LOC110500642 (LOC106608642)


Basic Information

Item Value
gene id LOC110500642
gene name LOC106608642
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50338947 ~ 50341393 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578123.2
acagtttcctgtgtgtatcaagaatggtcagcCAGCCAAAAGagattcacaacaacaaaaaaatgattcACTCCAGCAGGGAACTGATTACAGGAATACTGCATGTTGTAAGCGGAGACAGAGTGGGCGCAGTTAGACAGAAGCAAATATAAAAGGAAAATGCTATATTTAGTTGTAAGACGTGAGCGCCCAGAGTCCGCAGCTGAACTGAAGGACTTCCATGTGATTTGCTGAACGAATGCAGTCCACTCAAGAACATGGCTATGAACTGGAATTCCTGTCTCACTTTTGTCGTTTCATTTCTGGTCttcaagttatcccacttaaCGGAGTTTGAGACCACTGTTCCCAGTGAGACGCAGCTTGCCATCCTGGGGCAACATATAGTCCTAGACTGCAGCTTCCCTGTGGACAAACAATGGGATCCAACGCGGTGCCAGATTGAATGGAAGTTAGACAAGGTGGTGGTCCACAGTTTCTACTATGGTCAGGACCACCTGAACGACCAGAGCAGTCGCTATGTCAACAGAACCAGCCTGTACCACTCTGATATACAGAAGGGGAACGCTTCTCTCAGGCTGGAACGTGCCACTCTGGGAGATGAGGGAAACTATACCTGCACTGTGCACACAGAAATGGGCCCAAAGAGGACATCTGTATCCCTTAAATTAGCAGCATTCTACCCTGAGCCTCGCCTGAAGTTCTCAACCTCTGCCTGTGGTGTGGAGCTACTCTTGACCACCGAGGGGTACCCCCGACCCTCAGTGCAGTGGCTGACTGTCAGTGGCGAGGACGTCGGCGACGACACAGTCACACACCTCTCCCAGGACACACAGGGCCTATACACTGTTTCGAGCACAGTATCCCTGCAAGGAGCGGTCAATAAGACCCTGACGTTTGTCTTAAAGAACGAGGCTCTGGGACAGGAGATCAGGAGAAACATCACACTTCTCTCAGGAAATAGTGTTGACGTGTCACCTGGGGTTTACCAAGAGAGATGGTGGTTTGTTATTACTGTCCTGGCTGTGATGCTGAAATACTTGTTGTGTAACTAAAATGTAACCATTTGTTGTTTTGCTTCTTGGACTAATTTGTAATGATGCACAATGCCACTAAGAAAATTGAATAAACTGTACAGAATGCATCTGTAAATAAGTAAGT

Function

NR:

description
CD276 antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578123.2 True 1161 mRNA 0.47 4 50338947 50341393

Neighbor

gene id symbol gene type direction distance location
LOC110500880 LOC106608636 coding downstream 50677 50272053 ~ 50288270 (-)
LOC110500638 LOC106608637 coding downstream 81282 50251141 ~ 50257665 (-)
LOC118942942 NA coding downstream 89955 50246542 ~ 50248992 (-)
LOC110500634 LOC106608634 coding downstream 169350 50095682 ~ 50169597 (-)
LOC118942791 NA coding downstream 519583 49811815 ~ 49819364 (-)
LOC110500881 LOC106608643 coding upstream 14781 50356174 ~ 50389454 (-)
LOC118942943 NA coding upstream 44569 50385962 ~ 50389061 (-)
LOC110500643 LOC106608644 coding upstream 71663 50413056 ~ 50472176 (-)
LOC110500644 fa29a coding upstream 134636 50476029 ~ 50482772 (-)
LOC118943015 NA coding upstream 137214 50478607 ~ 50478737 (-)
G1749004 NA non-coding downstream 67757 50270980 ~ 50271190 (-)
G1748959 NA non-coding downstream 139362 50199258 ~ 50199585 (-)
G1748954 NA non-coding downstream 151611 50187122 ~ 50187336 (-)
G1748889 NA non-coding downstream 255623 50081656 ~ 50083324 (-)
G1749013 NA non-coding upstream 12500 50353893 ~ 50355710 (-)
G1749064 NA non-coding upstream 18892 50360285 ~ 50404359 (-)
G1749098 NA non-coding upstream 108156 50449549 ~ 50451358 (-)
G1749149 NA non-coding upstream 245038 50586431 ~ 50586636 (-)
G1749154 LOC106608695 non-coding upstream 250170 50591563 ~ 50598287 (-)
G1747934 NA other downstream 750159 49587696 ~ 49588788 (-)
G1747906 LOC106608620 other downstream 753769 49459688 ~ 49585178 (-)
G1747908 LOC106608618 other downstream 824783 49512069 ~ 49514164 (-)
LOC110500619 LOC106608618 other downstream 837020 49493629 ~ 49502064 (-)
LOC110500878 LOC102779023 other downstream 914617 49392218 ~ 49424330 (-)
LOC110500654 LOC106608650 other upstream 192612 50534005 ~ 50542563 (-)
G1749122 LOC106608652 other upstream 201042 50542435 ~ 50552525 (-)
LOC110500668 trmt44 other upstream 695310 51036609 ~ 51051426 (-)
G1750625 NA other upstream 895492 51236885 ~ 51237163 (-)
c21h11orf68 cssa07h11orf68 other upstream 1144307 51485700 ~ 51501323 (-)

Expression


Co-expression Network