LOC110500595 (LOC106608779)


Basic Information

Item Value
gene id LOC110500595
gene name LOC106608779
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 46151441 ~ 46172393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578013.2
CTTTTGAACAACTTCCCTACCACCACAACACTGCAAGAACTGTCTTTTTTGCTGTTAGGTTAGTGCATTGGCACTTGCATACCCGGAAATAGTGTGAGGGGGAGGACCAAGGCATCAAGCGAGAGAGATCGAGATATTATTTTCGTTAGTGTGCCAGTCTAGTCATCCCAGGGTCCTCGAGGGAAATGCTGTATGTTAACAATTATTTTATTGAAGTTGGATTTTTTTACGGTGAAAGAATCTAAACTGTCGAGAAAcagtttttttcttcattttcctGACTCAAGCGCGCACGAGAGCAAGAGCGAAGTGGAACAGCTGACCTATAATAAATTCATCGATTGCAGTTATTTGGTTACTAAGTTATTCTAATCAATACGTAATAACCTGTTGTTCCAAGAAGAGAGAGGCGCGATTCACTGATACCTAATGTCATGATTTAATGTCGAGAAGAATAGAATTCAAGACAACACAAGTTATTTATTGAAAAACCTAAAAACAATGCAATATACGTTCAATATGTAAAAATTATATTTGGAGTATTGCTTGTTGGGGGACAACGTCGCCAAAAGGAGCTAATCTATTTTCTCAAGCACCCTCTCCCATGTCACATTCAACATCAATAGAAATAGTTGCGGTTGTGTTATTGTTGTAATTTGTGTCAAAACCGAAGGATGACTGTCAAACTGGATTTTGAAGAGTGTCTCAAAGACTCCCCCCGATTCAGGGCCGCCATTGAAGTGGTGGAAGGAGATGTCTGTGAATTGGAAACGCGATTAGAGAAGctGGTGAAGCAGTGCCACTCCATGCTAGAGGCTGGCAGGGCCTACTGTCAGACCAGCAAGAGCTTTGTCACAGGGCTCAAAGAGCTGGGCCACCACTGTTCTGGGGACAACATGATGGGGGAGTGTTTGGAGAAATTCTCCAAGAAGCTGGCAGTGATTCTGGAAGCTCAGGGGGAAGTGATTGAAAGCACACAGAAGTCGGTGAAGTTGAAGTTGCTGAGTTTTGTGAAAGAGGACGTGCGTCGGTTCAAGGATGTGCGTAAGGAGTTTGAGCGGGGTAGTGAGAGTCTGGAGGCAGCATTGGGGAGGAACGCTCAGGCCCCCCGGGGAAAACAGCACGAGGTAGAAGAGgtcagccatgccctcctcaacGCCCGCAAGACCTTCCGCTCCGGAGCCCTCGACTACGTACTGCAGATCAATGTCATCGAGGCCAAGAAGAAGACCGACATCCTGATGGCGATGGTGTCTATGATGGATGCCCAGTCCCAGTTCTTCCAGCAAGGTCACCAGTCCCTCTCGGAGCTGGACGACTACCGCCGCACCCTGAGTGAAGAGCACACTCAACTAGTGTTGAATTCCgccagggagaagagagacatgGAACAGAGACACGAGGCCATTAAGAAAAAGGATGTGTCCTATGATAACTCCTTAATGGATTTCTGTGCTGATGCCGCCAACGGTATCGCCATGGAGGGCTACCTGTATAAGAGAGCTAGCAATGCCTTCAAGACTTGGAGCAGGCGCTGGTTCTCCATTCAGAAAAATCAACTGGTCTATCAGAAGAAATTCAAGGATCAGCCCACAGTAGTGATTGAGGATCTGCGTCTTTGTACAGTGAAGGTCTGCGTTGACAATGAGAGACGATTCTGCTTCGAGGTGGTCTCTCCATCCAAgagctgtCTGTTACAGGCAGACTCCGAGCGCCAGCAGCAGGGCTGGATCAGTGCTGTCCAGAACAGCATTGCTTCAGCCTTCCAGGAACGCAGAGAAGACCCGCACTGTCCCAGGGAGCATTGCAGCTCTGTGTCGGGAGGCAGCCCAGGAGGAGGATGGCTGTGTGGGGAGCAGGAGAAGACGGGGGGCCGCGAGGCTCTGGAGGAGGTTCAGGCCATCCCGGGGAACATGCAGTGCTGCGACTGTGGAGAGCCCGGTCCAGACTGGGCCTCTATCAACCTGGGGATCACCCTCTGCATCGTCTGCTCGGggatacacagGAGTCTGGGTGTCCATTTCTCCAAAGTACGCTCCCTCACCCTGGACTCCTGGGAACCAGAGCTGGTCCGGTTGATGTGTGAGTTGGGAAACACAGCCATCAACAGGATCTACGAGGGGCGAATTGATGAGATCACCATCAAGAAACCCCACCCGTCCAGTCCAAGGGGTGATAAGGAGTCGTGGATTCGTTCTAAGTACGTGGAGAAGAAGTTCATCCAGAAGCTCCCGGAGACAGGACGTAAAGCTCCCCTGCGGCGCTCCAGCGCCCGGAGGAACAGGGCTAACACCCAGGAGAGGCCAGCTGGGTCACGACCCCCACTCAAACCCAAACCCACCCGGGCCACCCTGCCACGACTCGCAGggCTCAATCAGAGTGACCTTGTCCAAGAGAACAACACGGCCATTCAcaaagATGATGAAGATGACGAAGAGGAGGACCTGTCTGGTCTTCATCCCGGGGCGTTGTTGTATCGGTCTGCAGCGCTACAGCATTTCCCTGTCATGGCCGACGCCCTGGCCCACGGAGCTGACGTCAACTGGGTCAACACAGCCGAGGAGTCCAGCACCCCACTCCTACAggccgtcaccgcaAACTCCTTGGCAGCGTGTGAGTTCCTGCTACAGAACGGTGCCAATGTCAACACAGCAGACAGCAACAGGAGAGGACCTCTACACCACGCCACTATACTGGGACACACTGGGCTTGTGTGTCTGTTCCTGAAGCGAGGGGCGGACTACAACGCCAGAGACAACAACCAGAAAGACCCCATTACTATCGCCGTGGAGACAGCCAACGCTGACATTGTCACCCTGCTGCGAATTGCCAAGATGAACAAGGAGATGcgggagatggatggagccttTGGCCAATCAGGTGATGAAACGTACCAGGACATCTTCAGGGACTTCTCTCACATGGCTTCTAACAACCCGGAGAAACTCAAACGCCGCAGCACAGACTTTAAAACTTGACCTTACTCAACAGCTGTTTCTTTTGTATGCTGTTGTTATGCTGTTTTcctttcttttttgttgttgtcacacacacgcgcgccgacacagacaaacacacacacacacatttgctggCCACCTGCTCTGCGTTAGGTCATTGCTCAGCTGGTGATTACTTTAGTAGCGGCTCCGGTCCAACAGTAATGCCTTTGTGTTTGGCTGCCAGAGGAGAACACTCAGGCTTAGTGGCTACATGAGACACTTGTTGAAGGAGATAGAAGATGTACAGCCTAATAATGACGGCTGATACAGTAATAACCTCCCATTGAATGACTTATTTCCTCATTTCATTTGGCTAACCATAGTCTAGCGGAGCCATCCGACACAATTCTGGTCTCGTTGACTCGACTGTAAGGCTCGGTTTCCCACAACTACCGTTGAACAAAAAAATGCAACTTTAATAGCTGTGTTGCTTTCTGTCAATCCTCCTCAATGTACTGTTGTGACAGAAAGAAAAGGAGGGATATGTTTGAAGCAAAGGGTAAAACTGTTGTATGTGCTCTTGTACTTGTCTTCATATTTTTGGATGTGATGTTGTTTCTTTGtatatcatgtttttttttgggggggggggggggggtctattgaCTGCGTGAGGTACAAGAGATGTGTTTCTTGCGGAAAATTAAAATACCAGAGTTAATTTCCGTTTCTGTGTAAAGTCATTCAGTGGACCTAGATATGCTGGGTGTGTTTAAGCGGTAAGTCGAGCGAAGTCGACTGTAGACGAAAATAGCGAGTGAAGTGGGGGGGTGGGGTGTATCTGCGACAGCCAAAAGCAAGGCTCATTTCAACATGGCAATGTCAACAAAGCTGCTATATAAAAGGTTTTCTTTATAAATGTCTAAAAAAAACTTTTCTATACCcccatatcacacactcacaaagtGAAAACGTATGTACAATTAATTGGTTAATAGAGAAAGGTCTCAAATATTCCTTTCATTTGTGTCCCCTGCAGCTTGACAATTGAGGCAGTTGGTTCCTGTTTAAGTCACGTCTTCGGCCATGTTTGCATGGGTATAAGTACAAATGTGattcatttgtttattttttcaaGCCTAAGTGGACAACTACTTTTTGTGTTAACTGTTTTGTGTACCAGTCCTAAAATGTCTTTGACTGGATATAATTGCCTGTACATTGTGTTGCGGTAAACGGGGTTCATTTTACCCAGGACCACCTATAGTTTCCAAA
>TU1996756
GTTTTGATTGCTTTCTGGAATCATTGCTGGACCCTTACTAGAGTGCTGTCAGAAGAAATCTGGACAAATAAGAGGTTAGGGGGAACGTTCTTGTAACTTATATGGGGAACGTTCCTGGAACTGAGAGTTGTTAACTGGATTACTGGGTAGGGACCATTTGCTGTATCTCCAAAGAGGGAGTAGAGTGAATGCAGTTTGAGTAGAGGGATAACTCGAATACAGGGTAAATGTATGGACAAGAGGCTTCTATACTGTAGTATTTCTGTATGTTGGAAGAGGCAACCATTTTGGGAATATAATACTAAAGGGAAAAACTGGGAAAAGGAGAGAACATTCCATAGAAGAGGAAGGAGGGACGTTTAAAGGGAGTGTTTATGTATGCACACCACGAGAGAGTCCACGTTGCACTTTGATGTAGAATGAATGAATGCCGTTAGTCATCCTGCACTTTACAGCCCATATAAGCTCAATGCAGATCAGTGTATGATAGCACTGGGCATTGGCCATGTTTAACATGTATTTATACACCTATATATAAGTGTAGAGTTCTATATGGACTTATGTGTGAATGTATTGTATGATACCACAGGATGCTGCTTGAAAAAGAATGAATCTGATTGTTAGTGTTGTCTCATCGTGTACATTTTATGCACCTTGCATAAGTCCAACAACCAATGGTATTTTCACTTGAGGGTTTTTCCATTATACAACTGTATGTTCCCCCAGGCTTGTTTTAACCTTTTCAAACGGGCTCTGTGGTCACACCTAAGTGGTTACTATTGTGTTTGACCGGTTTCAAATGCACACTGCCACCGTTTAAGCGTGGCTGTTGTTTGAGAATTAGAACTTGGTGCTGAGAACATGAAGATGTATAGAAAGTAATGAGCCACTCTGTCCATTGTAGTTCAGTGTTTTCCCAAACAGTGGCTCAGGGCCCACTGGTGGGTTATTGTTGTGGCCAGTCTTAGGCTGCTGGTCAAGCCTGGGTCGTGGCTGTTATAATCATGTTTGTGTCTATCTGGACAATGAACAATGCACCATGATTAAacatttgggaaccactggtctgaGCCCATCAGCTAGCCAGTAGGCCTAGCTGATGCAACCAATTTGGGCTGGAACAGTGGACTCTCAATGGGTAGAGCTGTAACATTTTTTGCGGTGTTGTATGCGAAAGAGGGTGGACCATCCATTCCTCCATAGCCAAACTGTCTGCCAAGTTTGTTCCAAGTTATTTACTCCAGTACTGTCACAATAACTCCCTATTTCAAATCCCGGTTTAAAGTATCCTAACTCAAATCATTTGTCTGGCTCTGGAGGACTGAGGTTGTGAGGCTCATGTAATGTCTATACTCGGAAATGCTTCATTTGTCTTGTCAGTCTCTGATGTGCAGTGCTTTCTCGTTGTTGTTTTGTGAGCCTTTGTGTTCGTCCAATGAGGCGACTGCCTGCTCTGCGCTGCTTGCACAGTGTGTCCCTTGATGCCACCTCCTTACAGCGCTACAGGTGATGAAACGTACCAGGACATCTTCAGGGACTTCTCTCACATGGCTTCTAACAACCCGGAGAAACTCAAACGCCGCAGCACAGACTTTAAAACTTGACCTTACTCAACAGCTGTTTCTTTTGTATGCTGTTGTTATGCTGTTTTcctttcttttttgttgttgtcacacacacgcgcgccgacacagacaaacacacacacacacatttgctggCCACCTGCTCTGCGTTAGGTCATTGCTCAGCTGGTGATTACTTTAGTAGCGGCTCCGGTCCAACAGTAATGCCTTTGTGTTTGGCTGCCAGAGGAGAACACTCAGGCTTAGTGGCTACATGAGACACTTGTTGAAGGAGATAGAAGATGTACAGCCTAATAATGACGGCTGATACAGTAATAACCTCCCATTGAATGACTTATTTCCTCATTTCATTTGGCTAACCATAGTCTAGCGGAGCCATCCGACACAATTCTGGTCTCGTTGACTCGACTGTAAGGCTCGGTTTCCCACAACTACCGTTGAACAAAAAAATGCAACTTTAATAGCTGTGTTGCTTTCTGTCAATCCTCCTCAATGTACTGTTGTGACAGAAAGAAAAGGAGGGATATGTTTGAAGCAAAGGGTAAAACTGTTGTATGTGCTCTTGTACTTGTCTTCATATTTTTGGATGTGATGTTGTTTCTTTGtatatcatgtttttttttgggggg

Function

NR:

description
PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2-like

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578013.2 False 4217 mRNA 0.49 23 46151441 46172393
TU1996756 True 2215 lncRNA 0.43 2 46169419 46171765

Neighbor

gene id symbol gene type direction distance location
LOC110500591 LOC106608776 coding upstream 130874 46016422 ~ 46020567 (+)
LOC110500588 LOC106608772 coding upstream 206571 45942157 ~ 45944870 (+)
LOC110500584 LOC106608769 coding upstream 262784 45869887 ~ 45888657 (+)
cnpy4 cnpy4 coding upstream 301434 45848186 ~ 45850007 (+)
LOC110500577 lsmd1 coding upstream 396073 45744610 ~ 45755368 (+)
LOC110500598 LOC106608783 coding downstream 29438 46201831 ~ 46210557 (+)
LOC110500597 LOC106608784 coding downstream 44224 46216617 ~ 46266922 (+)
LOC118936379 LOC106608786 coding downstream 46156 46218549 ~ 46222191 (+)
LOC110500876 LOC106577625 coding downstream 861709 47034102 ~ 47113062 (+)
LOC110500605 LOC106608606 coding downstream 1196271 47368664 ~ 47958017 (+)
G1743171 NA non-coding upstream 183658 45922506 ~ 45967783 (+)
G1743202 NA non-coding upstream 221319 45928826 ~ 45930122 (+)
G1743166 NA non-coding upstream 223112 45891897 ~ 45928329 (+)
G1743112 NA non-coding upstream 357615 45785850 ~ 45793826 (+)
G1743648 NA non-coding downstream 10907 46183300 ~ 46183714 (+)
G1743654 NA non-coding downstream 18822 46191215 ~ 46192309 (+)
G1743660 NA non-coding downstream 26106 46198499 ~ 46198707 (+)
G1743799 NA non-coding downstream 132023 46304416 ~ 46304977 (+)
G1743077 NA other upstream 441491 45707142 ~ 45709950 (+)
G1743043 NA other upstream 511699 45639296 ~ 45639742 (+)
si:dkey-38p12.3 LOC106608755 other upstream 595852 45544516 ~ 45565742 (+)
LOC110500870 LOC106608752 other upstream 657489 45485247 ~ 45517233 (+)
fcer1g LOC106608748 other upstream 702754 45444361 ~ 45449712 (+)
G1744645 NA other downstream 991511 47163904 ~ 47236823 (+)
G1746210 NA other downstream 1922374 48094767 ~ 48095119 (+)
G1746471 LOC106608612 other downstream 2152707 48325100 ~ 48363926 (+)
G1747255 NA other downstream 2804933 48977326 ~ 48977758 (+)
G1747814 LOC106606817 other downstream 3273446 49445839 ~ 49446626 (+)

Expression


Co-expression Network