LOC110500608 (LOC106608690)


Basic Information

Item Value
gene id LOC110500608
gene name LOC106608690
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 48326396 ~ 48337043 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578058.2
CCCCCCTCCTTCCCACTCACCCCCGTTAAGGCTTCAGCACAGGGGAGTGCAAGGAGCCGCACAGGTCACCCCACCCAGTCTGACCTCCTCGGCCCACGTCTTCCTAGCTTCCGTAAGGATACAGGCACATGTTGAGACGCCCCTAAAGGGACCTACACACAGGGGCAGCGATGTCGCAGTTCTCTACCATGACGACCAACGAGAGGAAGATGCAAGCTGCAGCCATCTGTAGGGAGGTACAGGGTCCTGAAGATGCAGAGATGGACCTGGGGAAGAAGATGAGTGTCCCTAAGGATGTGATGCTGGAGGAGCTGTCTCTGGCCTCCAACAGGGGCTCCCTCCTCTTTGAAAAGCACAAGAGGCGCTCTGAAAAATACACATTCGAGAGCATCCAGAATGTAACCAACACACAGATCAATAGTCAAGAAACCACAGAAAGCAACAGCTTGGGAGTGGAACAGTCTAAAACAACCCCGAACACGCCTGATCCGAGCAACACCCCCAACCCAGACAACATTGCACCAGGTTATGGTGGACCTCTAAAACAAATGGAACCAGAGAAGTTCAACAGCACATGCCTCCCCAAGTCCTACCACTCCCCCTGGGACCAGGCCATCTACCACAGCGACCCCTCCCTGGCCGATAGCCTTGTCAACCACCTGCCAGAGCCAGAGGCCAAGCCTGAAGGACCAGGGTACAAGAGCTTCAACAGAGTGGCTACCCCGTTTGGCGGCTTCGGCGGCAAGTCCACCATACCGGCCCCGTTGTTCAAGGCCCCCGACGTGGAACACAACACCATGCCGGAGCTGTACCCAGAGCTCCAGGGGGAGCCTGCGGTGCAGAGGCCCACATTCAATAGGGTGGCCTGCGGCTGGGCGGGGGCCAGCACCCCCGTCATCCTCCCCAAAATGCACCTGGATCCCATGTTTATCCCAGAGTCCGATGACCTTTGAACTTCTGGCGGATGCTCAATCTTCTGAGATGCTGCTTGGTTTGCTACCAAAAAGTCCTTCCGCTGGGTTTAGGGTCAGAATAGGGtcagagtgagggaaggaggcaTTTTTGATTGCCTGATTAGGGCAAGTTAGCTACTTTTTTGTGGCGAAAAATGCAAGTTTCTCTGATTAACTGATCTGCCCATGCCCAAGGTGTTCTGCCTATCTCCAAACTGCACTTGAAGTAAGTAAACCAGCTAGTTTACACTAGCTAGAGTTACTAAATACAGTATAGGATATTTACACACTGCACATTGATGTGTATAAGATATAATGAATCTGCCTGATGACATTTGATTACTGTATTAGTTGTTTTTGAGCTAAATAAAATGATGTAAAGCACAATGTTATAATTTCA
>XM_021578059.2
CCCCCCTCCTTCCCACTCACCCCCGTTAAGGCTTCAGCACAGGGGAGTGCAAGGAGCCGCACAGGTCACCCCACCCAGTCTGACCTCCTCGGCCCACGTCTTCCTAGCTTCCGTAAGGATACAGGCACATGTTGAGACGCCCCTAAAGGGACCTACACACAGGACACTTGATGGGCAGCGATGTCGCAGTTCTCTACCATGACGACCAACGAGAGGAAGATGCAAGCTGCAGCCATCTGTAGGGAGGTACAGGGTCCTGAAGATGCAGAGATGGACCTGGGGAAGAAGATGAGTGTCCCTAAGGATGTGATGCTGGAGGAGCTGTCTCTGGCCTCCAACAGGGGCTCCCTCCTCTTTGAAAAGCACAAGAGGCGCTCTGAAAAATACACATTCGAGAGCATCCAGAATGTAACCAACACACAGATCAATAGTCAAGAAACCACAGAAAGCAACAGCTTGGGAGTGGAACAGTCTAAAACAACCCCGAACACGCCTGATCCGAGCAACACCCCCAACCCAGACAACATTGCACCAGGTTATGGTGGACCTCTAAAACAAATGGAACCAGAGAAGTTCAACAGCACATGCCTCCCCAAGTCCTACCACTCCCCCTGGGACCAGGCCATCTACCACAGCGACCCCTCCCTGGCCGATAGCCTTGTCAACCACCTGCCAGAGCCAGAGGCCAAGCCTGAAGGACCAGGGTACAAGAGCTTCAACAGAGTGGCTACCCCGTTTGGCGGCTTCGGCGGCAAGTCCACCATACCGGCCCCGTTGTTCAAGGCCCCCGACGTGGAACACAACACCATGCCGGAGCTGTACCCAGAGCTCCAGGGGGAGCCTGCGGTGCAGAGGCCCACATTCAATAGGGTGGCCTGCGGCTGGGCGGGGGCCAGCACCCCCGTCATCCTCCCCAAAATGCACCTGGATCCCATGTTTATCCCAGAGTCCGATGACCTTTGAACTTCTGGCGGATGCTCAATCTTCTGAGATGCTGCTTGGTTTGCTACCAAAAAGTCCTTCCGCTGGGTTTAGGGTCAGAATAGGGtcagagtgagggaaggaggcaTTTTTGATTGCCTGATTAGGGCAAGTTAGCTACTTTTTTGTGGCGAAAAATGCAAGTTTCTCTGATTAACTGATCTGCCCATGCCCAAGGTGTTCTGCCTATCTCCAAACTGCACTTGAAGTAAGTAAACCAGCTAGTTTACACTAGCTAGAGTTACTAAATACAGTATAGGATATTTACACACTGCACATTGATGTGTATAAGATATAATGAATCTGCCTGATGACATTTGATTACTGTATTAGTTGTTTTTGAGCTAAATAAAATGATGTAAAGCACAATGTTATAATTTCA
>XM_021578060.2
CCCCCCTCCTTCCCACTCACCCCCGTTAAGGCTTCAGCACAGGGGAGTGCAAGGAGCCGCACAGGTCACCCCACCCAGTCTGACCTCCTCGGCCCACGTCTTCCTAGCTTCCGTAAGGATACAGGCACATGTTGAGACGCCCCTAAAGGGACCTACACACAGGACACTTGATGTAAGGTACACACGTAGGGCAGCGATGTCGCAGTTCTCTACCATGACGACCAACGAGAGGAAGATGCAAGCTGCAGCCATCTGTAGGGAGGTACAGGGTCCTGAAGATGCAGAGATGGACCTGGGGAAGAAGATGAGTGTCCCTAAGGATGTGATGCTGGAGGAGCTGTCTCTGGCCTCCAACAGGGGCTCCCTCCTCTTTGAAAAGCACAAGAGGCGCTCTGAAAAATACACATTCGAGAGCATCCAGAATGTAACCAACACACAGATCAATAGTCAAGAAACCACAGAAAGCAACAGCTTGGGAGTGGAACAGTCTAAAACAACCCCGAACACGCCTGATCCGAGCAACACCCCCAACCCAGACAACATTGCACCAGGTTATGGTGGACCTCTAAAACAAATGGAACCAGAGAAGTTCAACAGCACATGCCTCCCCAAGTCCTACCACTCCCCCTGGGACCAGGCCATCTACCACAGCGACCCCTCCCTGGCCGATAGCCTTGTCAACCACCTGCCAGAGCCAGAGGCCAAGCCTGAAGGACCAGGGTACAAGAGCTTCAACAGAGTGGCTACCCCGTTTGGCGGCTTCGGCGGCAAGTCCACCATACCGGCCCCGTTGTTCAAGGCCCCCGACGTGGAACACAACACCATGCCGGAGCTGTACCCAGAGCTCCAGGGGGAGCCTGCGGTGCAGAGGCCCACATTCAATAGGGTGGCCTGCGGCTGGGCGGGGGCCAGCACCCCCGTCATCCTCCCCAAAATGCACCTGGATCCCATGTTTATCCCAGAGTCCGATGACCTTTGAACTTCTGGCGGATGCTCAATCTTCTGAGATGCTGCTTGGTTTGCTACCAAAAAGTCCTTCCGCTGGGTTTAGGGTCAGAATAGGGtcagagtgagggaaggaggcaTTTTTGATTGCCTGATTAGGGCAAGTTAGCTACTTTTTTGTGGCGAAAAATGCAAGTTTCTCTGATTAACTGATCTGCCCATGCCCAAGGTGTTCTGCCTATCTCCAAACTGCACTTGAAGTAAGTAAACCAGCTAGTTTACACTAGCTAGAGTTACTAAATACAGTATAGGATATTTACACACTGCACATTGATGTGTATAAGATATAATGAATCTGCCTGATGACATTTGATTACTGTATTAGTTGTTTTTGAGCTAAATAAAATGATGTAAAGCACAATGTTATAATTTCA
>XM_036958065.1
CCCCCCTCCTTCCCACTCACCCCCGTTAAGGCTTCAGCACAGGGGAGTGCAAGGAGCCGCACAGGTCACCCCACCCAGTCTGACCTCCTCGGCCCACGTCTTCCTAGCTTCCGTAAGGATACAGGCACATGTTGAGACGCCCCTAAAGGGACCTACACACAGGACACTTGATGTAAGGGGCAGCGATGTCGCAGTTCTCTACCATGACGACCAACGAGAGGAAGATGCAAGCTGCAGCCATCTGTAGGGAGGTACAGGGTCCTGAAGATGCAGAGATGGACCTGGGGAAGAAGATGAGTGTCCCTAAGGATGTGATGCTGGAGGAGCTGTCTCTGGCCTCCAACAGGGGCTCCCTCCTCTTTGAAAAGCACAAGAGGCGCTCTGAAAAATACACATTCGAGAGCATCCAGAATGTAACCAACACACAGATCAATAGTCAAGAAACCACAGAAAGCAACAGCTTGGGAGTGGAACAGTCTAAAACAACCCCGAACACGCCTGATCCGAGCAACACCCCCAACCCAGACAACATTGCACCAGGTTATGGTGGACCTCTAAAACAAATGGAACCAGAGAAGTTCAACAGCACATGCCTCCCCAAGTCCTACCACTCCCCCTGGGACCAGGCCATCTACCACAGCGACCCCTCCCTGGCCGATAGCCTTGTCAACCACCTGCCAGAGCCAGAGGCCAAGCCTGAAGGACCAGGGTACAAGAGCTTCAACAGAGTGGCTACCCCGTTTGGCGGCTTCGGCGGCAAGTCCACCATACCGGCCCCGTTGTTCAAGGCCCCCGACGTGGAACACAACACCATGCCGGAGCTGTACCCAGAGCTCCAGGGGGAGCCTGCGGTGCAGAGGCCCACATTCAATAGGGTGGCCTGCGGCTGGGCGGGGGCCAGCACCCCCGTCATCCTCCCCAAAATGCACCTGGATCCCATGTTTATCCCAGAGTCCGATGACCTTTGAACTTCTGGCGGATGCTCAATCTTCTGAGATGCTGCTTGGTTTGCTACCAAAAAGTCCTTCCGCTGGGTTTAGGGTCAGAATAGGGtcagagtgagggaaggaggcaTTTTTGATTGCCTGATTAGGGCAAGTTAGCTACTTTTTTGTGGCGAAAAATGCAAGTTTCTCTGATTAACTGATCTGCCCATGCCCAAGGTGTTCTGCCTATCTCCAAACTGCACTTGAAGTAAGTAAACCAGCTAGTTTACACTAGCTAGAGTTACTAAATACAGTATAGGATATTTACACACTGCACATTGATGTGTATAAGATATAATGAATCTGCCTGATGACATTTGATTACTGTATTAGTTGTTTTTGAGCTAAATAAAATGATGTAAAGCACAATGTTATAATTTCA

Function

NR:

description
myozenin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578058.2 False 1353 mRNA 0.52 6 48326396 48337043
XM_021578059.2 False 1363 mRNA 0.52 7 48326396 48337043
XM_021578060.2 False 1379 mRNA 0.52 7 48326396 48337043
XM_036958065.1 True 1368 mRNA 0.52 7 48326396 48337043

Neighbor

gene id symbol gene type direction distance location
LOC110500607 LOC106608611 coding downstream 18023 48255526 ~ 48308373 (-)
LOC110500604 tyrp-1b coding downstream 1156455 47163900 ~ 47169941 (-)
LOC110500603 ci150 coding downstream 1163197 47158123 ~ 47163199 (-)
LOC110500600 NA coding downstream 1295841 46717287 ~ 47030555 (-)
LOC110500599 LOC106608787 coding downstream 1744888 46357709 ~ 46581508 (-)
LOC110500609 LOC106608612 coding upstream 10152 48347195 ~ 48386210 (-)
LOC110500612 LOC106608614 coding upstream 83592 48420635 ~ 48653464 (-)
LOC110500613 LOC106608615 coding upstream 338606 48675649 ~ 48732810 (-)
LOC110500614 LOC106608616 coding upstream 578841 48915559 ~ 48975325 (-)
LOC118936391 NA coding upstream 1046361 49383404 ~ 49391628 (-)
G1746385 NA non-coding downstream 93209 48232945 ~ 48233187 (-)
G1746364 NA non-coding downstream 105084 48220988 ~ 48221312 (-)
G1746359 NA non-coding downstream 109760 48216425 ~ 48216636 (-)
G1746327 NA non-coding downstream 128659 48197375 ~ 48197737 (-)
G1746324 NA non-coding downstream 130950 48195226 ~ 48195446 (-)
G1746821 LOC106608613 non-coding upstream 57423 48394466 ~ 48405161 (-)
G1747005 NA non-coding upstream 320654 48657697 ~ 48658321 (-)
G1747038 NA non-coding upstream 398525 48735568 ~ 48735792 (-)
G1747067 NA non-coding upstream 443291 48780334 ~ 48780543 (-)
G1747083 NA non-coding upstream 456139 48793182 ~ 48793452 (-)
G1743697 NA other downstream 2152662 46171967 ~ 46173734 (-)
LOC110500942 NA other downstream 2513503 45809435 ~ 45813290 (-)
G1743429 LOC105030512 other downstream 2553965 45770822 ~ 45772431 (-)
LOC110500574 LOC106608762 other downstream 2592232 45703162 ~ 45734292 (-)
G1742845 dock11 other downstream 3031657 45287791 ~ 45294739 (-)
G1746833 LOC106608613 other upstream 71448 48408491 ~ 48410753 (-)
LOC110500878 LOC102779023 other upstream 1083435 49392218 ~ 49424330 (-)
G1747906 LOC106608620 other upstream 1122645 49459688 ~ 49585178 (-)
LOC110500619 LOC106608618 other upstream 1162448 49493629 ~ 49502064 (-)
G1747908 LOC106608618 other upstream 1175026 49512069 ~ 49514164 (-)

Expression


Co-expression Network