LOC110500619 (LOC106608618)


Basic Information

Item Value
gene id LOC110500619
gene name LOC106608618
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49493629 ~ 49502064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958083.1
aaacaggagtgatggttgctgataatgggcctctgtacgcctatCTGCCGCCTGATTTGATCGAGAAGATGGATGGCAGAAAGCCCTACCCTGAGAACATGTTGGGGTTACTACGCTTCATACGCAACCTCCATGAGCACTATGCTGAGGATTTAGAATCTGTTGACCTGATGAAAATGTTCCCTGATCTCTTTGGATGCGTCTACATGTTGGCCAAGAAACAGGACTGGAATTCAAGGCCTGGTCTGAAAAAAATGTGTCCGAGAGATTTAAGCTCATGATTCTGAAATGTAAACTGTATGTCATTTTAAACTGATGAAATATGAACTAATGTCATACTCAAGACTCTTTGTAAGTAGAGCCAGTGATCTGTGTTAAGGACATTTTGTATTCTACATTTTCACTGATAGACCTAATATACATATGATTTTTACAAACCAAGATTACATGGTTGTAGCATATCTATCATGGGGGATTTGAATGTAAAATATAACCTTGTGAAATCTAAGGCTTTTTGTTTACTTGTTTCAGTTTACTTTTTACACAAAGCATTGATATGATAGCAATGACTTGTCAAATGTATTGTTCATGcagtcattttttttaaaggaatctAGTAGGTTTTGTCCAGTGTtgtccacttttttttttttttttccattttaacACAGCTGGTAGACAACAAAATATGCCTCAGTGACACTTCTACTCTAACAACTCAAACATTCATGGTTGTTTTTATTTAGAGGTTTATGGGATTTTGAATAATATGAATTATCTGGATGAGATTTTCTAGAGATGTCTGAATCAAAATGTTTACATACtatcgttttttatttttttatatctgTGTATTGCTTGGTATGGACATGAAGCCCACCAAGTGTGCATTGAAACAACTGTATTGTTCTCTATTCAGTGATTCAATCAAGGAGCTCTGACGCCCTTTTGTGGATAGAACTGAGAATCATCCGTTTTCTATGAATTGAACACCAAAAGAATCCAGCAAGTCTCAATATAATAAAAGGTATAAAATAGCTAAA
>XM_021578088.2
GATTTCAGGAAGAACAGTTAATGGCCGTGTTCGAGGTTAATGGCTAGAAGGgttacagcttttgtcaaatgaGCCTTCTAGCCATGTATGTGTTCAAGAGTCAAAAGCGCAATGTAtaatgggtaaattgtgactgagtGACTTTTTAGTAAATAATAATGAGTCGTTACTTATGATGCAAGATGATGTAGATCAGTCAGTAGACAGTCGCCTGCAGTCGGTTTGATGCTCTCGAACGCGGCCGATGTTTCTTCCGCGTCAGTAGAGCGGGCACTGTAACTTCAGCTTTTCTCCTCTTAGAGACGCCCCTGTGTAGATGACATCGTCAGGAATTATGGAACACAAGATTGATTTTCAAGAACTCCTGACCAAACTGGTTATCTCAGAGCCAACAGATCCTATTATCAAGTGCATTATTAATAATAATCTggagaggctgaagaaattgatTAGAGGCAAGGACATCAATGCATTGTACCCTTGTGTTGAGTTACAAGATGAAGTAACCCCTTTAATTGCTGCTGTTGCATTTGCAAATCAGGAGATTTGTACATTTCTTCTGGGAAAAGGTGCTGACCCCAACAAACCATCAAAAATACTTTTAGCACCACTGCATTATGCTGGACTGCATAAAGTTCCAGTGAATATAGTGACAACATTACTGGAAGCAAAGGCAGATCCAAATGGTCTAGTAGAAACAGGCCTACCTGTAAAACCAAAGTTCTCTCCAATTCAATTAGCacatgacagagaggatgttgtgAAGAAGTTGCTCGAATCTGGAGCTGTAATGTGGCTAAATCATGGCATCCATCCTGCAATTGATCTGAAATTGGCCACAATAATTGAAAACTTTGCTGAAGAGAGTGAGTTATTTTCCAAAATcaagattttttttaattttgtGAAAGCAGTAAAACAAACATCCCCAACAGAAGTGTTCAGCAGCTTTGCCCAGAACCTTCTACAGGTGAACCCCCAAACCCACCTTACTATGGTTGACATGTGCTTTAACATTGAAGGTCCATATGCAGAAAAATACCCCCAGACAGCCATTACATGGTTGAACGACTCCAATAAACTAGATTACTATGTTAAAGATGTAAGCAAACGTCTGTCTACAATTCCTCAGCTTTTTAGGGCAGGTGCATTGAAATCCTTGGATAAAGTTGTTTGCTCCATGAAGGAAATACCTAATGAGGTGTCACTTACCCTAATTCCTGAGTTAGTGAAACTGCTTTCCTGTAAAACAGAAGATTATCTCGTGCCATTGATCATTGTTACGCTCTATGGCATCACACAGAAGACAAAAGACAAGGATCGTTGGAGCAACTCTGACCTTGAGAAAATATGCAAGCACATTGTCCCATGCACACAGAGGGAGGGTTATCCCTCTGAATTGAAGATGTATGCCTATGCGTTGCTAGCAGATCTTTACACATTTAGTTGTGTTCCTGGTTACATCAGCTCTCTGGGACTGACTCCGGTACCTGAAGGACTACTTATCTGGGGACGGGATGAAAACCTGAAAGTAAAGCTGAGAGATTTAAACAAGTCCTTAAACGGACAACATTCTGTCTCCAAGTCAGCAAGTGAAGATTCAAAAGATAGTTATTTATCAGAAaccaacaagaagaagaagaagaagaggggaacGGCAGAAAAACAAGACATACCAAAagaagagacagacacacaagAAAATAAAACCTGTTTAGCCTTCAATACTTCATCTACTCCTGTTGAGGAATCTGGCCTTGATGAGTGTTCTAGTGTCAAGCCGTTCCACCCCACCACTGACACGTCACCATTACAGCGCAAATGGCACAAAGTCAGCAAGCGGTGGGAGACACAGTTAGAGAAGCTTGCCAACATGGATGAAAGTAAAGTTTATAAAGTAGGAAACCTCACTATTGTAGATGATGCAGAATTCTACATAGCAAAGGGGAGTGATGGAACTGAGGTCTTCTTGGGCCTCAGGGATGATGGCACTGAAGTAGCAGTTAAGAGAATGACCAGATTAAACTATCAAGTTCTCAAGAATGAGGAGGAATTCCTACGTCTTCCTAAACTTGATAATCCCTACATTGTAAGATATGTTGACTTTGCCGAGGATACAATCTTTGGCTACCTTGTTCTTCAGCTGTGCGAATACACCTTGGATGAATACATCAAAGACCACTTACCAAAGGACAACCCTCGTGTTCTGAAGGAAATTGTACATGATGTTCTCTCTAGTCTGGGAGTGCTTCACAGTAAAGACACCAACATACTCCACAGGGATATCAAACCCCAGAATGTTTTGATAGATGTTACCGGCAGGGCAAGATTAGCTGATTTTGGTATAAGTCGACAATTGACCACGGGACAAACGACTGTAAAAACAAGAAGTGCTGGAACAAAATGCTGGATGGCCAGGGAAACGTTCGATGAGGACGGCGATATCAGATATAAGCGGAGCACTGATATTCAGGTGGTTGGAATGTTGATATATTACATCCTCTCTGGTGGACACCACCCCTTTGGCAGAGGTCCTCGATGTGAGAGCAACATTCTGGATGGGAACTACAATCTGGATCACGTTGTAGATGAGGTTACAAATGACCTCATTGAGTGGATGATCAACGAAGACCCAAAAAAGAGACCTACTGTGGAGGAGACCTTGGATCACCCCTACTTCTGGGATGAGAAGAGGAAAGTTGAGTACTTGAGAAGAATTGGGAATGAGAAGGAGGTCGGGAAGTATAGTGATGCTGACCCAGAACTTCTAGAAGCTCTGAAACAAAGTGCCATGGAGAGAACCTTCTGCCAGTGGAAATCCAAGCTGCCGCCTGATTTGATCGAGAAGATGGATGGCAGAAAGCCCTACCCTGAGAACATGTTGGGGTTACTACGCTTCATACGCAACCTCCATGAGCACTATGCTGAGGATTTAGAATCTGTTGACCTGATGAAAATGTTCCCTGATCTCTTTGGATGCGTCTACATGTTGGCCAAGAAACAGGACTGGAATTCAAGGCCTGGTCTGAAAAAAATGTGTCCGAGAGATTTAAGCTCATGATTCTGAAATGTAAACTGTATGTCATTTTAAACTGATGAAATATGAACTAATGTCATACTCAAGACTCTTTGTAAGTAGAGCCAGTGATCTGTGTTAAGGACATTTTGTATTCTACATTTTCACTGATAGACCTAATATACATATGATTTTTACAAACCAAGATTACATGGTTGTAGCATATCTATCATGGGGGATTTGAATGTAAAATATAACCTTGTGAAATCTAAGGCTTTTTGTTTACTTGTTTCAGTTTACTTTTTACACAAAGCATTGATATGATAGCAATGACTTGTCAAATGTATTGTTCATGcagtcattttttttaaaggaatctAGTAGGTTTTGTCCAGTGTtgtccacttttttttttttttttccattttaacACAGCTGGTAGACAACAAAATATGCCTCAGTGACACTTCTACTCTAACAACTCAAACATTCATGGTTGTTTTTATTTAGAGGTTTATGGGATTTTGAATAATATGAATTATCTGGATGAGATTTTCTAGAGATGTCTGAATCAAAATGTTTACATACtatcgttttttatttttttatatctgTGTATTGCTTGGTATGGACATGAAGCCCACCAAGTGTGCATTGAAACAACTGTATTGTTCTCTATTCAGTGATTCAATCAAGGAGCTCTGACGCCCTTTTGTGGATAGAACTGAGAATCATCCGTTTTCTATGAATTGAACACCAAAAGAATCCAGCAAGTCTCAATATAATAAAAGGTATAAAATAGCTAAA
>TU2001321
gtGACTTTTTAGTAAATAATAATGAGTCGTTACTTATGATGCAAGATGATGTAGATCAGTCAGTAGACAGTCGCCTGCAGTCGGTTTGATGCTCTCGAACGCGGCCGATGTTTCTTCCGCGTCAGTAGAGCGGGCACTGTAACTTCAGCTTTTCTCCTCTTAGAGACGCCCCTGTGTAGATGACATCGTCAGGAATTATGGAACACAAGATTGATTTTCAAGAACTCCTGACCAAACTGGTTATCTCAGAGCCAACAGATCCTATTATCAAGTGCATTATTAATAATAATCTggagaggctgaagaaattgatTAGAGGCAAGGACATCAATGCATTGTACCCTTGTGTTGAGTTACAAGATGAAGTAACCCCTTTAATTGCTGCTGTTGCATTTGCAAATCAGGAGATTTGTACATTTCTTCTGGGAAAAGGTGCTGACCCCAACAAACCATCAAAAATACTTTTAGCACCACTGCATTATGCTGGACTGCATAAAGTTCCAGTGAATATAGTGACAACATTACTGGAAGCAAAGGCAGATCCAAATGGTCTAGTAGAAACAGGCCTACCTGTAAAACCAAAGTTCTCTCCAATTCAATTAGCacatgacagagaggatgttgtgAAGAAGTTGCTCGAATCTGGAGCTGTAATGTGGCTAAATCATGGCATCCATCCTGCAATTGATCTGAAATTGGCCACAATAATTGAAAACTTTGCTGAAGAGAGTGAGTTATTTTCCAAAATcaagattttttttaattttgtGAAAGCAGTAAAACAAACATCCCCAACAGAAGTGTTCAGCAGCTTTGCCCAGAACCTTCTACAGGTGAACCCCCAAACCCACCTTACTATGGTTGACATGTGCTTTAACATTGAAGGTCCATATGCAGAAAAATACCCCCAGA

Function

NR:

description
uncharacterized protein LOC110500619

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958083.1 False 1043 mRNA 0.35 3 49493629 49495252
XM_021578088.2 False 3823 mRNA 0.40 7 49493629 49502064
TU2001321 True 912 TUCP 0.41 2 49499491 49501927

Neighbor

gene id symbol gene type direction distance location
LOC118942940 LOC106608618 coding downstream 9341 49470621 ~ 49484288 (-)
LOC110500618 LOC106608618 coding downstream 32299 49456426 ~ 49461330 (-)
LOC110500878 LOC102779023 coding downstream 70104 49392218 ~ 49424330 (-)
LOC118936391 NA coding downstream 102001 49383404 ~ 49391628 (-)
LOC110500614 LOC106608616 coding downstream 518304 48915559 ~ 48975325 (-)
LOC118942941 LOC106608618 coding upstream 4188 49506252 ~ 49511961 (-)
LOC110500620 LOC106608618 coding upstream 61471 49563535 ~ 49572546 (-)
LOC110500622 LOC106608618 coding upstream 77612 49579676 ~ 49583327 (-)
LOC110500879 LOC106608620 coding upstream 81388 49583452 ~ 49585199 (-)
LOC110500626 LOC106608623 coding upstream 133955 49636019 ~ 49654484 (-)
G1747754 NA non-coding downstream 112278 49381017 ~ 49381351 (-)
G1747707 NA non-coding downstream 154542 49338468 ~ 49339087 (-)
G1747704 NA non-coding downstream 160164 49333242 ~ 49333465 (-)
G1747691 NA non-coding downstream 175222 49318204 ~ 49318407 (-)
G1747687 NA non-coding downstream 186854 49306461 ~ 49306775 (-)
G1747906 LOC106608620 non-coding upstream 62085 49459688 ~ 49585178 (-)
G1747933 NA non-coding upstream 84881 49586945 ~ 49587226 (-)
G1747935 NA non-coding upstream 87997 49590061 ~ 49590331 (-)
G1747938 NA non-coding upstream 103433 49605497 ~ 49605868 (-)
G1746833 LOC106608613 other downstream 1082876 48408491 ~ 48410753 (-)
G1743697 NA other downstream 3319895 46171967 ~ 46173734 (-)
LOC110500942 NA other downstream 3680736 45809435 ~ 45813290 (-)
G1743429 LOC105030512 other downstream 3721198 45770822 ~ 45772431 (-)
G1747908 LOC106608618 other upstream 10005 49512069 ~ 49514164 (-)
G1747934 NA other upstream 85632 49587696 ~ 49588788 (-)
LOC110500654 LOC106608650 other upstream 1031941 50534005 ~ 50542563 (-)
G1749122 LOC106608652 other upstream 1040371 50542435 ~ 50552525 (-)
LOC110500668 trmt44 other upstream 1534639 51036609 ~ 51051426 (-)

Expression


Co-expression Network