LOC110500635 (LOC106608610)


Basic Information

Item Value
gene id LOC110500635
gene name LOC106608610
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50217151 ~ 50224340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578116.2
TTATAGTAGGCAATACCTCCACTAGGAGCCTGTGGTTGGTTCTCTGGACATCAGGGGGTGAAATAGGAAATCCTGGGGACTTCTATTTCTATTGTTTATTTTCTATCCCATGCCAAATGTAAAATTGCCAGCATACAAGGTGTGCGTAACGCAATGGAAACAATGGACGCGTCCGAGAAGAATCTAACTCACCCAAAGGACACCGATGTGTTAAAAAAGCGCATACCCGATAGCAAGGATACCACTGGGACGGAAGATGAATCGAAGTACGTTGAATTTAACGATTTACTTGATTTGGATACAGACGGCACGAAAACTGTCAACGTTTCTGTCACCAGTGAAGGAAGCCAAATGGCGATTGACGCGGGCAACTGGGAGTCGAGCGCAGAAGAAGAAACTGCTGGATACGGAGACAAGGCGAGTAAGATGACTGATCATATCAACAGTGACACATTTAAGGAGGATATTGTCGCAAAGAAGTGTGCCAAGGGCTATCTATCCGGGTTTCTTGGAACTGCCTGCTGCTCCAAGGTTCCTATTCTGAATGAAAACATTATGGCCAGCACCGAATCACAACGAGCCGTTGGTAATGGAGCGCACACCCGAGATTTTACCCCAAAAGAGGACGCAGAAAATACACCTGTTGATGAACAAAATGACAATGAAGATTTACAATACACTGACATGTTAAGCGAGCAAAGTGAATCGGGTGATGACGTGAGCTTGGTGCTGTTCGGTGATTGTGATGATTGCGCGCCTTGCAGTTGGAAGGATGAGTCTCATTACATAACCTCGCACGAGATCCAGCTCTCCGAGCTTTCAGATCACGATGTCGACTATGATATGGAGCAGGGTTGGGATGATAACCAGGTCTACTCTTTTGTCGATTATGCTGCTTTTGACGGTGATGGAACGacggcagggagagaggagagggtgaaaagcAATCAGGGTCTGGCTAATAGAGGACCAGCAGTCAGCACTAAGATGGAAAGTGATATCGGTGACGGTGACAAGTGCGCCATCTCAGAGAAAGGTCTGTCAAAGAACCAGAAGAATATTGCAGGGCAGATCCACCTGTCAATCAAAACGACTTCCGGAGTTATAAATAAGCCTAGCAACGTCCAAGAaaatcaaaataatatttattgtGCCAAGCACGCCGCAGACATGAGTCGCTATGTTTTTAGAGGAACTGGGGATGCAAATACGGAGAAATACTGTGATAGTGCTAAGTGTTGTATTGCCTCCCCCGGACGCTTGCACTTTGGTGGAAAATTAAAAGGGAAAGATGTTAACGACTATTCGAGCGGGGCATCCAGCGCCTTCAGTGATCTTGACGACGCCGATAAGGAAGTGCGCAACTTGACTGCCAGAGCGTTCAAGAGTTTAGCATACCCTTATTTCGATGCCATCAATTTCAGCACCTCCAGCGAGTCCTCCACCTCCGAGCTGGGGGTGAACAGGTGGTCAACTTGTGTTGACCTTAAATATGGCAACATGAACATGTATCAGAGACAGGGGCCGAATAAAGGGTTTAATACAAGTTCTACGTCATCCTCTGAAATTGCTAAGGTTAAAGACAATAAAGGTTATAAGGGTTTGGTATTGGCTAATACTAATCCGCACACGAACAAGCTCTTTGCTTTGAATGGTGCCCTTTCTGGTCACTATAACCCATCTTCCGCAGCAAAGAAATGTGAGTTTACGGGGGAATTTGGGCAGGGGCACAGTGGGATTATTACGATCACAGGGACATTAAATGTTTGTTGTAATGTCACATCCGGGATGTCTGGGAGTGAAAGGCGCTCAAAATGTGCAAAAAACTCAACAGGATCACGTTCCACAGATGAAGTTACCAACGCATTGCCAAGCGGCCAGGGGAGTGAGAACAGGAAGCAACCATGTAATGCAGGGGAAACCATGGAAGACACACACAAGAAAGCAACATTAGCCTCGAGCCTTCTTAAAAATGTAATTTCTAAGAAAATGCAGTTTGAGCAGGAGCGTAAAATGGAGAGGGGGGAAATAAGCGAGCCCTATCACGCGCCATCTCCCTTTCTCAAACAAGAGCCCGAAATTAcgcacagggagagggagaggactacACCAAAGGAGTCTAAGGATTTTCAAAGGCAGAACTCGAAATACTCAGAGGCGAGTTCTGACCTAACTATTGTTTGTGTGGATGAATTAGGGGATTTAGTGGACACCAGCTCATGCGATGCCAAAGACGACTGTCGGAGACAAGACAGTTTAATTATTGCACCAGAAACTAATTCAGAGTCGACAAATGAAGTAGGAATCGATACTAAAATAGGAGCATTCGAAGCGTCCAAAAGCACGCTGCTTCGAAGTCAAAATAGCGCATTCAGATCCTGGAGGGACGGTGAGCTAGAGtttcaaaaggaacataaaaacGATAAAACTCCAGATGAGAAACCGTCTTCGTCCACCGACAACCAGGGGGAAACGGACTTGTACACCGATCCAGGCAACAGTAAACTTACCAAAATGACACATTTGCTTGTGCCAAATATCCAACTACTACTATCCAATGAGATAGAAGTTTCAAAACCCCTGCCGACTATGAATTATTTAACCCGCGCGCCCGCGGATCAAGGAGAGGAAGGTGTGAAGTTGCGCACCAACAACGTCGCAGATCCTAGAAGTATTGTAACATCTACATCGCCGGAAATTAAAATCAGTTTACGGAGTGTAAAAGAAAACAAAGGCGACCCTTTCAACGTTGCAAAGCTGGTGCCTCCCAATATAGGCTGTAACTCAGTCAAACTGATAAAGCCAGGAGACGAGCCCAGGTGCCAAGCGCTCGCTACGGCATTGAAGGGTGAGTCTTCCGAAAAATTACCACACTTCATGGTCAGAGACATACGAAACCACAGGGCTAAGCTGCAAACACCTATACACAAAGTTAGAGATGTGCGTAAATTGGTTAAAAGTTCTTATCACTTTGTGTCTTTGGATAATAACGTTACCGCCGGCGACTTTCACTCAGATCAGAAACTTTCCAAAAAGGGATCTTATAGAAACCCTTCGTCGCTTCCCCCCATCAAAATAAAGTATCAGTCTGTGAATACCAATAGCAATGAGAATGGGAAGCAATCTGTAAATCAAACAGAGAATTCTACATTTAAGCTCAACGAGGATTCATTTGAAGTTTTCAGGTCATCACCCCAGCAAGAGGCGGCCAAAAGCGGCAACCGACGATCGTCAGGGAGAGTGCCATTAGGCAATACAAAACAACTGAAAGGTGATTCGTCCGAATGCCCCATTGGACTTCTAATTGAAACCAGCACAGCTTCTATAAGACATGAGAAAACACTGGACATCGGTGACAAGACAAAACCTGAGTCTAAATTGTCCAACCTGGCTGCATTCGAGAAATTACACGATGCAGTCAAAACCATGGAGCAGTTGTATGTTTTTGATAGAAATGAGTGGAAGAGGAAATCCAAGCCACCCTCTATATTATCAGACAGTCATGCGCTCTCTCTCATATCCAGCAAGGAGGATGGGtcagagaaggagggaaggaatgTGGCCAGTGAGGGGGCAATGGAGAGttcgagagagagggaaagggccAACAGTATGGAGGCAGACAGGCCCGTCCAGTTCAGCAGAGCCTCTGCCGAGCCCGAAAACTGCCTCACTATCCCCGTCAAGTCTCACGACACCAGCGCCAAGCAAGCCGCCGTGTCTGCCGGCGGTGGCTATGAGAATACAGCCATTTATACCTTCGCCACCACGGGCatcaagacccagacccagacggCCAGCCCACCTGGTCATGGTGGCGCCCGGAAGCAGGAAGAGACCCGAAAGTCTCCACAGAAACGCTCCACCATCGTCATGAATACGAGAGCCCAGGACACGTTAACGGCCATGATCTACCAGATGCCCATGGCTCAAAGCATGGCGTCTGCCCAACTTCAGATGTACTGCTTCTCCCCGGCCATGGCCCCACATGCCGTGCCCCACACTCAGAGAAAGATGCTCTTTGACCCCAGCACAGGGAACTACTACCTGGTAGACACCCCTGTCCAGCCAGCCACCTGCCGCCTCTTCGACCCCGAGACGGGACAGTACGTGGAAGTGCCCATCTCCCAGCAGCCCATGTCCCCCATGCCCATGTCCATGCCCCAAATGCCGCCCGTGCCCATTTCCATGCCCATCTCACCCTTAGCCCTGAGCCCCAGATCCTACCCCACCTACACGATCTACCCAGGTTTCATGCCCGCCATTCCCGGCATTCCTCCCCTGATCCCCACAAGGATGCGGTCGCAGCTCTCCATGCCGTCGGAGCAGGAAGACTCCGGAGACAAAGGCGGTTCCTCCCAGCCAGACTACATGGGGAGTCCCTACTACATGGCCATGGGGTCTGGAAAGTCTCCCCAGGCTGGAGGCTCCAGTATGGGCCAGGTCCAGCAGCAGGGACAGCCAGGTGTCCAGGGGTTCTCCAATGGAAGCAGCCGGTGATCAGCATCACCTCCCAGCAGGGGCCCTGCATCATCGCCCCGCCTTCCTTCGATGGGACCACCATGAGCTTTGTGGTGGAGCGTAGGAGTGACTTTTGATGTTTCCTGATGTGTTCTGGATCGTCCAGGGCCTCTAATCCTATCGCCTGGACTTTATAGTTCATACATCCATCACGGTCATCACagtcatcatggttattagtcATCTCAACAGACATAGAATTGTTATTGCCTCACCCTTCTCTGAAGTAGGTTACCATCCCCTTCTTCTTATTTTAACACCTCTGTGTTAAACTTGGGAGCTTGGTTGACATTTTGAATTGTTAAACAATATCCACTCGTTAAAGGGATAATTTGGTagtttggcaatgaggccctttatctactttacCAGAATCAGATGAAGTCATAGATACCAttgttatgtctctgtgtccagtatgaaggaagttagaggtagtttcgcgaACGAATGCTAACTAGCGCTAGcaaaatgactggaagtctatgggtatcatcctctaacttccttcatactggatacAAATCCCAAGGTATCCCTTTAATAAAAGCATCATGTTTTTA

Function

NR:

description
uncharacterized protein LOC110500635

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578116.2 True 5084 mRNA 0.48 2 50217151 50224340
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110500633 LOC100694115 coding upstream 133827 50081554 ~ 50083324 (+)
LOC110500632 ddit4l coding upstream 160752 50053888 ~ 50056399 (+)
LOC110500631 NA coding upstream 173309 50035554 ~ 50043842 (+)
LOC110500629 LOC106608629 coding upstream 189754 49890587 ~ 50027397 (+)
LOC110500628 LOC106608626 coding upstream 444394 49680668 ~ 49772757 (+)
LOC110500637 LOC106608635 coding downstream 5866 50230206 ~ 50239928 (+)
LOC110500640 LOC106608639 coding downstream 33333 50257673 ~ 50263754 (+)
spata6l LOC106608638 coding downstream 39571 50263911 ~ 50270551 (+)
LOC110500641 LOC106608640 coding downstream 72720 50297060 ~ 50355717 (+)
LOC110500645 LOC106608645 coding downstream 257502 50481842 ~ 50486101 (+)
G1748462 NA non-coding upstream 17605 50199346 ~ 50199546 (+)
G1748450 NA non-coding upstream 35161 50181729 ~ 50181990 (+)
G1748286 NA non-coding upstream 262713 49927491 ~ 49954438 (+)
G1748237 NA non-coding upstream 335517 49881346 ~ 49881634 (+)
G1748236 NA non-coding upstream 336024 49880903 ~ 49881127 (+)
G1748480 NA non-coding downstream 4971 50229311 ~ 50229775 (+)
G1748484 NA non-coding downstream 20240 50244580 ~ 50247205 (+)
G1748486 LOC106608637 non-coding downstream 23116 50247456 ~ 50252566 (+)
G1748499 NA non-coding downstream 52376 50276716 ~ 50277372 (+)
G1748517 NA non-coding downstream 133035 50357375 ~ 50358092 (+)
LOC110500625 cj011 other upstream 607571 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 770525 49445839 ~ 49446626 (+)
G1747255 NA other upstream 1239393 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 1853225 48325100 ~ 48363926 (+)
G1746210 NA other upstream 2122032 48094767 ~ 48095119 (+)
LOC110500883 LOC106577571 other downstream 374570 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 892105 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 909749 51134089 ~ 51142008 (+)
G1749651 NA other downstream 1138346 51362686 ~ 51363380 (+)
G1749650 NA other downstream 1194629 51418969 ~ 51450475 (+)

Expression

LOC110500635(LOC106608610) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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LOC110500635(LOC106608610) Expression in each Bioproject

Bar chart with 14 bars.
LOC110500635(LOC106608610) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
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Co-expression Network