LOC110500881 (LOC106608643)


Basic Information

Item Value
gene id LOC110500881
gene name LOC106608643
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50356174 ~ 50389454 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958110.1
aggtttcCTCATTATCATACGAACGTGACCTCGTTTGTGCTGCGGGCAGAATACTAGTCAGTTCTAAATGCAAACCCTAGTAGGCTGACGTTTGTTGCTCTTTCCTGTGTTGGATTGTGCATTGTTCTACTTTTGTCATTGTGACATCCGTATCAAGGGATAGGCTAcattatgtttattttatttggaTGATTCGAGCAGGCAGCAAGTTGCAAGAACTGGATCGCTGAACCTGCCACTTGCAAGCCCATGATCCCGTTGATTTATCCGCGTATGAAGCGTACTGTATGTTGATGAAATTCAAGCATGTCAGGAAAACAATTTAAAGGTCATGAGGTCAGTTGCTGcatcaaatattttatttttggaTTTAACATAATATTTTGGTTGCTCGGTGTGGCCTTCCTGGGCATTGGACTATGGGCCTGGAATGAGAAGGGTGTTCTCTCCAACATCTCGTCCATCACAGACCTGGGGGGCTTTGACCCCGTCTGGCTCTTCTTGGTGACGGGAGGGGTCATGTTCATCCTGGGCTTTGCCGGTTGCATCGGAGCGCTGAGGGAAAACACCTTCCTGCTCAAGTTTTTTTCTGTGTTCCTGGGGATCATCTTCTTCCTGGAGCTGACAGCTGGAGTGTTGGCCTTCACCTTCAAGGACTGGATCAAGGACCAGCTCAACTTCTTCATCAATAACAACATCCGGGCATATCGTGACGACATCGACCTCCAGAACCTTATAGACTTCACTCAGGAATATTGGGATTGTTGCGGCGCATTCGGAGCGGACGACTGGAACCTCAACATCTATTTTAACTGCACGGACACCAACCCCAGCCGGGAGAAATGTGGAGTccccttctcctgctgcaccaaGGACCCTGCGGAGGATGTGATAAACACGCAGTGTGGCTATGACGTACGAGCCAAAACTGACGTAGAACAGAAGACCTACATCCATGTGAAGGGCTGTGTGCCACAGTTTGAGAAGTGGCTACAGGACAACCTGACGCTAGTGGCTGGGATCTTCATAGGAGTTGCGTTGTTACAGATATTTGGAATATGCTTGGCACAAAACTTAGTTAGTGACATCGAAGCTGTGAGAGCAAGCTGGATgcccccgccctctctctccatgcacCGACCCCTGCCTCACTCTGGAAAAAAAGGGTCTGCATACTACGCATGAGGAACGTACTCGCGAGCGTGTGTATGAACTGTAGCCGTTTATTTACCTGATGTCGCTGCCCGGCTTGACCCAGGAACGCACAGGTCCAAGGTCTCTTCAGCATGGCTACGCCAGTCTCGGAGCATCAAAAGATGCTAGAACTAGGAATGATACCACCTGCACCATATTCCGTCATGATGACTGGCACATTCTGATCCTTTTTAAAGATGTttggggttgcaaaattccagtaactttccagaaatcccagttggaagatTCCTCCAATCAGGATTTCTGGGAATTTGGGGAAGTTACCCACGCTTTGCATCCCATTTGTTCCATGTGGTTCCATCCATGTGGTAAACACTGTGTAGAAATGTACAGAAAATAATGAAGACAAAAAAAattacttggggggggggggggggggggggtgtttgtaaATGCACTGCATGCCTATCACAATGGCATGGACTCGTTTAAATTCATGATGTACAGAAGCTCTTATTGACAGGTATTTTTAACAGTAAAATGGTAGCTGTATGTGGCGACACTGAGCATTAGGGAAGAGGGTAATGGTGCTAGAATACAAATGTACAGTAGTAGTCGCAGCCCTCAAGTCGTTCACTTTGAACTGCAGTAGCCTTGTCGGCTCAAGCGTTTTTGTGGCACAGATGAGCATTCGTTATATTTCATGGCATCTCTACCTGGGTGAAATACATACAGGTACGTTACATACTTTCAAATACTTGAGGTGGGCCTGATTTAGCACTTTTGGGGGGGACTAGTCAATTGGTTCTATTGTAACAGACAAGCTAAATCAAGTATCAatgtatttgacccaggtctgatCTCTACACACTCTCCATTAAAATGAATTGTCAATACATTCAATGAACTGAAACTTCATGTCCATTTCTTGCTATGGTAGTCCTCTGTTTTCAATACTGCTAAGTGATGTGTCAATCTTTAGGAATCCCTGTCACTTCATATTCAATCTTGTTCTGAGGGCTGAATGTGATTTGTTCGATTGCTCAGCGGGAGGAGCTTACATTGACCAGTGAGTGAATAAAACTCACTTCCTGACATTTGTTGGTGGTGGAGGGCGTAACACATGGGTTGCTGTGCTGAGGGTTTCTAGCTCAACGATCAGTGAGCCAAATTAAATAAATGCTTGTAGGGAGGTGGCAGGCGCGTTAAATACAGGTTGAGACAAGTTCCCTGTTGAGGATCCCCATGTCTTGTTTTCCAACCTTGAACTTTCTAAAGTTAACCAATCACTTTTCACATTTGTCTACCCATTTCTTGTGACTGGTTAAAGGACCAAAACCTAAGGCAGGTGGATGGGGTCCTGGGTGGCAGAGGTCGTAACATGAGGGTGTCCATGCATTAGGTCCTCGGTTCGATTCCTCGTGTGGCTTTTAAAATAACTTTTACTCCTTTCTGCCCTCAGAACAAGAAAATAAGGGTTTGATTCAATCTGTATCGTGGAAGTTCAGTGCTATAGCGCAATTGACACTTAATGTCCCACGTTCACGGAGATTGCGCTCATGGTAGACTTTGCATATAggctcaacagcttctacccccccaagccattagactgctgaacaattcaggAACATTTCCACTGATACCCCCTCccctcttgtacactgctgctacttgccgtttgtttgttacctatacatagtcacttcgcccccacctacatgtacagattacctcaactagcctgtacctctgcacactgactcggtaccggtgccccatCTATATAGCCTGGTTATTCttagtgttactttttatttttacctaCTTGGTAAATTATTTTGTTCTTGAACGGCATTggaggttaagggcttgtaagtaagcattaaggtaaggtctacacttgtttgATTTGATATCGGCTCAATCGCAAACTACCGTTACATTTGAAATCGCACTGAACTTCCacgatacggattgaatcgagccctttgtttttctttcatgcccatgaaataaataatttttgtTGACCTGC
>XM_036958111.1
aggtttcCTCATTATCATACGAACGTGACCTCGTTTGTGCTGCGGGCAGAATACTAGTCAGTTCTAAATGCAAACCCTAGTAGGCTGACGTTTGTTGCTCTTTCCTGTGTTGGATTGTGCATTGTTCTACTTTTGTCATTGTGACATCCGTATCAAGGGATAGGCTAcattatgtttattttatttggaTGATTCGAGCAGGCAGCAAGTTGCAAGAACTGGATCGCTGAACCTGCCACTTGCAAGCCCATGATCCCGTTGATTTATCCGCGTATGAAGCGTACTGTATGTTGATGAAATTCAAGCATGTCAGGAAAACAATTTAAAGGTCATGAGGTCAGTTGCTGcatcaaatattttatttttggaTTTAACATAATATTTTGGTTGCTCGGTGTGGCCTTCCTGGGCATTGGACTATGGGCCTGGAATGAGAAGGGTGTTCTCTCCAACATCTCGTCCATCACAGACCTGGGGGGCTTTGACCCCGTCTGGCTCTTCTTGGTGACGGGAGGGGTCATGTTCATCCTGGGCTTTGCCGGTTGCATCGGAGCGCTGAGGGAAAACACCTTCCTGCTCAAGTTTTTTTCTGTGTTCCTGGGGATCATCTTCTTCCTGGAGCTGACAGCTGGAGTGTTGGCCTTCACCTTCAAGGACTGGATCAAGGACCAGCTCAACTTCTTCATCAATAACAACATCCGGGCATATCGTGACGACATCGACCTCCAGAACCTTATAGACTTCACTCAGGAATATTGGGATTGTTGCGGCGCATTCGGAGCGGACGACTGGAACCTCAACATCTATTTTAACTGCACGGACACCAACCCCAGCCGGGAGAAATGTGGAGTccccttctcctgctgcaccaaGGACCCTGCGGAGGATGTGATAAACACGCAGTGTGGCTATGACGTACGAGCCAAAACTGACGTAGAACAGAAGACCTACATCCATGTGAAGGGCTGTGTGCCACAGTTTGAGAAGTGGCTACAGGACAACCTGACGCTAGTGGCTGGGATCTTCATAGGAGTTGCGTTGTTACAGATATTTGGAATATGCTTGGCACAAAACTTAGTTAGTGACATCGAAGCTGTGAGAGCAAGCTGTTTATTTACCTGATGTCGCTGCCCGGCTTGACCCAGGAACGCACAGGTCCAAGGTCTCTTCAGCATGGCTACGCCAGTCTCGGAGCATCAAAAGATGCTAGAACTAGGAATGATACCACCTGCACCATATTCCGTCATGATGACTGGCACATTCTGATCCTTTTTAAAGATGTttggggttgcaaaattccagtaactttccagaaatcccagttggaagatTCCTCCAATCAGGATTTCTGGGAATTTGGGGAAGTTACCCACGCTTTGCATCCCATTTGTTCCATGTGGTTCCATCCATGTGGTAAACACTGTGTAGAAATGTACAGAAAATAATGAAGACAAAAAAAattacttggggggggggggggggggggggtgtttgtaaATGCACTGCATGCCTATCACAATGGCATGGACTCGTTTAAATTCATGATGTACAGAAGCTCTTATTGACAGGTATTTTTAACAGTAAAATGGTAGCTGTATGTGGCGACACTGAGCATTAGGGAAGAGGGTAATGGTGCTAGAATACAAATGTACAGTAGTAGTCGCAGCCCTCAAGTCGTTCACTTTGAACTGCAGTAGCCTTGTCGGCTCAAGCGTTTTTGTGGCACAGATGAGCATTCGTTATATTTCATGGCATCTCTACCTGGGTGAAATACATACAGGTACGTTACATACTTTCAAATACTTGAGGTGGGCCTGATTTAGCACTTTTGGGGGGGACTAGTCAATTGGTTCTATTGTAACAGACAAGCTAAATCAAGTATCAatgtatttgacccaggtctgatCTCTACACACTCTCCATTAAAATGAATTGTCAATACATTCAATGAACTGAAACTTCATGTCCATTTCTTGCTATGGTAGTCCTCTGTTTTCAATACTGCTAAGTGATGTGTCAATCTTTAGGAATCCCTGTCACTTCATATTCAATCTTGTTCTGAGGGCTGAATGTGATTTGTTCGATTGCTCAGCGGGAGGAGCTTACATTGACCAGTGAGTGAATAAAACTCACTTCCTGACATTTGTTGGTGGTGGAGGGCGTAACACATGGGTTGCTGTGCTGAGGGTTTCTAGCTCAACGATCAGTGAGCCAAATTAAATAAATGCTTGTAGGGAGGTGGCAGGCGCGTTAAATACAGGTTGAGACAAGTTCCCTGTTGAGGATCCCCATGTCTTGTTTTCCAACCTTGAACTTTCTAAAGTTAACCAATCACTTTTCACATTTGTCTACCCATTTCTTGTGACTGGTTAAAGGACCAAAACCTAAGGCAGGTGGATGGGGTCCTGGGTGGCAGAGGTCGTAACATGAGGGTGTCCATGCATTAGGTCCTCGGTTCGATTCCTCGTGTGGCTTTTAAAATAACTTTTACTCCTTTCTGCCCTCAGAACAAGAAAATAAGGGTTTGATTCAATCTGTATCGTGGAAGTTCAGTGCTATAGCGCAATTGACACTTAATGTCCCACGTTCACGGAGATTGCGCTCATGGTAGACTTTGCATATAggctcaacagcttctacccccccaagccattagactgctgaacaattcaggAACATTTCCACTGATACCCCCTCccctcttgtacactgctgctacttgccgtttgtttgttacctatacatagtcacttcgcccccacctacatgtacagattacctcaactagcctgtacctctgcacactgactcggtaccggtgccccatCTATATAGCCTGGTTATTCttagtgttactttttatttttacctaCTTGGTAAATTATTTTGTTCTTGAACGGCATTggaggttaagggcttgtaagtaagcattaaggtaaggtctacacttgtttgATTTGATATCGGCTCAATCGCAAACTACCGTTACATTTGAAATCGCACTGAACTTCCacgatacggattgaatcgagccctttgtttttctttcatgcccatgaaataaataatttttgtTGACCTGC

Function

NR:

description
tetraspanin-5-like isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17345 TSPAN5; tetraspanin-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958110.1 False 3196 mRNA 0.45 11 50356174 50389454
XM_036958111.1 True 3083 mRNA 0.45 10 50356174 50389454

Neighbor

gene id symbol gene type direction distance location
LOC110500642 LOC106608642 coding downstream 14781 50338947 ~ 50341393 (-)
LOC110500880 LOC106608636 coding downstream 67904 50272053 ~ 50288270 (-)
LOC110500638 LOC106608637 coding downstream 98509 50251141 ~ 50257665 (-)
LOC118942942 NA coding downstream 107182 50246542 ~ 50248992 (-)
LOC110500634 LOC106608634 coding downstream 186577 50095682 ~ 50169597 (-)
LOC110500643 LOC106608644 coding upstream 23602 50413056 ~ 50472176 (-)
LOC110500644 fa29a coding upstream 86575 50476029 ~ 50482772 (-)
LOC118943015 NA coding upstream 89153 50478607 ~ 50478737 (-)
LOC110500648 plin2 coding upstream 107611 50497065 ~ 50502262 (-)
larp7 larp7 coding upstream 119043 50508497 ~ 50518222 (-)
G1749013 NA non-coding downstream 464 50353893 ~ 50355710 (-)
G1749004 NA non-coding downstream 84984 50270980 ~ 50271190 (-)
G1748959 NA non-coding downstream 156589 50199258 ~ 50199585 (-)
G1748954 NA non-coding downstream 168838 50187122 ~ 50187336 (-)
G1749098 NA non-coding upstream 60095 50449549 ~ 50451358 (-)
G1749149 NA non-coding upstream 196977 50586431 ~ 50586636 (-)
G1749154 LOC106608695 non-coding upstream 202109 50591563 ~ 50598287 (-)
G1749168 NA non-coding upstream 227873 50617327 ~ 50617528 (-)
G1749178 NA non-coding upstream 243548 50633002 ~ 50633320 (-)
G1747934 NA other downstream 767386 49587696 ~ 49588788 (-)
G1747906 LOC106608620 other downstream 770996 49459688 ~ 49585178 (-)
G1747908 LOC106608618 other downstream 842010 49512069 ~ 49514164 (-)
LOC110500619 LOC106608618 other downstream 854247 49493629 ~ 49502064 (-)
LOC110500878 LOC102779023 other downstream 931844 49392218 ~ 49424330 (-)
LOC110500654 LOC106608650 other upstream 144551 50534005 ~ 50542563 (-)
G1749122 LOC106608652 other upstream 152981 50542435 ~ 50552525 (-)
LOC110500668 trmt44 other upstream 647249 51036609 ~ 51051426 (-)
G1750625 NA other upstream 847431 51236885 ~ 51237163 (-)
c21h11orf68 cssa07h11orf68 other upstream 1096246 51485700 ~ 51501323 (-)

Expression


Co-expression Network