LOC110500878 (LOC102779023)


Basic Information

Item Value
gene id LOC110500878
gene name LOC102779023
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49392218 ~ 49424330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110500878
TGGTCTGCTGATGTTCATAGGAAATATAACTAGTTAGCTGCAGTAACGGGATATGTGATGCTCCATTATCCGTTacagttgagctatgttagtgtAAAGCCTCAGAAGGAATATTTCAAGTAACCTGTTCTTCGTGATACGTTCTTTGTTCTCGATTCGGAATAAGTGTATCTTATAATTGTCCAGTTGCAGGTGGTTCACCGAAAACCAGAGAATATTCAGAAAGTTATCAAAtccaaatgttattttttttagtCGAGTGAGGAGTTCCCTTGCCATCTTAGCCGCAAGACATCTTGCATTTTCCAACATCTTTGCAGGAACTAATCGTTTCTATTTGACGCGGCCGCAAACACGTGTAGAAGTAGATGACAGCAGGTCACACAGTGCGACCAAAACAATGATCTACACACGTGCAAGAGGCATTTCTCACTCGATACAAAACGTGGATTTAATATCATTCCGAATATTCTCTGGTTTTTGGAGAATCACCTGCAACTGGAGACGGACATTTTATAAGATACACTTTTCTTCCAAATCGAGAACGAAGAAGGTCAGCCAAGAACAAGTGAGACCGTGACAGGGACCGAGACTAGCTGTCGAAGGACAGGGTCTGAGACCAGGACGTCAAGCACTTTGGCATGGCCCTGAACCCAGCTGTCTGCGGCAGCTGTGTGGGCCTTCTCTCCATCAAGCAGACAGCCATACAGCAGCAGATCAACTCGTTCACCAACCTGGCCCACACAACATGCTACTATGAGATCCTGAAGAAGAGTCTGCAGCTGCCCATGTGGGAGTACAAGGAGCAATTCAAACAAGTCCTGGCATGCCACCAGAGCTACATTTTCATCAGAGAAACGGGCTCTGGCAAGACCACACAGaAGGTGAAGTTCTTGGGCGGCCCTAAGAAGGCAGTGACCTGTACCCAGCCCATTAGGGAGGAAGCCATGAGCGTGGCCCAGGGGGTGGCAGACGAGATGCACGTCATGCTGGGCAAGGAGGTGGGTTACTCAATTAGATTTAAGGACTGCAGCTCGGCCAAGACCTTCCTCAAGTACATGACAGACGGTATGTTGCTGCGGGAGGCCGTGAACGACCCCCTGCTGGCGCGCTACGGCGTCATCCTGGACGAGGCCCACGAGAGAACACGGGCCACAGACATCCTCATGGGCGTCCTCAAAGAGGTGGGTCCGGCAGAAGTCCGACCTCAAGACCAAGCCCCAGGTGACTGACTGTGCGCCCAAACGCTGCTGCTCGGCAGCCTTCCATCACCTGCCTGCCCCTTTTGAATGGTTCCGCTTCATCTTTCAGGAAATCGACGACCTGGGACCCGATGTGGGGGACATCAAAATCATCCCGCTGTACTCGACGCTGCTGCCCCAGCATCAGCAGAGGTTCTTTGAGCCGCCCCCACCCACACAAGCCCAACGGAGCTATTGGGAGGAAGGACGTGGTGTCGACAAACATCACAGAGACTTCCCTGACCATCGACGGCGTGGTGTTTGTTATTGATCTCggatttgccccccGCCAGGTGTATAATCCTCATATCGGAGTGGAGTCCCTCCTGGTGACGGCCATCAGCAAAGCATCGGCCCAACACAGAGAAGGCCTACAAGACTGAGATGCAGGACAAAACGTATCCAGATATTTTGAGGTCCAACCTGGATTCGGTCGTGCTGCAGCTCAAGAAGCTAGTTAAGGGTTCCCCTGTAATTGCATTAGTTGTTTTGAATCGGGGGAGCGGAGGATTAAAAATGAGCCTCCCCGCCACGGTTACAAAATTGGCATCCAGGGTAACGGccatcatatacacacacagaggtgCTTTCCTTCTGTTCTTCTTTACCTTCTCTGCCATCCCTTATTCTTCCttgttttctctccaatttcaaaATTTATTCAACTGCTCCATCGAGATCCTGTCCATCACAGCCATGCTGTCAGTCCCACAGTGTTTCGTGTGACCCACGGAGGCTATGAAGGCGGCCGAGAAGTCCAAGATAAGGTTCACCCACATTGATGGAAATCACCTGACCCTCCTCAACGTCTATCACACCTTCAAACAGAACCACGAGTTGGCGCAGTGGTGCTACGACAACTTTGTGAACTACCGGTCGCTGACAAAGTGCACCAGCAGCTGTCCCGGATCATGGACCTCTTCAACCTGCCCCGCCGGATTCTTCATGCAGGTCAGTGCTCACCGGCCAAACAGAGAAAGTGCCCAGAGGgttctgtctcagtatgtgtcaTCATGCTCGACGGTGCCATTATGTTCCCAAACAACACAGCACTTGGTTTTGACCGTTAG
>TU2001151
ATTTGGTCAGCCAGAACATCCCCAAGACATGCAACCACCGACTCCACGGCAGCAGCTGTCCTTTACAGTTTTAGGTGGCACAAATTTTGAATATATCTGGCTCGACAAAACTCACgttaaattgttgtttttctgtCATTTTCGCAGAGATAACAATGATTGAGGTGAGACCGTGACAGGGACCGAGACTAGCTGTCGAAGGACAGGGTCTGAGACCAGGACGTCAAGCACTTTGGCATGGCCCTGAACCCAGCTGTCTGCGGCAGCTGTGTGGGCCTTCTCTCCATCAAGCAGACAGCCATACAGCAGCAGATCAACTCGTTCACCAACCTGGCCCACACAACATGCTACTATGAGATCCTGAAGAAGAGTCTGCAGCTGCCCATGTGGGAGTACAAGGAGCAATTCAAACAAGTCCTGGCATGCCACCAGAGCTACATTTTCATCAGAGAAACGGGCTCTGGCAAGACCACACAGggactcctgagcaaaccaggctgtcatcTTGTGAAACCCAGTGCATGTGAAGaacctagccagctagctagctaaagctagCTAAATGTAATGTACAATTCTGTAATCTTGCCTTGctattaataaaaaaatatttcaaattcAA

Function

NR:

description
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110500878 False 2311 mRNA 0.47 12 49392218 49423525
TU2001151 True 622 TUCP 0.47 3 49420478 49424330

Neighbor

gene id symbol gene type direction distance location
LOC118936391 NA coding downstream 590 49383404 ~ 49391628 (-)
LOC110500614 LOC106608616 coding downstream 416893 48915559 ~ 48975325 (-)
LOC110500613 LOC106608615 coding downstream 659408 48675649 ~ 48732810 (-)
LOC110500612 LOC106608614 coding downstream 738754 48420635 ~ 48653464 (-)
LOC110500609 LOC106608612 coding downstream 1006008 48347195 ~ 48386210 (-)
LOC110500618 LOC106608618 coding upstream 32901 49456426 ~ 49461330 (-)
LOC118942940 LOC106608618 coding upstream 47096 49470621 ~ 49484288 (-)
LOC110500619 LOC106608618 coding upstream 70104 49493629 ~ 49502064 (-)
LOC118942941 LOC106608618 coding upstream 82727 49506252 ~ 49511961 (-)
LOC110500620 LOC106608618 coding upstream 140010 49563535 ~ 49572546 (-)
G1747754 NA non-coding downstream 10867 49381017 ~ 49381351 (-)
G1747707 NA non-coding downstream 53131 49338468 ~ 49339087 (-)
G1747704 NA non-coding downstream 58753 49333242 ~ 49333465 (-)
G1747691 NA non-coding downstream 73811 49318204 ~ 49318407 (-)
G1747687 NA non-coding downstream 85443 49306461 ~ 49306775 (-)
G1747906 LOC106608620 non-coding upstream 140624 49459688 ~ 49585178 (-)
G1747933 NA non-coding upstream 163420 49586945 ~ 49587226 (-)
G1747935 NA non-coding upstream 166536 49590061 ~ 49590331 (-)
G1747938 NA non-coding upstream 181972 49605497 ~ 49605868 (-)
G1746833 LOC106608613 other downstream 981465 48408491 ~ 48410753 (-)
G1743697 NA other downstream 3218484 46171967 ~ 46173734 (-)
LOC110500942 NA other downstream 3579325 45809435 ~ 45813290 (-)
G1743429 LOC105030512 other downstream 3619787 45770822 ~ 45772431 (-)
LOC110500574 LOC106608762 other downstream 3658054 45703162 ~ 45734292 (-)
G1747908 LOC106608618 other upstream 88544 49512069 ~ 49514164 (-)
G1747934 NA other upstream 164171 49587696 ~ 49588788 (-)
LOC110500654 LOC106608650 other upstream 1110480 50534005 ~ 50542563 (-)

Expression


Co-expression Network