LOC110500587 (LOC106608771)


Basic Information

Item Value
gene id LOC110500587
gene name LOC106608771
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45928815 ~ 45940039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957988.1
CTTTTATAATAGGAACCGATCTTACAGCTTTCCGCATTGACCTTATAGATGTGCTCATCGGTTCTTTGGAATAGCCTGCTGCACACAGTTGTTCACTCTGCTGCAACCAGTGTCCACCCTTTCTCTACTCAGGCTGTAGTTGAATACTAAGAAAGccATGGCTGTCCAGCAGCAGATCACCACTGTAACCACCACCCAGAGCTCAGGGCAATGGAGCACAGGACTGTTTGACTGCTGCTCTGACATGGGCACATgtTGCTGTGCCACTTGGTGCTTCCCCTGTTTTCAGTGTCAGACGGCCTCCCACTACGGCTGGTGTGCCTGTATGCCCCTGCTGGACCCATGTGCCTTTATGGCTGTCTCCTGCTGCTTGCGCTCCTCCATGAGAGAACGCTATGGCATCCAGGGTTCGACCTGCGTGGACGTCGGGTTGGTGTGTTGCTGCTACGCTTGTGCCTGGTGCCAGATGGCTCGTGAGGTTAAGACACGGACCACATCAGGCATCCAGCAGGTTCACATGGTCACCCAACAGCTTCACGTGGCTTAGGACCCAGAGAAGAGAGTGGTAAACTAGATGGCCAAGCAAGAAGTGCAATTTCACCAGAAATGTTGAGCAAGTGCTTTAACTTTTTGTTCCTTATCTTGCGTGACGGTTAACATGGGGGCGTACTGTTTGCATTTTATTGTTTGAAAAAGAACACACTTCCATAATCTTGCTATCATGGCTGAACAGTGACGTCCATGAATGAGGGCCATGCATATAATACCACTCCAATCTATAGCAACCATACTGTGTGTTGAATGTACTGTATACTTCAGATGTGTCTTTAGGAGAGAAATGCTATACCatcattaatgtcttaataaCCATTGAATGTTCATGTCAGGCTTAAAACATTTTCAACAGCTTACCATGTACTTGCCCTTCTTGTGCACTTGTCTTTTCTTCTTAGTCCTGACTTTGCTGAAAGCTCCTCCATCAAGGAAAGGTTTGCTTAAAatgactgtgatgtgtggttgtcttacctagctaccttaagattaatgatatgtggttgtcttacctagctaccttaagattaATGATATGTGCTTGTcttacctagctaccttaagatgaatgataTGTGCTTGCCTTACCTAGCTACCTTAATATTAATGCTCTGGAAAAGTGTGCCTGCCAAATGACTAAATGTGTAACCCGTGATTCAAATGCCAACCACATTTCAGTTGAGTGTTCTTATGTTTCaatccctttaagagtgtgctcctaatctcagcttgttacctgtataaaatacacctgggagccagaaatctttctgattgagagggggtcaaatacttatttccctcattaaaatgcaaatcaatttaaaaaaaatttgacatgcgtttttctggatttctttgtcgttattctgtctctcactgttcaaataaacctaccattaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957988.1 True 1456 mRNA 0.44 4 45928815 45940039

Neighbor

gene id symbol gene type direction distance location
LOC110500586 LOC106608770 coding downstream 3217 45893338 ~ 45925598 (-)
LOC110500582 LOC106577643 coding downstream 91857 45815066 ~ 45836958 (-)
LOC110500942 NA coding downstream 115525 45809435 ~ 45813290 (-)
LOC118942790 NA coding downstream 120266 45803702 ~ 45808549 (-)
LOC118942807 NA coding downstream 125216 45802689 ~ 45803599 (-)
LOC110500589 LOC106608774 coding upstream 26712 45966751 ~ 45981315 (-)
LOC110500590 LOC106608773 coding upstream 41409 45981448 ~ 46003506 (-)
LOC110500875 LOC106608799 coding upstream 63517 46003556 ~ 46004815 (-)
LOC118942937 NA coding upstream 71396 46011435 ~ 46017296 (-)
LOC110500592 LOC106608778 coding upstream 102198 46042237 ~ 46125028 (-)
G1743414 NA non-coding downstream 184250 45744140 ~ 45744565 (-)
G1743413 LOC106584613 non-coding downstream 188255 45740058 ~ 45740560 (-)
LOC110500575 NA non-coding downstream 189003 45735907 ~ 45739812 (-)
G1743409 NA non-coding downstream 191906 45736680 ~ 45736909 (-)
LOC110500574 LOC106608762 non-coding downstream 223557 45703162 ~ 45734292 (-)
G1743608 NA non-coding upstream 158379 46098418 ~ 46099413 (-)
G1743695 NA non-coding upstream 229048 46169087 ~ 46171732 (-)
G1743705 NA non-coding upstream 236164 46176203 ~ 46176412 (-)
G1743710 NA non-coding upstream 241251 46181290 ~ 46181496 (-)
G1743429 LOC105030512 other downstream 156384 45770822 ~ 45772431 (-)
G1742845 dock11 other downstream 634076 45287791 ~ 45294739 (-)
G1742473 LOC106608730 other downstream 1060172 44864416 ~ 44868643 (-)
G1743697 NA other upstream 231928 46171967 ~ 46173734 (-)
G1746833 LOC106608613 other upstream 2468452 48408491 ~ 48410753 (-)
LOC110500878 LOC102779023 other upstream 3480439 49392218 ~ 49424330 (-)
G1747906 LOC106608620 other upstream 3519649 49459688 ~ 49585178 (-)
LOC110500619 LOC106608618 other upstream 3559452 49493629 ~ 49502064 (-)

Expression


Co-expression Network