LOC110500880 (LOC106608636)


Basic Information

Item Value
gene id LOC110500880
gene name LOC106608636
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50272053 ~ 50288270 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958100.1
TGACTAAAGGTCTGTTTTGATAGTTGACCAACAGGCACGCCACTGCAAGTAATTGGTTGATGCTGCCTGAGATGGTTTGTGTCAAACAGCGTGTGCTCCTTTACTCTATGGATCATTCTTTCAACATGTACTCTCAGCCTGGCAATGGATTGGGTCTCTCTAACCTCATGCGCTGGCATCTGTGTGCGTCTTGACAGAAAGGCTGGCCGGTAGACCTTGCACGGAACAATGTAATCTACGAGAAAGCCCTTATCCACCATAAAGGCCATGTCAGGGGGATAGGCCTTGGTGTGTTGGTTAGGGAATATGCCTCCCTTTCCCACCTCGATAAGCAGTATTTTGGATTCCCGGGAGATATCCTGATGCGGATGCTCAAGCTGGTCATCCTGCCCCTCATCATCTCCAGCATGATAACAGGAGTGGCCGCCCTGGATTCGGATGTTTCCGGAAAGATAGGTTTGAGGGCTGTGGTTTATTACTTAACCACCACCATCATTGCAGTCATTTTGGGTATTGCATTGGTGATAACCATCAAACCTGGTGTCTCTCAGAAGGCAGAAAACATCGACAGGACAGAGATCACACAAAACGTCAACACCGTCGACACACTACTGGATCTTGTCAGAAACATGTTTCCTGAAAACATAGTGCAGGCTTGTTTCCAACAGTACAAGACAACGCGCAAAGAGTTGGAACCCTCTAAAGTGAAGGAGAACACTACAACCACAATGTTCCCTCCTTTCTCTACCACTGTCATGGCAACCATTTTCCCCCCAGAGAACATCACCAAGGACTATATAATAGTTGAGTCATATTCTGATGGGCTCAACGTGCTGGGCCTCATCGTGTTCTGTGTGGCGTTTGGCCTCGTCATCGGCAAGATGGGTGAAAGGGGACGCATCCTGCTGGAGTTCTTTGATGCTTTAAATGAGGCCACCATGAGGCTAGTTCAGATTATCATGTGCTATATGCCAGTGGGGATACTCTTCCTCATTGCTGCCAAGATCATTGAGGTAGAAGACTGGGAGATCTTCATGAAGTTGGGCATGTACATGGTGACAGTTTTGAGTGGCCTAGCTATCCATTCTACTGTTTTTTTGCCGCTGATCTACTTTGTCATTGTGAGGAAGAACCCGTATACCTTTGCCTTGGGGATGGCTCAGGCACTGGTCACTGCTCTCATGATCTCTTCCAGctctgccacccTGCCTGTCACCTTCCGCTGTGCCGAAGAGAACCTCCGGATCGACAAGAGGATCACCCGCTTCGTGTTGCCCGTGGGCGCCACCATCAACATGGACGGTACAGCTCTCTACGAGGCTGTCGCTGCCATCTTCATTGCCCAGCTCAACAACTATGATCTTGACGTGGGTCAGATTGTCACTATCAGTGTAACAGCAACAGTAGCCAGCATCGGAGCTGCCGGTGTACCTAACGCTGGTTTTGTTACCATGGTGATTGTGCTGACTGCCGTTGGACTACCGGCAAATGATGTCACTTTAATTATTGCTGTGGATTGGCTGCTAGACCGCTTCCGCACCATGATCAACGTGCTGGGAGATGCCTACGGAGCTGGCATCGTTCAGAAGCTGTCCAGGCGGGAGCTGGAGAGGATGGACGGCACCTCGGACGTGACTAACCCCTTCGCCCTGGGGACCACGCTGGACAACGAGGAGTGTGAGAAGAAGTCCTACGTCAACGGCGGCTTCACCGTCGACAAAACCGACGCCATCTCCTTCACCGAGACCTCCCAGTtttaggaggagggggggggggggggggcaaagaagTGCCAATGCTGCTAGATGTTTAGCCTGGTTCTGTTTGTAGCCTGGTTCTAGATCTGTGACCAACATTTCCTGTTGATGCAGGATTACTGCtggaggattattttcctgctgcagcacactggctcaaattaagatcctacatctgtagcaatATCAGCCACCACCATCTGTTCTATCTTGATTCTCTTTCCAGCACTGTCCCCGATGATCAGTATGTTTTTTTAACCACAAGTGGAAATCCTCAGCAGCCCTTAAAATGAGCTGGGCTGtatctgaaatgacaccctattgcttaactagtgcactactttagaccagggcctatgtAGAGAATGAGGTGTCCTTTGGGATGAACCCATGCTCTCTTTTACCAAAAGAGCTTCCATTGTTATGTTGACATAGTGCCGACAATGTACACATTCACTTTTGAATGAATCAATACTTTTGCTATTGTTTTTACATAGAGGGAGCAAAGGAGACTACAAGAGCCAGAGCTTTTGAAATGCATACCTACAACGCGTGTGTGTAACTGAAATAATATATCGCCGGACTGAGCTGTGTATATGTACTGTGAAAGAGCATGGAAGAAGAACTATGTTCTTGATGTTCAATACACTGTATATTGCAAAGATTCAAACACTTTGTTTGCTCTTCAGAAGCAAATTATTTTTGTGTGACTTATTTCGTTTTGTTCATTtttgttctgggggggggggtcagatacAAAAAAACAATCAAAGAAATCCATACAAAGACAACCCCAACCCATTCCCCCCCCCTTAGTCTCCACCCACCTGCCCGCATtctccctccccactcagaaACCATGCCTCCCACCCCATCTAGCCCTCCTCCCATAGAAAGCATGCCTCCCATCAGTCCCCCCCCATCCCCCAACAACATCCAGAGACCCCCGTACCACCCCTTCCCGTGGGCCTGAAAGCGgaaaaaaagtttaaataaatatatataattggtTTGTATGTGTGGCGCTTTAGCTGAGATTGTTCTTTACATAGTCAAGTATATTTGTTGGTGAAAGTTAATGTTCTTAAGCTTTACAATATGTGCCAAACATCTTATTCATTAATTCATTAACTTTATATCATTCATCCATGTAATTTTATTGCATGAAGCAatattacaaatatatacagtgggaaaCTTGTGATGAACATAGACCTGCTGAATGTCTTTTTCAAGTGACCAATAGCCTTTAAGAAAGTAGAGTTGATGGGCACACTAACGAGGTTTGAGTTATGAATTTAATTGAATACTGTGAAATATTTTCTTAATGAATTGCTAAAGAGGATGACTTTTTAATAAGGATGGTCTTGACAATAAAGGCTTTCTGATAACGaa
>XM_036958099.1
AACACACTTTCTACCGGTGTGGCGATTTCCGGTCAGTCTAGATGTTATCGACGATATAACGTTACTACCACTATGTCGCCGTTTTTTCACTAGGTGTCTTCAGGACTTGCCTCAAATTAATATTAATGATGTACATCGAATTGTTAAATCAGCCTCCGAGACTCCAGCTAGCAAGAATGAAAAGGGGTTCCAGATGTGTATAGGAAGCTACATAGACAACTATGAAGGGATAGGCCTTGGTGTGTTGGTTAGGGAATATGCCTCCCTTTCCCACCTCGATAAGCAGTATTTTGGATTCCCGGGAGATATCCTGATGCGGATGCTCAAGCTGGTCATCCTGCCCCTCATCATCTCCAGCATGATAACAGGAGTGGCCGCCCTGGATTCGGATGTTTCCGGAAAGATAGGTTTGAGGGCTGTGGTTTATTACTTAACCACCACCATCATTGCAGTCATTTTGGGTATTGCATTGGTGATAACCATCAAACCTGGTGTCTCTCAGAAGGCAGAAAACATCGACAGGACAGAGATCACACAAAACGTCAACACCGTCGACACACTACTGGATCTTGTCAGAAACATGTTTCCTGAAAACATAGTGCAGGCTTGTTTCCAACAGTACAAGACAACGCGCAAAGAGTTGGAACCCTCTAAAGTGAAGGAGAACACTACAACCACAATGTTCCCTCCTTTCTCTACCACTGTCATGGCAACCATTTTCCCCCCAGAGAACATCACCAAGGACTATATAATAGTTGAGTCATATTCTGATGGGCTCAACGTGCTGGGCCTCATCGTGTTCTGTGTGGCGTTTGGCCTCGTCATCGGCAAGATGGGTGAAAGGGGACGCATCCTGCTGGAGTTCTTTGATGCTTTAAATGAGGCCACCATGAGGCTAGTTCAGATTATCATGTGCTATATGCCAGTGGGGATACTCTTCCTCATTGCTGCCAAGATCATTGAGGTAGAAGACTGGGAGATCTTCATGAAGTTGGGCATGTACATGGTGACAGTTTTGAGTGGCCTAGCTATCCATTCTACTGTTTTTTTGCCGCTGATCTACTTTGTCATTGTGAGGAAGAACCCGTATACCTTTGCCTTGGGGATGGCTCAGGCACTGGTCACTGCTCTCATGATCTCTTCCAGctctgccacccTGCCTGTCACCTTCCGCTGTGCCGAAGAGAACCTCCGGATCGACAAGAGGATCACCCGCTTCGTGTTGCCCGTGGGCGCCACCATCAACATGGACGGTACAGCTCTCTACGAGGCTGTCGCTGCCATCTTCATTGCCCAGCTCAACAACTATGATCTTGACGTGGGTCAGATTGTCACTATCAGTGTAACAGCAACAGTAGCCAGCATCGGAGCTGCCGGTGTACCTAACGCTGGTTTTGTTACCATGGTGATTGTGCTGACTGCCGTTGGACTACCGGCAAATGATGTCACTTTAATTATTGCTGTGGATTGGCTGCTAGACCGCTTCCGCACCATGATCAACGTGCTGGGAGATGCCTACGGAGCTGGCATCGTTCAGAAGCTGTCCAGGCGGGAGCTGGAGAGGATGGACGGCACCTCGGACGTGACTAACCCCTTCGCCCTGGGGACCACGCTGGACAACGAGGAGTGTGAGAAGAAGTCCTACGTCAACGGCGGCTTCACCGTCGACAAAACCGACGCCATCTCCTTCACCGAGACCTCCCAGTtttaggaggagggggggggggggggggcaaagaagTGCCAATGCTGCTAGATGTTTAGCCTGGTTCTGTTTGTAGCCTGGTTCTAGATCTGTGACCAACATTTCCTGTTGATGCAGGATTACTGCtggaggattattttcctgctgcagcacactggctcaaattaagatcctacatctgtagcaatATCAGCCACCACCATCTGTTCTATCTTGATTCTCTTTCCAGCACTGTCCCCGATGATCAGTATGTTTTTTTAACCACAAGTGGAAATCCTCAGCAGCCCTTAAAATGAGCTGGGCTGtatctgaaatgacaccctattgcttaactagtgcactactttagaccagggcctatgtAGAGAATGAGGTGTCCTTTGGGATGAACCCATGCTCTCTTTTACCAAAAGAGCTTCCATTGTTATGTTGACATAGTGCCGACAATGTACACATTCACTTTTGAATGAATCAATACTTTTGCTATTGTTTTTACATAGAGGGAGCAAAGGAGACTACAAGAGCCAGAGCTTTTGAAATGCATACCTACAACGCGTGTGTGTAACTGAAATAATATATCGCCGGACTGAGCTGTGTATATGTACTGTGAAAGAGCATGGAAGAAGAACTATGTTCTTGATGTTCAATACACTGTATATTGCAAAGATTCAAACACTTTGTTTGCTCTTCAGAAGCAAATTATTTTTGTGTGACTTATTTCGTTTTGTTCATTtttgttctgggggggggggtcagatacAAAAAAACAATCAAAGAAATCCATACAAAGACAACCCCAACCCATTCCCCCCCCCTTAGTCTCCACCCACCTGCCCGCATtctccctccccactcagaaACCATGCCTCCCACCCCATCTAGCCCTCCTCCCATAGAAAGCATGCCTCCCATCAGTCCCCCCCCATCCCCCAACAACATCCAGAGACCCCCGTACCACCCCTTCCCGTGGGCCTGAAAGCGgaaaaaaagtttaaataaatatatataattggtTTGTATGTGTGGCGCTTTAGCTGAGATTGTTCTTTACATAGTCAAGTATATTTGTTGGTGAAAGTTAATGTTCTTAAGCTTTACAATATGTGCCAAACATCTTATTCATTAATTCATTAACTTTATATCATTCATCCATGTAATTTTATTGCATGAAGCAatattacaaatatatacagtgggaaaCTTGTGATGAACATAGACCTGCTGAATGTCTTTTTCAAGTGACCAATAGCCTTTAAGAAAGTAGAGTTGATGGGCACACTAACGAGGTTTGAGTTATGAATTTAATTGAATACTGTGAAATATTTTCTTAATGAATTGCTAAAGAGGATGACTTTTTAATAAGGATGGTCTTGACAATAAAGGCTTTCTGATAACGaa
>XM_036958098.1
gggtgtgtgtgtggaatggtgGTGGGTTGGAGGTAACCCTTACGGGTAAAAACCTGCTGATCGATCTCATTCTCTGTCACGCATACTttctgcctcacacacacacacacacagagcgacacacGCAGGAGGcgtttttctccctctccatcagaAACAACTGACGACCACGCGGGAGAGCTGCATCTTCTGTTTAGGTAGTTATAGCTGGAGCGTATACAGCTACTAGCCTCTACTGCCTGCTTACATCTGTCAGCTGGCCTCCCAATACGTGGATCCTTTTGTGTCCGACTTCCATTGTGCCATCTATAGTGGGGGCTAAAGGAAGTCGCCGCCAGTGGACAAGATGAAAGAACACAGGGGCTGGGACCTCAAAGGCTTACTGAAGAGGAACTGGTTGCTGATTGCGACCATTGTGTCGGTGCTGTTAGGGATAGGCCTTGGTGTGTTGGTTAGGGAATATGCCTCCCTTTCCCACCTCGATAAGCAGTATTTTGGATTCCCGGGAGATATCCTGATGCGGATGCTCAAGCTGGTCATCCTGCCCCTCATCATCTCCAGCATGATAACAGGAGTGGCCGCCCTGGATTCGGATGTTTCCGGAAAGATAGGTTTGAGGGCTGTGGTTTATTACTTAACCACCACCATCATTGCAGTCATTTTGGGTATTGCATTGGTGATAACCATCAAACCTGGTGTCTCTCAGAAGGCAGAAAACATCGACAGGACAGAGATCACACAAAACGTCAACACCGTCGACACACTACTGGATCTTGTCAGAAACATGTTTCCTGAAAACATAGTGCAGGCTTGTTTCCAACAGTACAAGACAACGCGCAAAGAGTTGGAACCCTCTAAAGTGAAGGAGAACACTACAACCACAATGTTCCCTCCTTTCTCTACCACTGTCATGGCAACCATTTTCCCCCCAGAGAACATCACCAAGGACTATATAATAGTTGAGTCATATTCTGATGGGCTCAACGTGCTGGGCCTCATCGTGTTCTGTGTGGCGTTTGGCCTCGTCATCGGCAAGATGGGTGAAAGGGGACGCATCCTGCTGGAGTTCTTTGATGCTTTAAATGAGGCCACCATGAGGCTAGTTCAGATTATCATGTGCTATATGCCAGTGGGGATACTCTTCCTCATTGCTGCCAAGATCATTGAGGTAGAAGACTGGGAGATCTTCATGAAGTTGGGCATGTACATGGTGACAGTTTTGAGTGGCCTAGCTATCCATTCTACTGTTTTTTTGCCGCTGATCTACTTTGTCATTGTGAGGAAGAACCCGTATACCTTTGCCTTGGGGATGGCTCAGGCACTGGTCACTGCTCTCATGATCTCTTCCAGctctgccacccTGCCTGTCACCTTCCGCTGTGCCGAAGAGAACCTCCGGATCGACAAGAGGATCACCCGCTTCGTGTTGCCCGTGGGCGCCACCATCAACATGGACGGTACAGCTCTCTACGAGGCTGTCGCTGCCATCTTCATTGCCCAGCTCAACAACTATGATCTTGACGTGGGTCAGATTGTCACTATCAGTGTAACAGCAACAGTAGCCAGCATCGGAGCTGCCGGTGTACCTAACGCTGGTTTTGTTACCATGGTGATTGTGCTGACTGCCGTTGGACTACCGGCAAATGATGTCACTTTAATTATTGCTGTGGATTGGCTGCTAGACCGCTTCCGCACCATGATCAACGTGCTGGGAGATGCCTACGGAGCTGGCATCGTTCAGAAGCTGTCCAGGCGGGAGCTGGAGAGGATGGACGGCACCTCGGACGTGACTAACCCCTTCGCCCTGGGGACCACGCTGGACAACGAGGAGTGTGAGAAGAAGTCCTACGTCAACGGCGGCTTCACCGTCGACAAAACCGACGCCATCTCCTTCACCGAGACCTCCCAGTtttaggaggagggggggggggggggggcaaagaagTGCCAATGCTGCTAGATGTTTAGCCTGGTTCTGTTTGTAGCCTGGTTCTAGATCTGTGACCAACATTTCCTGTTGATGCAGGATTACTGCtggaggattattttcctgctgcagcacactggctcaaattaagatcctacatctgtagcaatATCAGCCACCACCATCTGTTCTATCTTGATTCTCTTTCCAGCACTGTCCCCGATGATCAGTATGTTTTTTTAACCACAAGTGGAAATCCTCAGCAGCCCTTAAAATGAGCTGGGCTGtatctgaaatgacaccctattgcttaactagtgcactactttagaccagggcctatgtAGAGAATGAGGTGTCCTTTGGGATGAACCCATGCTCTCTTTTACCAAAAGAGCTTCCATTGTTATGTTGACATAGTGCCGACAATGTACACATTCACTTTTGAATGAATCAATACTTTTGCTATTGTTTTTACATAGAGGGAGCAAAGGAGACTACAAGAGCCAGAGCTTTTGAAATGCATACCTACAACGCGTGTGTGTAACTGAAATAATATATCGCCGGACTGAGCTGTGTATATGTACTGTGAAAGAGCATGGAAGAAGAACTATGTTCTTGATGTTCAATACACTGTATATTGCAAAGATTCAAACACTTTGTTTGCTCTTCAGAAGCAAATTATTTTTGTGTGACTTATTTCGTTTTGTTCATTtttgttctgggggggggggtcagatacAAAAAAACAATCAAAGAAATCCATACAAAGACAACCCCAACCCATTCCCCCCCCCTTAGTCTCCACCCACCTGCCCGCATtctccctccccactcagaaACCATGCCTCCCACCCCATCTAGCCCTCCTCCCATAGAAAGCATGCCTCCCATCAGTCCCCCCCCATCCCCCAACAACATCCAGAGACCCCCGTACCACCCCTTCCCGTGGGCCTGAAAGCGgaaaaaaagtttaaataaatatatataattggtTTGTATGTGTGGCGCTTTAGCTGAGATTGTTCTTTACATAGTCAAGTATATTTGTTGGTGAAAGTTAATGTTCTTAAGCTTTACAATATGTGCCAAACATCTTATTCATTAATTCATTAACTTTATATCATTCATCCATGTAATTTTATTGCATGAAGCAatattacaaatatatacagtgggaaaCTTGTGATGAACATAGACCTGCTGAATGTCTTTTTCAAGTGACCAATAGCCTTTAAGAAAGTAGAGTTGATGGGCACACTAACGAGGTTTGAGTTATGAATTTAATTGAATACTGTGAAATATTTTCTTAATGAATTGCTAAAGAGGATGACTTTTTAATAAGGATGGTCTTGACAATAAAGGCTTTCTGATAACGaa
>TU2002568
GTTAGTAGAGCCAATAACCCTTATGCATATTCCATGATCGAACACACTTTCTACCGTTTTTTCACTAGGTGTCTTCAGGACTTGCCTCAAATTAATATTAATGATGTACATCGAATTGTTAAATCAGCCTCCGAGACTCCAGCTAGCAAGAATGAAAAGGGGTTCCAGATGTGTATAGGAAGCTACATAGACAACTATGAAGGTGAGTACCAAGTCAGTGACAGATGTAACGTCGGCTAGCTACaatcattagctagctaatttaactATTAACTGTAACTAGCTAGTTACTTCGTAAAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958100.1 False 3152 mRNA 0.46 12 50272053 50283521
XM_036958099.1 False 3103 mRNA 0.46 12 50272053 50286302
XM_036958098.1 False 3307 mRNA 0.47 12 50272053 50288270
TU2002568 True 301 lncRNA 0.38 2 50285977 50286342

Neighbor

gene id symbol gene type direction distance location
LOC110500638 LOC106608637 coding downstream 14388 50251141 ~ 50257665 (-)
LOC118942942 NA coding downstream 23061 50246542 ~ 50248992 (-)
LOC110500634 LOC106608634 coding downstream 102456 50095682 ~ 50169597 (-)
LOC118942791 NA coding downstream 452689 49811815 ~ 49819364 (-)
trnaa-ugc-150 NA coding downstream 605514 49666464 ~ 49666539 (-)
LOC110500642 LOC106608642 coding upstream 50677 50338947 ~ 50341393 (-)
LOC110500881 LOC106608643 coding upstream 67904 50356174 ~ 50389454 (-)
LOC118942943 NA coding upstream 97692 50385962 ~ 50389061 (-)
LOC110500643 LOC106608644 coding upstream 124786 50413056 ~ 50472176 (-)
LOC110500644 fa29a coding upstream 187759 50476029 ~ 50482772 (-)
G1749004 NA non-coding downstream 863 50270980 ~ 50271190 (-)
G1748959 NA non-coding downstream 72468 50199258 ~ 50199585 (-)
G1748954 NA non-coding downstream 84717 50187122 ~ 50187336 (-)
G1748889 NA non-coding downstream 188729 50081656 ~ 50083324 (-)
G1748854 NA non-coding downstream 218283 50053523 ~ 50053770 (-)
G1749013 NA non-coding upstream 65623 50353893 ~ 50355710 (-)
G1749064 NA non-coding upstream 72015 50360285 ~ 50404359 (-)
G1749098 NA non-coding upstream 161279 50449549 ~ 50451358 (-)
G1749149 NA non-coding upstream 298161 50586431 ~ 50586636 (-)
G1749154 LOC106608695 non-coding upstream 303293 50591563 ~ 50598287 (-)
G1747934 NA other downstream 683265 49587696 ~ 49588788 (-)
G1747906 LOC106608620 other downstream 686875 49459688 ~ 49585178 (-)
G1747908 LOC106608618 other downstream 757889 49512069 ~ 49514164 (-)
LOC110500619 LOC106608618 other downstream 770126 49493629 ~ 49502064 (-)
LOC110500878 LOC102779023 other downstream 847723 49392218 ~ 49424330 (-)
LOC110500654 LOC106608650 other upstream 245735 50534005 ~ 50542563 (-)
G1749122 LOC106608652 other upstream 254165 50542435 ~ 50552525 (-)
LOC110500668 trmt44 other upstream 748433 51036609 ~ 51051426 (-)
G1750625 NA other upstream 948615 51236885 ~ 51237163 (-)
c21h11orf68 cssa07h11orf68 other upstream 1197430 51485700 ~ 51501323 (-)

Expression


Co-expression Network