTATCTAATAATTCACAACAATGctcacatctaaaag

Function

NR:

description
PREDICTED: LSM domain-containing protein 1 isoform X2

GO: NA

KEGG:

id description
K20824 NAA38; N-alpha-acetyltransferase 38, NatC auxiliary subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577990.2 False 1042 mRNA 0.46 3 45744610 45755368
XM_021577988.2 False 1306 mRNA 0.46 4 45744617 45755368
XM_021577989.2 False 1030 mRNA 0.46 3 45744628 45755368
XM_021577991.2 True 992 mRNA 0.46 3 45744628 45755368

Neighbor

gene id symbol gene type direction distance location
LOC110500573 LOC106608761 coding upstream 41948 45688450 ~ 45702662 (+)
LOC110500572 LOC106608759 coding upstream 58561 45677661 ~ 45686049 (+)
si:dkey-19b23.7 LOC106608757 coding upstream 96361 45642861 ~ 45648249 (+)
si:dkey-38p12.3 LOC106608755 coding upstream 178868 45544516 ~ 45565742 (+)
LOC110500870 LOC106608752 coding upstream 227377 45485247 ~ 45517233 (+)
cnpy4 cnpy4 coding downstream 92818 45848186 ~ 45850007 (+)
LOC110500584 LOC106608769 coding downstream 114519 45869887 ~ 45888657 (+)
LOC110500588 LOC106608772 coding downstream 186789 45942157 ~ 45944870 (+)
LOC110500591 LOC106608776 coding downstream 261054 46016422 ~ 46020567 (+)
LOC110500595 LOC106608779 coding downstream 396073 46151441 ~ 46172393 (+)
G1743100 NA non-coding upstream 15405 45728890 ~ 45729205 (+)
G1743099 chd3 non-coding upstream 15850 45728500 ~ 45728760 (+)
G1743098 LOC106608762 non-coding upstream 16649 45727476 ~ 45727961 (+)
G1743096 NA non-coding upstream 19573 45724672 ~ 45725037 (+)
G1743094 LOC107738011 non-coding upstream 21239 45723067 ~ 45723371 (+)
G1743112 NA non-coding downstream 30482 45785850 ~ 45793826 (+)
G1743166 NA non-coding downstream 136529 45891897 ~ 45928329 (+)
G1743171 NA non-coding downstream 167138 45922506 ~ 45967783 (+)
G1743202 NA non-coding downstream 173458 45928826 ~ 45930122 (+)
G1743077 NA other upstream 34660 45707142 ~ 45709950 (+)
G1743043 NA other upstream 104868 45639296 ~ 45639742 (+)
fcer1g LOC106608748 other upstream 295923 45444361 ~ 45449712 (+)
G1744645 NA other downstream 1408536 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2339399 48094767 ~ 48095119 (+)
G1746471 LOC106608612 other downstream 2569732 48325100 ~ 48363926 (+)
G1747255 NA other downstream 3221958 48977326 ~ 48977758 (+)
G1747814 LOC106606817 other downstream 3690471 49445839 ~ 49446626 (+)

Expression


Co-expression Network