zgc:103586 (LOC106608798)


Basic Information

Item Value
gene id zgc:103586
gene name LOC106608798
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45778517 ~ 45780181 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577997.2
ATAAGCGTGAGTTAGTCCCTTCTGATGTATGATACATTTGCAAGACAAAACCAACTTGTGCGCTGCTGCCTGGTGCCGTAATTTGAATGAAGTTGTCCTACTCTGATCTCCAATTTCTCAGTTTCAAAAGGATTCAATGTTGCATAGCCTACTTGTGGAAGACCCGTTTCGATTccaactgatatggcagGCACAGACAACGCAAAAGTCAAGGAGCTCGTTTTAAAGTGCATGCATGCACGGGAAATGGCATATTGCCCTTACAGCCGGTTCCCGGTCGGTGCCGCCATATTGACAGCAGATGGCGCTATAATTACGGGTTGCAATGTGGAAAATGCCTCTTTTGGGCTCACAGTGTGTGCTGAGCGAACAGCAATACAGAGAGCCGTAGCAGAGGGACACAGGAAATTCAGTGCTATCGCTGTTACATGtgaCATCAAAGATAGTTTTGTTGGACCTTGTGGAGCTTGTCGGCAGGTGCTCATTGAGtttGGAACAGATTGGGTTGTGTACTTGACTAAGCCAGATGGCTCATACAAAGAAACCAGCCTCAAAGAACTGCTCCCTCTAGCTTTCTCCCCAGCCCACCTAGGACATTAACTGACACAGCCAAGGACATAGCCATAGTTAGCCTACACAGTTACAGTAATTCACACTGTATAGATATGATATTACACATTCAAAATACTTCTTCTCGCCACATTCCAATTGGACGTAGTGGTACAGCCAGGCAGAATTTATATTTAGAAATATTATATACCATTTTTTTTCAGAAGAGGAAATACAACTATGTTCAACTACCATTAAAATGACTGTTTgcattaaataaaaacatatgaTTTTAACGTT

Function

NR:

description
cytidine deaminase-like

GO: NA

KEGG:

id description
K01489 cdd, CDA; cytidine deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577997.2 True 849 mRNA 0.43 5 45778517 45780181

Neighbor

gene id symbol gene type direction distance location
LOC110500580 LOC106608767 coding downstream 371 45772952 ~ 45778146 (-)
cldn15a LOC106608766 coding downstream 12292 45763701 ~ 45766225 (-)
dnajc3b LOC106608764 coding downstream 15116 45756366 ~ 45763401 (-)
LOC110500575 NA coding downstream 38804 45735907 ~ 45739812 (-)
LOC110500574 LOC106608762 coding downstream 44225 45703162 ~ 45734292 (-)
LOC118942789 NA coding upstream 13257 45793438 ~ 45796870 (-)
LOC118942807 NA coding upstream 22508 45802689 ~ 45803599 (-)
LOC118942790 NA coding upstream 23521 45803702 ~ 45808549 (-)
LOC110500942 NA coding upstream 29254 45809435 ~ 45813290 (-)
LOC110500582 LOC106577643 coding upstream 34885 45815066 ~ 45836958 (-)
G1743414 NA non-coding downstream 33952 45744140 ~ 45744565 (-)
G1743413 LOC106584613 non-coding downstream 37957 45740058 ~ 45740560 (-)
G1743409 NA non-coding downstream 41608 45736680 ~ 45736909 (-)
LOC110500592 LOC106608778 non-coding upstream 262063 46042237 ~ 46125028 (-)
G1743608 NA non-coding upstream 318237 46098418 ~ 46099413 (-)
G1743695 NA non-coding upstream 388906 46169087 ~ 46171732 (-)
G1743705 NA non-coding upstream 396022 46176203 ~ 46176412 (-)
G1743710 NA non-coding upstream 401109 46181290 ~ 46181496 (-)
G1743429 LOC105030512 other downstream 6086 45770822 ~ 45772431 (-)
G1742845 dock11 other downstream 483778 45287791 ~ 45294739 (-)
G1742473 LOC106608730 other downstream 909874 44864416 ~ 44868643 (-)
G1741446 NA other downstream 1600815 44175184 ~ 44177702 (-)
G1743697 NA other upstream 391786 46171967 ~ 46173734 (-)
G1746833 LOC106608613 other upstream 2628310 48408491 ~ 48410753 (-)
LOC110500878 LOC102779023 other upstream 3640297 49392218 ~ 49424330 (-)
G1747906 LOC106608620 other upstream 3679507 49459688 ~ 49585178 (-)

Expression


Co-expression Network