LOC110500580 (LOC106608767)


Basic Information

Item Value
gene id LOC110500580
gene name LOC106608767
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45772952 ~ 45778146 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577996.2
ATGAGTCGAAAATAGGTCGAAAATATACAGTAGCTTCAACATAGAAACTGTGAGGCTGTTGTCACATGGTAAAAGTGAGCATTTCCAGTTAGTTACTTCCGGAAACATGGAGGCTGTTGTCAGTGAATTGGTAGCTCCCGAAGACCTTTTGAAATTTGAGAAGAAGTACAATTCTGAATTGGTAAAGGGGGGCGTATCGAAGGAGACCAAGTTTGAATATGCATGGTGTCTGACCCGGAGCAAATATTCAGGCGACATCAAGAAAGGAATCGTATTGCTGGAAGAGCTGGTTAACAAGGGATCAAAGGACGATGCCAGAGACTTCCTGTTCTACCTAGCTGTGGCCAACTACAAACTTAAGGATTATGAGAAAGCTCTGAAGTACATCCGCACTCTCCTGAAAAATGAACCTGGGAACAAGCAAGCCTTGGAGCTGGAAAAGCTCATAGACAAGGCTCTAAAAAAAGATGGCTTGGTCGGCATGGCGATCGTCGGGGGAATCGGCCTGGGCGTGGCCGGACTAGCAGGCCTCATCGGATTGGCTGTGTCTAAGGGCCATGGTCCGAGGTCTTAATATGAAGTGTGGAGGGCCTTCACTTTACTAACACACGTCAAAGAAAGACTGACGACATGCATTCTCTTAACTTCTCCCCCATAACAAATTCAACTAAGGTTGGAAATGGATGGTGTTTCCAAAGATCAGAAGATCACCCAATGATCTTCCAAAAACATCCTACTCACATTCTCCATGGAATAATGTTTGGGGATTGGTTTCTGAAAATAGCCTTAATTTCACTTAAATTGTCTTTGTATTTTAACAGGTGTTTTGATTCCAGTGAATTTGACATGTGTATGTACAGAAGTATATTGTGCCACATTTTGTCTTCCATATTATGCAGTGTAAATAAGGGTGATGAAATATGTAGCTGAATGGAATGGCATGTCTTGACTTACTGCCCTCAGTATGTTAGTTAGCATGCCTCCTGAGCATATAATTATGGTGGATTTTGTAATCGACTTCTTTATAAGTGCAATGATACTTCAATTATTATTGTTCTCTGTATCATTCATTTAGAAAGAAAGCATTGTAGTTTAGGGAAGTGTCTTAGTTTTAGAGGTAAGTGTACTTGTGTTGTGATGTAGTGTCCACGCCGGTAGCAGTGTCTCTATTGTTGGTCAGAATTAGGCAGCTGTGATGTGGGTCACTCATATAATGCCCACAGGGGGCATCCTGTCTTAGGGATGCAAGTTGATGTTTACtgggatgagtcttgtcctggtGGCAGAACTGAGCAATTTCCGCTAGAtcggccagctgcaaagtcaaaattgtctacaTTGTGAAAATTAACGATAACAAAGAATAGGTTTTTGGtgttaaggttagcagtgtggttatatttaaaatctgattttattaCTTGGCTGTGCCAGCTGGTggccactctgcagagctgcctccagaataAGATTAATGACAAAAAAATCACTAACCTGCCTTAGGGATAGGGTCAAGATGAATACCCAACTAGTTTGTCTTTCATTTGCAGTGTACATGTAATAATAACAGTATTTATCCACAATCTAGCACCATTTACTCAAGTGATCGTAATAACAGGATACTAACatgattatgattgttttgtaTCTGgtgtaatataatacatcaacatTCCAAGACTTATCAACTTTTGATTGTCAAGGAATTAATTTAAAGTTGGTATGGTTTCTTAATGTACACATTTGGAAtgcactgttggagataggaTACATCATTGTCATCATAATCCTTGCAGATGTTCAGTATTAACCAACCACACGTTTGGGTCACTGCATGCTTTGTTGTGTTTTGAATTGTTATAAATGATCAACAGGTTGGAAGGAAATGAATAAAGGGCAGAGCTAGTATACACGCACAA

Function

NR:

description
mitochondrial fission 1 protein-like

GO:

id name namespace
GO:0000266 mitochondrial fission biological_process

KEGG:

id description
K17969 FIS1, TTC11, MDV2; mitochondrial fission 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577996.2 True 1919 mRNA 0.40 5 45772952 45778146

Neighbor

gene id symbol gene type direction distance location
cldn15a LOC106608766 coding downstream 6727 45763701 ~ 45766225 (-)
dnajc3b LOC106608764 coding downstream 9551 45756366 ~ 45763401 (-)
LOC110500575 NA coding downstream 33239 45735907 ~ 45739812 (-)
LOC110500574 LOC106608762 coding downstream 38660 45703162 ~ 45734292 (-)
si:dkey-19b23.8 LOC106608758 coding downstream 117996 45650089 ~ 45654956 (-)
zgc:103586 LOC106608798 coding upstream 371 45778517 ~ 45780181 (-)
LOC118942789 NA coding upstream 15292 45793438 ~ 45796870 (-)
LOC118942807 NA coding upstream 24543 45802689 ~ 45803599 (-)
LOC118942790 NA coding upstream 25556 45803702 ~ 45808549 (-)
LOC110500942 NA coding upstream 31289 45809435 ~ 45813290 (-)
G1743414 NA non-coding downstream 28387 45744140 ~ 45744565 (-)
G1743413 LOC106584613 non-coding downstream 32392 45740058 ~ 45740560 (-)
G1743409 NA non-coding downstream 36043 45736680 ~ 45736909 (-)
LOC110500592 LOC106608778 non-coding upstream 264098 46042237 ~ 46125028 (-)
G1743608 NA non-coding upstream 320272 46098418 ~ 46099413 (-)
G1743695 NA non-coding upstream 390941 46169087 ~ 46171732 (-)
G1743705 NA non-coding upstream 398057 46176203 ~ 46176412 (-)
G1743710 NA non-coding upstream 403144 46181290 ~ 46181496 (-)
G1743429 LOC105030512 other downstream 521 45770822 ~ 45772431 (-)
G1742845 dock11 other downstream 478213 45287791 ~ 45294739 (-)
G1742473 LOC106608730 other downstream 904309 44864416 ~ 44868643 (-)
G1741446 NA other downstream 1595250 44175184 ~ 44177702 (-)
G1743697 NA other upstream 393821 46171967 ~ 46173734 (-)
G1746833 LOC106608613 other upstream 2630345 48408491 ~ 48410753 (-)
LOC110500878 LOC102779023 other upstream 3642332 49392218 ~ 49424330 (-)
G1747906 LOC106608620 other upstream 3681542 49459688 ~ 49585178 (-)

Expression


Co-expression Network