LOC110500942


Basic Information

Item Value
gene id LOC110500942
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45809435 ~ 45813290 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957983.1
ATTTCTGcacttctattctctctctcctagacgAGGATAACTCTGATCTATACGCGTTAGCAAACCAGCAGTGAAGAGTTAAGTAATGATGGTTCAATTGTAGCATTGTGTCAACAATAGATATATTTAGTTAGCCTATGTGACTGTGGGGAGTGTGACGGTGGGGAGCCTAGAAACTGACTGGAGTGGGAGTAAAGAGAAGATACTGCCGAAGTGCAGAAGGGACACACAACGACTACAGTGTTATCACTTCTTGTCTTCatgaaaaagtacattttacattttgtCTCATCCGCCATTCAGGTCAATCCCACCAATCTGTGTCACGCACCATGGGCAGATGTATCGAAGTTTGCAAGCTGGTCTTATGGGTTGCAGTTTGTGTGACCTTCATTGTCATGGGTGCTGTGTACGCTGATGACTGCCCAGTGAAACGTGTCATCCCTATCCACATGATCATTTCTGGATCTTTCGGGCTCCTCTATGTATTCTTCTCCTGCTGCAAGGACCGTGTTGTGTGCCAACATTTGTCTAAACTATTTTGGTTCATGATCATCATCTGGCTCATTATTGGCCATTTTTGGACCTTCTCTGTATTCCAACCCAACTACGCACGGAAAGAGATCATCGGCAACACAGTATACTGCAACAAATCTCTATACCTCTTTGTGGCCTCTACCACCATCATATTGGACATTATTATATGTATGTGGCTGCTTGTGTTGTTTGATGTATGTCCATGCTTCATACTTTGTCTGGTCTGCTGTGTCTCTTTATGCAAGTCTGACGATGGCAAACCTGTGCAGGTTGTTGAGCCTTTGACGGTTGTGGAGACTGAGGACTGTGTTGAACCTAAGGAGTGCGTGTGGACTGAGGTGTGTATGGGGATTGAGGTGTGTGTGGAGACTCAGGAGAGTGTGGGGCATGACGAGAGTGTGAAACATGAAGAGAGTGTGGAGTACGTGGAGAGTATGGAGTATAAGGAGTATGTGGTAACTGGGCAGAGTGAGTCCAACACTGCTCATTATTAATGCAATTCACTATTCACAATACCAATAGTAATTTACATTAATTTGTCTATTTTGGGGGGTGAGATCATGTAAAAATGTAGATGTCATCATAAAAAAATAAGCAATCAATGGGTCAATTTGTGCCATTATGTTACCAAAAATCTGAagattaaaataaaaatattaattCCCACTTTGATTTTCAAGATTTAAAATGTACCTTGGTAGACAAATATTATCGTTACCATTTTTGAGCAGAATGATAATCATTTGGCTAATAGGCTGCTGTTCCACTTCACAAACACCCGCCCTGAAATAGTTTAGTGGAACGGCCCATCAATGAAAACGCACACCCAAAGAAAATGGACTGGTGTGTTAAAATGCCTGGGCCGACTATTGGTCCGATTTTGCCCCTGCTGTAGTTCGTAAATCATTACAATTATAATAACTAACTGGATCAAATTGTGTGACCATCATCTTAGTGCTTGACAAATACGAGGCCtaagcacaacgcctctcccctatttgacctagatagtttgtgtacGTATTAATATGTAGGCTAAGTGTAACCGATATGAAAtgtctagctagttagcggtggtgcccgctaatagcgtttcaattggtgacgtcactcgctttgagaccttgaaaTAGTGGTTCCCCGGCTGCgcattttgtggagcgatgggtaacgatgcaccgagggtgactgttgatgtgtgcagagggtccctgggtcgagcccaggttggggcgaggagagggatggactCAAGTTATATTGTTACATAAGTGTGCCTTTTGtaagaaataaaataatttatgtagttctgtccttgagctgttgtctattaatgttctgtattatgtcatgtttcatgttttgtgtggaccc
>XM_021578447.2
accaatacaTTTTATCCATAATTTCGCTTCATATGACAAGAATTGAAAGGATTTGCCAGTCGATTGTCGACGTGATTCATGATGAAGACTGcatgtctagcttgctagctaagattttgaaagtatgatgttgtcatgatcagtccaatcaaagctacggtagatataacgtgatttgacatcattttatctgtggctaatgaccttgagccttcttggatgggcatttctaatgtaactctatggcagcatccAAGGCGCTTGAATTTTCCAGCTCTCCCCATAGATTTTGCCGTGACGTacagtagtgtccccatgagtgacagaacactgagccaatcatatCGCAACTGGAGAACATTACCAAACTGGcttccccaccaccacagaaagcactgagctaagctgaaacacctgcattttggagatcccttactcaagaaagcaaaaaagagaccatgcagctttattaactgaataattaaaaaatagatatatttaTATGTGACAGGAATTAATGCCACTGCTGAATACAACTGCAACTTTAAATCAATATAGTGTTTGTGTTTGAATTAAGATGCAGGATTAAGATGTCAGATCTGCTGCCACCCACAAGATGCAGTAGTGATAAAGTCCGGAGAATGTGGAGTTTCTTATCATTCATCAAACTGAAAGTACTACCTTTAGATTCATACTGTTACAGTAAGGTCACCGTAGTTCCCTTTTTTTTAGCCACGTTCCAATTCCCTTTTCACTTCTGCATTTATAGTTGATTTGGTGTTCAGCAGCGTAAGTGTCTGACCACTAAAGAGAACGCAAGTtctacagctacaacagGTCAATCCCACCAATCTGTGTCACGCACCATGGGCAGATGTATCGAAGTTTGCAAGCTGGTCTTATGGGTTGCAGTTTGTGTGACCTTCATTGTCATGGGTGCTGTGTACGCTGATGACTGCCCAGTGAAACGTGTCATCCCTATCCACATGATCATTTCTGGATCTTTCGGGCTCCTCTATGTATTCTTCTCCTGCTGCAAGGACCGTGTTGTGTGCCAACATTTGTCTAAACTATTTTGGTTCATGATCATCATCTGGCTCATTATTGGCCATTTTTGGACCTTCTCTGTATTCCAACCCAACTACGCACGGAAAGAGATCATCGGCAACACAGTATACTGCAACAAATCTCTATACCTCTTTGTGGCCTCTACCACCATCATATTGGACATTATTATATGTATGTGGCTGCTTGTGTTGTTTGATGTATGTCCATGCTTCATACTTTGTCTGGTCTGCTGTGTCTCTTTATGCAAGTCTGACGATGGCAAACCTGTGCAGGTTGTTGAGCCTTTGACGGTTGTGGAGACTGAGGACTGTGTTGAACCTAAGGAGTGCGTGTGGACTGAGGTGTGTATGGGGATTGAGGTGTGTGTGGAGACTCAGGAGAGTGTGGGGCATGACGAGAGTGTGAAACATGAAGAGAGTGTGGAGTACGTGGAGAGTATGGAGTATAAGGAGTATGTGGTAACTGGGCAGAGTGAGTCCAACACTGCTCATTATTAATGCAATTCACTATTCACAATACCAATAGTAATTTACATTAATTTGTCTATTTTGGGGGGTGAGATCATGTAAAAATGTAGATGTCATCATAAAAAAATAAGCAATCAATGGGTCAATTTGTGCCATTATGTTACCAAAAATCTGAagattaaaataaaaatattaattCCCACTTTGATTTTCAAGATTTAAAATGTACCTTGGTAGACAAATATTATCGTTACCATTTTTGAGCAGAATGATAATCATTTGGCTAATAGGCTGCTGTTCCACTTCACAAACACCCGCCCTGAAATAGTTTAGTGGAACGGCCCATCAATGAAAACGCACACCCAAAGAAAATGGACTGGTGTGTTAAAATGCCTGGGCCGACTATTGGTCCGATTTTGCCCCTGCTGTAGTTCGTAAATCATTACAATTATAATAACTAACTGGATCAAATTGTGTGACCATCATCTTAGTGCTTGACAAATACGAGGCCtaagcacaacgcctctcccctatttgacctagatagtttgtgtacGTATTAATATGTAGGCTAAGTGTAACCGATATGAAAtgtctagctagttagcggtggtgcccgctaatagcgtttcaattggtgacgtcactcgctttgagaccttgaaaTAGTGGTTCCCCGGCTGCgcattttgtggagcgatgggtaacgatgcaccgagggtgactgttgatgtgtgcagagggtccctgggtcgagcccaggttggggcgaggagagggatggactCAAGTTATATTGTTACATAAGTGTGCCTTTTGtaagaaataaaataatttatgtagttctgtccttgagctgttgtctattaatgttctgtattatgtcatgtttcatgttttgtgtggaccc
>TU1996524
gagctaagctgaaacacctgcattttggagatcccttactcaagaaagcaaaaaagagaccatgcagctttattaactgaataattaaaaaatagatatatttaTATGTGACAGGAATTAATGCCACTGCTGAATACAACTGCAACTTTAAATCAATATAGTGTTTGTGTTTGAATTAAGATGCAGGATTAAGATGTCAGATCTGCTGCCACCCACAAGATGCAGTAGTGATAAAGTCCGGAGAATGTGGAGTTTCTTATCATTCATCAAACTGAAAGTACTACCTTTAGATTCATACTGTTACAGTAAGGTCACCGTAGTTCCCTTTTTTTTAGCCACGTTCCAATTCCCTTTTCACTTCTGCATTTATAGTTGATTTGGTGTTCAGCAGCGTAAGTGTCTGACCACTAAAGAGAACGCAAGTtctacagctacaacagGTCAATCCCACCAATCTGTGTCACGCACCATGGGCAGATGTATCGAAGTTTGCAAGCTGGTCTTATGGGTTGCAGTTTGTGTGACCTTCATTGTCATGGGTGCTGTGTACGCTGATGACTGCCCAGTGAAACGTGTCATCCCTATCCACATGATCATTTCTGGATCTTTCGGGCTCCTCTATGTATTCTTCTCCTGCTGCAAGGACCGTGTTGTGTGCCAACATTTGTCTAAACTATTTTGGTTCATGATCATCATCTGGCTCATTATTGGCCATTTTTGGACCTTCTCTGTATTCCAACCCAACTACGCACGGAAAGAGATCATCGGCAACACAGTATACTGCAACAAATCTCTATACCTCTTTGTGGCCTCTACCACCATCATATTGGACATTATTATATGTATGTGGCTGCTTGTGTTGTTTGATGTATGTCCATGCTTCATACTTTGTCTGGTCTGCTGTGTCTCTTTATGCAAGTCTGACGATGGCAAACCTGTGCAGGTTGTTGAGCCTTTGACGGTTGTGGAGACTGAGGACTGTGTTGAACCTAAGGAGTGCGTGTGGACTGAGGTGTGTATGGGGATTGAGGTGTGTGTGGAGACTCAGGAGAGTGTGGGGCATGACGAGA

Function

NR:

description
uncharacterized protein LOC110500942

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957983.1 False 1911 mRNA 0.42 4 45809435 45812429
XM_021578447.2 False 2445 mRNA 0.42 5 45809435 45813290
TU1996524 True 1070 TUCP 0.43 5 45810413 45812893

Neighbor

gene id symbol gene type direction distance location
LOC118942790 NA coding downstream 886 45803702 ~ 45808549 (-)
LOC118942807 NA coding downstream 5836 45802689 ~ 45803599 (-)
LOC118942789 NA coding downstream 12565 45793438 ~ 45796870 (-)
zgc:103586 LOC106608798 coding downstream 29254 45778517 ~ 45780181 (-)
LOC110500580 LOC106608767 coding downstream 31289 45772952 ~ 45778146 (-)
LOC110500582 LOC106577643 coding upstream 1776 45815066 ~ 45836958 (-)
LOC110500586 LOC106608770 coding upstream 80048 45893338 ~ 45925598 (-)
LOC110500587 LOC106608771 coding upstream 115525 45928815 ~ 45940039 (-)
LOC110500589 LOC106608774 coding upstream 153461 45966751 ~ 45981315 (-)
LOC110500590 LOC106608773 coding upstream 168158 45981448 ~ 46003506 (-)
G1743414 NA non-coding downstream 64870 45744140 ~ 45744565 (-)
G1743413 LOC106584613 non-coding downstream 68875 45740058 ~ 45740560 (-)
LOC110500575 NA non-coding downstream 69623 45735907 ~ 45739812 (-)
G1743409 NA non-coding downstream 72526 45736680 ~ 45736909 (-)
LOC110500574 LOC106608762 non-coding downstream 104177 45703162 ~ 45734292 (-)
LOC110500592 LOC106608778 non-coding upstream 228954 46042237 ~ 46125028 (-)
G1743608 NA non-coding upstream 285128 46098418 ~ 46099413 (-)
G1743695 NA non-coding upstream 355797 46169087 ~ 46171732 (-)
G1743705 NA non-coding upstream 362913 46176203 ~ 46176412 (-)
G1743710 NA non-coding upstream 368000 46181290 ~ 46181496 (-)
G1743429 LOC105030512 other downstream 37004 45770822 ~ 45772431 (-)
G1742845 dock11 other downstream 514696 45287791 ~ 45294739 (-)
G1742473 LOC106608730 other downstream 940792 44864416 ~ 44868643 (-)
G1741446 NA other downstream 1631733 44175184 ~ 44177702 (-)
G1743697 NA other upstream 358677 46171967 ~ 46173734 (-)
G1746833 LOC106608613 other upstream 2595201 48408491 ~ 48410753 (-)
LOC110500878 LOC102779023 other upstream 3607188 49392218 ~ 49424330 (-)
G1747906 LOC106608620 other upstream 3646398 49459688 ~ 49585178 (-)
LOC110500619 LOC106608618 other upstream 3686201 49493629 ~ 49502064 (-)

Expression


Co-expression Network