LOC110500589 (LOC106608774)


Basic Information

Item Value
gene id LOC110500589
gene name LOC106608774
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45966751 ~ 45981315 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578006.2
GTTTGGgtcaagtaggtcacatgaccaaggagctattgaaattcaaatGTAAAAAGAGTTTGTACTTTGTTCACGCTCCCTAACTAATTCAACTAAGAATAAAAAATGCTGCTCACaatttccacatgtttattagctTTGGAAAGTGAATTAATGTCAATCATGAAAATAGACCTGTGCAACGTCCTGCGCAATTTTTCCAACATAATGACACTTATTTGGAGCCTGTGGCTCAAGTCAATAGCTTTCAAACTACATTTGAAAGCGTGAATATCCGTTGAATATCCAACTTCAAACCTTCTTTACCTTGGTGTCCAAAATACAATAGTCGACttcagttactgcacttttatggcagtttcaaaactgcaatcttttttttgtaagggcattaaggattccatctttaaaagtcagttaagaacttgcCTTCTGCCTGTAAGAAGCCACCTCGCTGTGAAGGGGTTGCTGGAAGGGTTAGCTAGTGTTGTGGCAACCAGCTGGTTTTCCGAAAACAAGATAATGAATTGAGATGAATCTGCCTGAATCCTGCTTTGGCAAGAATCAACATGTCTggttgcatgcacacacacacacacacacactgccctgccCAATTCCCAGCAGTATGTATATTCATCACTTTTCAGGTAGAACAAATTACCAGCAGTACTCCGGAGCTTTTTATAACCTCTGTGATCGAGACCTCAATCACTATCCTGTGACCAATCAGATCTGAGGCAGTGTTGCATTGTTCTCTCAGTTTGGGAGACCACTGCTTGACAATTCTGAGATCCTTACCTTTGGAATTCCGTGCAGGACAACATGATTTTGAAACATTTGAAATGTATCTTGGTTCTACAATACTTTATTCGTTTCGTCGCAACAGAGATTGCAGCTGAAAAAGCTCTCCCTGAGCCGCTCAACCTGTCATTGACGTGGGAGTCTGAATTCCGTATAAAGCTGTCGTGGAACGCACCAAATAATTTAAATGCATCATGCAAGGTGAACTACATGATCACTACAACGATCGGAGAGAGGAGACCCAAAGTAGAGACAACTTTGAAGTTGTATAAAGAGTATAGACTCTCTACGGAAGATGCAGTGAATTACACAGTGCAAACAAACCCCAAACACTGTACAGGTAGAACCATAAGCAAACCTGTCAGCAAATCCATCACTAAACCCACAGAGTTGGTGAAGAACTTCCAGTGTTCCCTCTACTCCTCTAAGGCCATGAACTGCAGCTGGCTTCCAGTCAATCAGGCCTCAGACCTCCAGCTCTACTATGGATACCTTGGTCCCTCCCACATAGCAGCATGCagtgagtaccagtacagagatgGTCAGAGGACAGGATGTCACCTGAGAGGATCCTTCCTTCAATATGACGTCTACTTCAAGGTCAATGGGACTCTCGATGGCTTATCTGTACAGAATAACTTCCTGGTGCTTCCTAGATATCATGTCAAGCCCCCGGCCCCTAAGGTGAAGATCACAGAGGAAGGTAGGAATCTCATCCTGAGCTGGGACCCTCCGGACATAGGCGCTGTCCACTGCTGGAATTTCATCTTAAAATACAACAAGTGTCAAGAGTCTCTGGGTAAGGAAATACAATTGGAACGTGTACCAGGGAAGGTTTCATATGACCAGAGATGCCAGTACAGAGTCAAGCTTAAAGCAGTCTATACGAAATGGTGTGGGGAGGGAGGCAGCGACTGGAGCGAAGAGGAAATCTATGGCACAGAAATAAGTTTATCCCCAAGATTCCCCCGAGGACCCTAACTGCACTGCTTAAGAGTGTCCGGAGTGGGAGCTCTGCAATCGATCATAGATCAGCACTCCAACTCTGAAACCACTCATGACTGCAAtttttcctctctctatacctctctttcctttcttctGTGCTGCTCAAGCAGCTCTGGATTTCTGTGCTTCTCCACCCTAGCTTTTGATGCAGCCTTCTTTCTTTTCTTATCTGCCAAGACGTTTATCTGCCAAGATAACAAGAAGTTTAGATTAATCAGATTGTTCTAGATTATTGCACATCCACTAAAGGGGCATTACACTCAAAAAATGTAAAGTTTGGCACATGTTTGCACATCTCAAAAGTAGTCTTATGTCTCAAAAGTAGACTTAAAAGGGATAAATCACCGAAATTACAAACGTACATTGgattccttaccctgtaagcagtcaatggacaaggcaagacagcagtccatgctttggtttaTAGCACAAAACCACTGCAAGTGGATATCCCCGATTTTTTTTATAAGCATATTTCACATTccatgtccaaatcatcccagTGCCAAAAATTGATTGTCTAGCTCAATAAAGTTAGTTtaagatgatttggacatgaaatGTGAAATATGCTAATATCACAGATATTCAGTTAAATTGGTTTTGTGCTATCAATGTTAAAAAGATGGAGACCGTGACCAGGTAAACAAAACCCAAGCAAGGATTGCTGTGTTCTCTTGTtaatagactgcttacagggtaaggaagcAAGCAGAATACTACCCTGtaccccactgctggcttgcccctgaaactaagcagggttggtcctgatcGGTCTCTGGAGACCAGATACTGTTGGAAGTGGTGTCGGAGGGCCAGTAGGATGCACTCTTTCCTCttgtctaaaaatatatatatatatcccaatgCCCtggggcagtgattggggacattgctttgtgtagattgctgtctttcagatgggatgttagatgggtgtcctgactctctgtgatcact
>XM_021578007.2
CTTCCCACTTTGAAATAAGGAAACCAGACTTTCTCGTGCTGCCGAAGTccggggtgtattcattagtcagaATTTCCGACTAAAAACGTGAGTTTctaacgttttgcaacagaaaccgTTAGAAACTCACATTTTTCGTTTGGAGTTATTGGGCAAATTCAAGTAGTTCCCTCCCAATGCACGACCTGTGCGTTGGCATCGCCCTGGGTGTTCATCGACTTCAAGGGCATCCTGCTGTATGGCAACCCTGCCCAGAAAGAGAAGTACCTGCCCAAACTAGGCACAGCTCTCCCTGAGCCGCTCAACCTGTCATTGACGTGGGAGTCTGAATTCCGTATAAAGCTGTCGTGGAACGCACCAAATAATTTAAATGCATCATGCAAGGTGAACTACATGATCACTACAACGATCGGAGAGAGGAGACCCAAAGTAGAGACAACTTTGAAGTTGTATAAAGAGTATAGACTCTCTACGGAAGATGCAGTGAATTACACAGTGCAAACAAACCCCAAACACTGTACAGGTAGAACCATAAGCAAACCTGTCAGCAAATCCATCACTAAACCCACAGAGTTGGTGAAGAACTTCCAGTGTTCCCTCTACTCCTCTAAGGCCATGAACTGCAGCTGGCTTCCAGTCAATCAGGCCTCAGACCTCCAGCTCTACTATGGATACCTTGGTCCCTCCCACATAGCAGCATGCagtgagtaccagtacagagatgGTCAGAGGACAGGATGTCACCTGAGAGGATCCTTCCTTCAATATGACGTCTACTTCAAGGTCAATGGGACTCTCGATGGCTTATCTGTACAGAATAACTTCCTGGTGCTTCCTAGATATCATGTCAAGCCCCCGGCCCCTAAGGTGAAGATCACAGAGGAAGGTAGGAATCTCATCCTGAGCTGGGACCCTCCGGACATAGGCGCTGTCCACTGCTGGAATTTCATCTTAAAATACAACAAGTGTCAAGAGTCTCTGGGTAAGGAAATACAATTGGAACGTGTACCAGGGAAGGTTTCATATGACCAGAGATGCCAGTACAGAGTCAAGCTTAAAGCAGTCTATACGAAATGGTGTGGGGAGGGAGGCAGCGACTGGAGCGAAGAGGAAATCTATGGCACAGAAATAAGTTTATCCCCAAGATTCCCCCGAGGACCCTAACTGCACTGCTTAAGAGTGTCCGGAGTGGGAGCTCTGCAATCGATCATAGATCAGCACTCCAACTCTGAAACCACTCATGACTGCAAtttttcctctctctatacctctctttcctttcttctGTGCTGCTCAAGCAGCTCTGGATTTCTGTGCTTCTCCACCCTAGCTTTTGATGCAGCCTTCTTTCTTTTCTTATCTGCCAAGACGTTTATCTGCCAAGATAACAAGAAGTTTAGATTAATCAGATTGTTCTAGATTATTGCACATCCACTAAAGGGGCATTACACTCAAAAAATGTAAAGTTTGGCACATGTTTGCACATCTCAAAAGTAGTCTTATGTCTCAAAAGTAGACTTAAAAGGGATAAATCACCGAAATTACAAACGTACATTGgattccttaccctgtaagcagtcaatggacaaggcaagacagcagtccatgctttggtttaTAGCACAAAACCACTGCAAGTGGATATCCCCGATTTTTTTTATAAGCATATTTCACATTccatgtccaaatcatcccagTGCCAAAAATTGATTGTCTAGCTCAATAAAGTTAGTTtaagatgatttggacatgaaatGTGAAATATGCTAATATCACAGATATTCAGTTAAATTGGTTTTGTGCTATCAATGTTAAAAAGATGGAGACCGTGACCAGGTAAACAAAACCCAAGCAAGGATTGCTGTGTTCTCTTGTtaatagactgcttacagggtaaggaagcAAGCAGAATACTACCCTGtaccccactgctggcttgcccctgaaactaagcagggttggtcctgatcGGTCTCTGGAGACCAGATACTGTTGGAAGTGGTGTCGGAGGGCCAGTAGGATGCACTCTTTCCTCttgtctaaaaatatatatatatatcccaatgCCCtggggcagtgattggggacattgctttgtgtagattgctgtctttcagatgggatgttagatgggtgtcctgactctctgtgatcact

Function

NR:

description
interleukin-13 receptor subunit alpha-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578006.2 False 2778 mRNA 0.43 8 45966751 45977150
XM_021578007.2 True 2157 mRNA 0.45 8 45966751 45981315

Neighbor

gene id symbol gene type direction distance location
LOC110500587 LOC106608771 coding downstream 26712 45928815 ~ 45940039 (-)
LOC110500586 LOC106608770 coding downstream 41153 45893338 ~ 45925598 (-)
LOC110500582 LOC106577643 coding downstream 129793 45815066 ~ 45836958 (-)
LOC110500942 NA coding downstream 153461 45809435 ~ 45813290 (-)
LOC118942790 NA coding downstream 158202 45803702 ~ 45808549 (-)
LOC110500590 LOC106608773 coding upstream 133 45981448 ~ 46003506 (-)
LOC110500875 LOC106608799 coding upstream 22241 46003556 ~ 46004815 (-)
LOC118942937 NA coding upstream 30120 46011435 ~ 46017296 (-)
LOC110500592 LOC106608778 coding upstream 60922 46042237 ~ 46125028 (-)
LOC110500593 LOC106608781 coding upstream 144553 46125868 ~ 46148796 (-)
G1743414 NA non-coding downstream 222186 45744140 ~ 45744565 (-)
G1743413 LOC106584613 non-coding downstream 226191 45740058 ~ 45740560 (-)
LOC110500575 NA non-coding downstream 226939 45735907 ~ 45739812 (-)
G1743409 NA non-coding downstream 229842 45736680 ~ 45736909 (-)
LOC110500574 LOC106608762 non-coding downstream 261493 45703162 ~ 45734292 (-)
G1743608 NA non-coding upstream 117103 46098418 ~ 46099413 (-)
G1743695 NA non-coding upstream 187772 46169087 ~ 46171732 (-)
G1743705 NA non-coding upstream 194888 46176203 ~ 46176412 (-)
G1743710 NA non-coding upstream 199975 46181290 ~ 46181496 (-)
G1743429 LOC105030512 other downstream 194320 45770822 ~ 45772431 (-)
G1742845 dock11 other downstream 672012 45287791 ~ 45294739 (-)
G1742473 LOC106608730 other downstream 1098108 44864416 ~ 44868643 (-)
G1743697 NA other upstream 190652 46171967 ~ 46173734 (-)
G1746833 LOC106608613 other upstream 2427176 48408491 ~ 48410753 (-)
LOC110500878 LOC102779023 other upstream 3439163 49392218 ~ 49424330 (-)
G1747906 LOC106608620 other upstream 3478373 49459688 ~ 49585178 (-)
LOC110500619 LOC106608618 other upstream 3518176 49493629 ~ 49502064 (-)

Expression


Co-expression Network