LOC110500582 (LOC106577643)


Basic Information

Item Value
gene id LOC110500582
gene name LOC106577643
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45815066 ~ 45836958 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577998.2
tcatggtgaaatccctgaatggtttccttcctctctggcaactgagttaggatgaGCACCTGTGTCTTTGTCGTGACTGGGtgagtattgatacaccatccaaagtgtaattaataacggAACCATTCTTTCTCTATAGACACCAATAGAATGAGAGGACTTTGTAACATCATGTTCTAACTACTGAAATGAGCAGACATTCTCTTCGctgttcccccctctcctctctcaatccccatctttttctctctcaatccCGGTCTCCTcgttttctctctcaccctcagtATGCCAGAGAGAGTGTGTTGGTTCCAGGGGCAGAGTTACCACAAGCTGAAGAGGGCATGTCTGCAGCGGGGAAAGCTATTCAAGGatcccctctttcccccatccGCACTGTCACTCTTCTACAAACGAGCCCCACCCCCTGGACTCACATGGAAAAGACCACGGgaactGTGTAAGGACCCTCATCTCTTTGTGGACAGGATCAGCACATGGGACCTGCACCAAGGCAGCTTAGGTAACTGCTGGATGGTGGCAGCCACTTCCTGTCTGGCCTCGGAGCCATCgctgtggaagaagGTGATTCCTGATCACGTGGAACAGGAGTGGAAGCCCAAGCGTCCAGACCTGTACGCCGGAATCTTCCACTTCCGCTTCTGGCGGCTTGGCCGCTGGACAGACGTGGTGGTGGACGACCTCCTTCCGGTCAGCGAGGACGGAACGCTGCTCTTCTGCCGCTCAGCCACGCCACGGGAGTTCTGGAGCAGCCTGCTGGAGAAGGCCTACGCCAAGTTGAATGGCTGCTATGAGGCATTAGAAGGCGGTAACACGGCGGAGGCCCTCATAGACTTCACAGGTGGGGTGTCGGAGCCCCTATGCCTGGACAGGGAGGCCCTCACCCTGCACCCCGACCAGAGGAGGGCGCTGTTCCAGACCCTGGCCAAGGCCCACGGATGCAAAGCCCTCATCACCTGCTCCATACGGccagcggagggagagagagtagagtcgGTGCTAGACTGTGGTCTGGTGCGGGGCCATGCCTACGGTATCACCGCGGTGAGGAAGGTGCGTCTGGGGAAGCGGTCACTGCTGACTGGCCGTTGTAGCGGGACGTCCCGTCTCGGCATGGTGCGCATGAGGAACCCCTGGGGTACAGCCGACTTTACCGGGCCCTGGAGTCAGGGGTCTCAGCAGTGGAAGCAGGTTGGTCGTGATGAGAGGGAGAAGATGGGCCTCATTGTCAGAGATGTGGGAGAGTTCTGGATGGAGTTTGAGGATTTCTGCCGCTACTTCACAGATGTGGTGGTGTGTCGTCTGGTAGAACGAGCCCTGCTGTGGCCCAACACCCACTGGAGAGAGGTTCGCTGCCATGGGGAGTGGGTCCCATCCCCCAATACTACCGGAGCAACCCCCGCCACCCTCCTCCCAGGCCGCCAGGCATCCAACCTCGGGAAGAACACAGCCAAGCCTGGGGAGGTGAACCAGACTCCGCGAGGGGACCGGAAGGAGGCAAGAttggggaagagacggagaggtggaggaggagaaggaggaggcggtggagggagagagaaggtggcTGTAGCgaagagggggggggagaagaagacaaagaggaaggaggagagtgtgaagaaggagggagaggtggatggatggtGGGATAAACACATGGATAAGAGGAGTAGGTGTGGAGGATGCATCAACCACAAAGACACCTTTCTACACAACCCCCAGTTCATGTTTGAGGTGCAGGGAAAGGAGGATGAGGTGTTGATCTGTCTgcagcaggaggacaggaggataaagaggaaggatggaggaggagcgAATCTGCCCATCGGCTTTGAGGTGCTGAGGGTGGAGGTGAACCGTCTAAGCCGTGTGCAGCGTGTGGTGGAGCAGGCTGCAAGCTCTGTGTACATGGACTCCCGTAGCGTTGCCCTGCGAGTGACCCTGGTCCCCGGCCGCTACGCCCTCCTCCCCACCACCTTTCAACCTAGGGCCACCGGACGCTTTCTGCTTCGTCTCTTCTCACATTCACACCTCAGACTCAGtgagttGAGACAGGAGTTGCCTGCTCTGTCAGTGTGGCAGTGTTGTCTCCCCCAGTCCAGTGTCGTGACCACCGTCCACCTGCGCCGAGCTTGCGGACTCAGCCAGCCCAAACAGACAGCACCAGATGTGTATGCTGTGATCTGTTGTGAAGACGACACCATAAGAACACGAGTGTTCAAGGAGGATGGAAATCCAGAGTTCAATATGAGGGCCATTTTCTACAGGAGACACCCAGATGCACACATCAGCATTAAgttgtggAGCCGTGGTCTACTTTGGGACACTCTATTAGGAGGGGCTCGACTCCAGACCggcgacagcgagagagagcggagcCAGGGGATTGACCTGCAGGGCGGCCAATCACATTCAGGATACCAGGGATGCATCTATGTGGAAACCTCATCCAGCAAATGCCTGACAGACTTGTGACAGACAGCTGTGGCTTGTCCCACCCACTACACAACCATGGCAATCACTGCTTTTCTGGATGAAGCAGCGGATTTGAATGAGGATGGATCCAATTCAATAGCTTTGAAGGAAAATAGACATTTGTCTTCGGCTTCCATGAATTACAAAGACAAATACCTCTTTGAATGAAATGTTATGAGAACTCGGGAACTACTGCGTTAAGGAACAGAAAAGcacagtgatctgtttgttgttcaCTACTAGTGCAGAGGAGATCATAAAATCATAAAAATATCCCTTAACTTTACATCTCTGCTGGTCAGACCATGTAAGAGTACAACATTatccaaaaaacaacaacatttaaacTGTAAAAAGACATTGATTACCAGCTGCCGAGGTTATCTAAGGAATATACATAACATATGTAGGTCTACTCTTTTTTTTATGTGTCATGAAAGGTGCATAATTTTAGGAAAAACATTTTGATCAATTAAAATGTCATTTTCCTCTACAAACTGACCATTATAtagatgttttatttcaccttaataTGGTATGCTATATTTTCAAATATTTATTTGAAAAAGATACATAGTTCAACGTGGGATTTTGTTTTTTGAATTAATGTGAACAAGAGTATAACCTAACCTGTCTCTTCTAGCCGTATTCACAATCAACTATCAGGTTTcaggtatgacccagatgcagacagtgtcgatgaaacaaaagtttatttctagtacaggggcaggcaaacgacaggtcaacggcaggcagaggtcagtaatccagagagggTACAAAAGGCCCAGAACGGCAGGaagactcagggtcagggcaggcaagggtcaataatccagagggtacaaaaggtccagaacggcaggaaGTCTCTtggtcagagcaggcaggggtcaataatccagtgaggTGGGGCAAGGTatagaacggcaggcagggtcaggggtcagggcaggcagaacggtcaaaactgggaagggagagagggattttTGATTCCTCTCCCAAAAAATTATAGTCATATTCTGTCATGCATGAGAGTCAGAAATTGTGAGAGACATTGCTAAAGTGGGTGTGGGCAAACatttaaattgtaaaaaaaaattgagttGAATGCTAAAAAAAGAATATTGTACACAGTATTATCAAAGACTTTTATAACTAACCAAGATAGACTCGAGACTGTCTTTTCAAATGGGAGCAAACTGGgattcctctcatcaccatatttggtattTGGTAGAGTGCAAACGCCAatcggatgcttcacatttatacatctggtgaaatatctgtctcattgttctatctgtggtatGATCAACTTAATTACTCCAAATGCAAAGCACTTTGAGGCAAAGTGTTGATTAGAATGAGTACAAAAGAGAGAAACATATTGTATAGAacttaaaaaatatttgttctgTTGTGAGTAGAGAATTGAGGCAGCTTTATACATTACATTTCTATAGGCTGTTGATGACCAAACCTGGGTTGAAATCTTTCCAATACTTTGAGCCTGGAGTGCAAGGTATGAGGGATTTGCACTTTTGAGacttttctattggttccatttcAACAGGCAACCTAAATCAATTACAGATACAGTGAATgacttcaaatagtatttgaacgcAGATCTGTTGATGACAAGGACCATAATACAGCATCCTATGGAATGTTTGTGTCAtggctctctttctccctctgactTTCCTGAAtaccagtggtgattttagcatgtcaatCTTGGTGAAGCAAACTCCCCAAATGTTTCGTTGTTGATGCATGCcaacaaagccactacacaacacaacactaaacaatgcattcattgcactataacggtgacaaacggtgcacacaaactgttagggcctacataaagctgtcccaacagcagagctttcttttcagcatcatggagtgaatccttaccatcACTACACCTGGCTTTCAGCGGAGTCTTGTCTAGCAGCAAATCAGTTAATTCAGTCTTATTTACTGTCTTTAAAAAATAGAtatctgatatggctgacttgcttaaacaaatgtggtttctactgacaaatgagatgtacaaacta

Function

NR:

description
calpain-5-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577998.2 True 4589 mRNA 0.49 12 45815066 45836958

Neighbor

gene id symbol gene type direction distance location
LOC110500942 NA coding downstream 1776 45809435 ~ 45813290 (-)
LOC118942790 NA coding downstream 6517 45803702 ~ 45808549 (-)
LOC118942807 NA coding downstream 11467 45802689 ~ 45803599 (-)
LOC118942789 NA coding downstream 18196 45793438 ~ 45796870 (-)
zgc:103586 LOC106608798 coding downstream 34885 45778517 ~ 45780181 (-)
LOC110500586 LOC106608770 coding upstream 56380 45893338 ~ 45925598 (-)
LOC110500587 LOC106608771 coding upstream 91857 45928815 ~ 45940039 (-)
LOC110500589 LOC106608774 coding upstream 129793 45966751 ~ 45981315 (-)
LOC110500590 LOC106608773 coding upstream 144490 45981448 ~ 46003506 (-)
LOC110500875 LOC106608799 coding upstream 166598 46003556 ~ 46004815 (-)
G1743414 NA non-coding downstream 70501 45744140 ~ 45744565 (-)
G1743413 LOC106584613 non-coding downstream 74506 45740058 ~ 45740560 (-)
LOC110500575 NA non-coding downstream 75254 45735907 ~ 45739812 (-)
G1743409 NA non-coding downstream 78157 45736680 ~ 45736909 (-)
LOC110500574 LOC106608762 non-coding downstream 109808 45703162 ~ 45734292 (-)
LOC110500592 LOC106608778 non-coding upstream 205286 46042237 ~ 46125028 (-)
G1743608 NA non-coding upstream 261460 46098418 ~ 46099413 (-)
G1743695 NA non-coding upstream 332129 46169087 ~ 46171732 (-)
G1743705 NA non-coding upstream 339245 46176203 ~ 46176412 (-)
G1743710 NA non-coding upstream 344332 46181290 ~ 46181496 (-)
G1743429 LOC105030512 other downstream 42635 45770822 ~ 45772431 (-)
G1742845 dock11 other downstream 520327 45287791 ~ 45294739 (-)
G1742473 LOC106608730 other downstream 946423 44864416 ~ 44868643 (-)
G1743697 NA other upstream 335009 46171967 ~ 46173734 (-)
G1746833 LOC106608613 other upstream 2571533 48408491 ~ 48410753 (-)
LOC110500878 LOC102779023 other upstream 3583520 49392218 ~ 49424330 (-)
G1747906 LOC106608620 other upstream 3622730 49459688 ~ 49585178 (-)
LOC110500619 LOC106608618 other upstream 3662533 49493629 ~ 49502064 (-)

Expression


Co-expression Network