LOC110500644 (fa29a)


Basic Information

Item Value
gene id LOC110500644
gene name fa29a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50476029 ~ 50482772 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578127.2
AATATTTGGCGGTTTGAAGAAGACATTCATCGAAGTTGGCATGCGTAATGTCGATTAACTACATATGTATGGTGTACATGCTTTATTTTTTACGGCAATTGTATTTGTATCATTTGTTGGAATTCGACGACGGTAACGTTAGTTACTATCGCTAGCTATGTTCGCTTTCTGCCCAACTAACGTCAACTAGCTAGACAATTTAGTTAGCTACCGTTAATTTAGTTGCATCGTATGTTTCAGTCTTCTGCTAGCTAGCAGTTAGATCACTTTTAGATCTCAAAACTGTCAGCTTGCTGGAAGAATGTCGACTCTTCAGAGAACGAACGGTAAATATCTGTGGTGGTCTCTTGTGGGTCTTGGATTTCAACCCGAAGTCGCAGCATCATCAGGAGCCAGCAAAGCCAATGTTAAACACATCATTCTTGGACCCAATATGTTTGACAAACCAAACAAGGACGCATTCTACATAGTTACCAATTTCCTGTTAGAAAAACTCAACCCCGCACGCTTCCACGATGCATACAGGCATTGCTGGCCAGTGTTGGACCACAAAGCAGATGCCGAATTCCGTAAGGTGACCTGTGCTTGGCTGCGAGATCTAATGGATGAGCAGGGGAGCACAGTTCCCAAAGTGGTGGCGTCACTATTCCTCTCGCCTGGTGGACCCAAGTTCGTCAACCTTATGCTCCATCTAGCCAATCATGTCATGTTGCATGAGATGAAGACATTTTCAACAGATGGCACATGGGTCCCAGAGGCAGCGGCAGCCCCTGCCTCTTCTGTGGAAATGGCGCTGAAGCGGTTTCAGCTGGTCAAGACCAGATTCCTGAGAGGAGCTGTGGAACAGGACCTGATGCTGCAGGAGTACCAGAGACAGGCCCAGTCTCGAGTGAAGTCTTTGAGAGATTGGAGGGCTGAAGATGCAAAGTATGATGATTTGCATAAGCGTCACAAGAAAGTTGAACAGGAGGGAACCCCTCAAGCTGACAAGATTCAGAAGGTGCGCTCCTTGTGGTCATTCATGGACGGAGTGCTGTCCACCCTGGAGGAGGAGCGGCGGGTGGTGGAGAGTGTCATCAGGGGAGATGTGGACCAGTACACCATGGATGGGACGGACCTTGCCCTCAAAATCCCCCGGGTTCTGCTAGAGCAGATAGAGCAGTTATCCCACCTGTCGAGTGTGGGCAGTGTTTACGAGGCAGGCCAGCTGAACATCCTCTGTATGCTGGAGCTGCTCCACCAGGCTCTGGTCCTCCTAGGGGAGGAAAGGACCCGGGTGGCAGGACACACCCCCATTGCCCAGCTCCACCCTTTTCACCTGCAGGAGAGGAACCTACAGATGGCCCGTGCCATGGAGGATCTCCGAGTCATGAGGAAGAGGATTTCAAAGGAAGAAATTCCCGAGGTGAAGAGCCTCATCAGAAAGTTGGAGGCGGAGTGGGACCGGAAGTGGGCGGACTGTTTGAAACGCACGCCGCTGACCTCGTTCCTCAACAAGGATCCTgCCCTGGACTTTCTGTTCCCCATGGCTCCTCTGTCCTTTGAGCCGGCCACCGACGCCAGCTTCAAATCCAGCATCTTCTCTCAGTATCCGGCCAATCTACCCGAATTTCCTGAGGAGAAGCCTGTGGCGACTGACTCTGTTCCAATGGAGACCGTTACCACAATGGATTATACCCTCAAAAGCCTCTACCCTCCAGCTGTTGAGATGATTACATCTCTTCCTAGTGTGGCCATTTTCCCACTGACTCCCCTCCCTGCACTTTCTGAATCTCCTCTGGCTGTCCCTGCCAAAGCTCCCTCACCAAGCCACCTGCCGGCCAGTGTAAGGAAGACTCCTCGTGTTTCTGCAGTGAAGAAAAAGGCTCAGATCCTTGACTCTGAGTTGGACAACTTAGTAAATCGGTTTGCGGAGGCTGTGACCCCCAGCCCTGGCAACATAAGTTTACGAGGACTTGAGCTGGGAGACATACTCGATACTCTTGGCGAAGACCCTTTCTCCACCAGGAAGCAGATTCCACGCACCCCAGAGAGTTTGAttTTGGATGTGAAGAGTTCCTGGCAAAGGGCGGTGGAGGAAGGGGAGGCTCAGAAGGCCTGCCTGTCTGCTACATTTGACTGCGACAACATCCGTGGGTGCCTCATGCCCCTCAGCGAGGTACATGAGGCCTCCCTTGGCCATGACTTTTCCTCCCTGAGCACAAGCCTGGATCCCACCAATGGGTGCAGTACTGCAGCCCCCCAGCAGGCTTCCCTCATGTCCACCCTGTCCTGGGACTCCTCCAACATGGAGGCCCTCAATAGCCTGAGCAACAACAACGTGGTCCAGTTCAGCATCAACCAAGAGGTGTTCCCTGAGCAGTACAGTATAGATCAGGAGACACTTCCCGAGCTGCCGGGCAACGACAGCAGCCTCCTGACCTCCATTAACTCCAGGGACATATCCAACACTGAGGAGGAAGAGCTGCTCCTCCCCCACATCCCCTATCTCCTCCCCACAGAGACTGAGCCAGCCCTGCTGGATGCACGCAGGCGTTTGGACAAGATCCAGCAGGCTTTTGGAGAGGCCTCCTTCATGGACCACCGCCAGGGGGTGCCAGAGCCCTCTCTCTCACAGCATGACAAGAGGACCCTGGACGCCAGAGACAGGCTGATGGCAGCAACACTGGAGACCTCAGCCACAGTGGAAGTGACGGACAAGGTCTTTTCCCTGGATCTGGACACTCTAGAGAGCCCCTCACCGCCAAGAACAGGGCAGTATAACCTCCCGCAACTGTTCACATTCTCCCCCATAGACGACCTGTAGTGTCTCCACATTATATATTTTCTGAGCAGTCTTCTAGTTTCTTACTTTTTCACAATTAAGGCTAACTCATTTCAATGCACATGCAATTAAAATATTTGTACATATGTGTGCCAATCTAACATGGTCTGAAACTAACATGgaaacaagttttttttaaattatttatgtCTAAGATGACATGATGGGTGagaataaacaaacatgaattGTATATTGTTAAATGAATTAAATTGTTACCAATGTCAA
>XM_021578128.2
AATATTTGGCGGTTTGAAGAAGACATTCATCGAAGTTGGCATGCGTAATGTCGATTAACTACATATGTATGGTGTACATGCTTTATTTTTTACGGCAATTGTATTTGTATCATTTGTTGGAATTCGACGACGGTAACGTTAGTTACTATCGCTAGCTATGTTCGCTTTCTGCCCAACTAACGTCAACTAGCTAGACAATTTAGTTAGCTACCGTTAATTTAGTTGCATCGTATGTTTCAGTCTTCTGCTAGCTAGCAGTTAGATCACTTTTAGATCTCAAAACTGTCAGCTTGCTGGAAGAATGTCGACTCTTCAGAGAACGAACGGTAAATATCTGTGGTGGTCTCTTGTGGGTCTTGGATTTCAACCCGAAGTCGCAGCATCATCAGGAGCCAGCAAAGCCAATGTTAAACACATCATTCTTGGACCCAATATGTTTGACAAACCAAACAAGGACGCATTCTACATAGTTACCAATTTCCTGTTAGAAAAACTCAACCCCGCACGCTTCCACGATGCATACAGGCATTGCTGGCCAGTGTTGGACCACAAAGCAGATGCCGAATTCCGTAAGGTGACCTGTGCTTGGCTGCGAGATCTAATGGATGAGCAGGGGAGCACAGTTCCCAAAGTGGTGGCGTCACTATTCCTCTCGCCTGGTGGACCCAAGTTCGTCAACCTTATGCTCCATCTAGCCAATCATGTCATGTTGCATGAGATGAAGACATTTTCAACAGATGGCACATGGGTCCCAGAGGCAGCGGCAGCCCCTGCCTCTTCTGTGGAAATGGCGCTGAAGCGGTTTCAGCTGGTCAAGACCAGATTCCTGAGAGGAGCTGTGGAACAGGACCTGATGCTGCAGGAGTACCAGAGACAGGCCCAGTCTCGAGTGAAGTCTTTGAGAGATTGGAGGGCTGAAGATGCAAAGTATGATGATTTGCATAAGCGTCACAAGAAAGTTGAACAGGAGGGAACCCCTCAAGCTGACAAGATTCAGAAGGTGCGCTCCTTGTGGTCATTCATGGACGGAGTGCTGTCCACCCTGGAGGAGGAGCGGCGGGTGGTGGAGAGTGTCATCAGGGGAGATGTGGACCAGTACACCATGGATGGGACGGACCTTGCCCTCAAAATCCCCCGGGTTCTGCTAGAGCAGATAGAGCAGTTATCCCACCTGTCGAGTGTGGGCAGTGTTTACGAGGCAGGCCAGCTGAACATCCTCTGTATGCTGGAGCTGCTCCACCAGGCTCTGGTCCTCCTAGGGGAGGAAAGGACCCGGGTGGCAGGACACACCCCCATTGCCCAGCTCCACCCTTTTCACCTGCAGGAGAGGAACCTACAGATGGCCCGTGCCATGGAGGATCTCCGAGTCATGAGGAAGAGGATTTCAAAGGAAGAAATTCCCGAGGTGAAGAGCCTCATCAGAAAGTTGGAGGCGGAGTGGGACCGGAAGTGGGCGGACTGTTTGAAACGCACGCCGCTGACCTCGTTCCTCAACAAGGATCCTgCCCTGGACTTTCTGTTCCCCATGGCTCCTCTGTCCTTTGAGCCGGCCACCGACGCCAGCTTCAAATCCAGCATCTTCTCTCAGTATCCGGCCAATCTACCCGAATTTCCTGAGGAGAAGCCTGTGGCGACTGACTCTGTTCCAATGGAGACCGTTACCACAATGGATTATACCCTCAAAAGCCTCTACCCTCCAGCTGTTGAGATGATTACATCTCTTCCTAGTGTGGCCATTTTCCCACTGACTCCCCTCCCTGCACTTTCTGAATCTCCTCTGGCTGTCCCTGCCAAAGCTCCCTCACCAAGCCACCTGCCGTTTGCGGAGGCTGTGACCCCCAGCCCTGGCAACATAAGTTTACGAGGACTTGAGCTGGGAGACATACTCGATACTCTTGGCGAAGACCCTTTCTCCACCAGGAAGCAGATTCCACGCACCCCAGAGAGTTTGAttTTGGATGTGAAGAGTTCCTGGCAAAGGGCGGTGGAGGAAGGGGAGGCTCAGAAGGCCTGCCTGTCTGCTACATTTGACTGCGACAACATCCGTGGGTGCCTCATGCCCCTCAGCGAGGTACATGAGGCCTCCCTTGGCCATGACTTTTCCTCCCTGAGCACAAGCCTGGATCCCACCAATGGGTGCAGTACTGCAGCCCCCCAGCAGGCTTCCCTCATGTCCACCCTGTCCTGGGACTCCTCCAACATGGAGGCCCTCAATAGCCTGAGCAACAACAACGTGGTCCAGTTCAGCATCAACCAAGAGGTGTTCCCTGAGCAGTACAGTATAGATCAGGAGACACTTCCCGAGCTGCCGGGCAACGACAGCAGCCTCCTGACCTCCATTAACTCCAGGGACATATCCAACACTGAGGAGGAAGAGCTGCTCCTCCCCCACATCCCCTATCTCCTCCCCACAGAGACTGAGCCAGCCCTGCTGGATGCACGCAGGCGTTTGGACAAGATCCAGCAGGCTTTTGGAGAGGCCTCCTTCATGGACCACCGCCAGGGGGTGCCAGAGCCCTCTCTCTCACAGCATGACAAGAGGACCCTGGACGCCAGAGACAGGCTGATGGCAGCAACACTGGAGACCTCAGCCACAGTGGAAGTGACGGACAAGGTCTTTTCCCTGGATCTGGACACTCTAGAGAGCCCCTCACCGCCAAGAACAGGGCAGTATAACCTCCCGCAACTGTTCACATTCTCCCCCATAGACGACCTGTAGTGTCTCCACATTATATATTTTCTGAGCAGTCTTCTAGTTTCTTACTTTTTCACAATTAAGGCTAACTCATTTCAATGCACATGCAATTAAAATATTTGTACATATGTGTGCCAATCTAACATGGTCTGAAACTAACATGgaaacaagttttttttaaattatttatgtCTAAGATGACATGATGGGTGagaataaacaaacatgaattGTATATTGTTAAATGAATTAAATTGTTACCAATGTCAA

Function

NR:

description
HAUS augmin-like complex subunit 6 isoform X2

GO:

id name namespace
GO:0051225 spindle assembly biological_process
GO:0070652 HAUS complex cellular_component

KEGG:

id description
K16589 HAUS6; HAUS augmin-like complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578127.2 False 3052 mRNA 0.51 16 50476029 50482772
XM_021578128.2 True 2965 mRNA 0.51 15 50476029 50482772

Neighbor

gene id symbol gene type direction distance location
LOC110500643 LOC106608644 coding downstream 3853 50413056 ~ 50472176 (-)
LOC110500881 LOC106608643 coding downstream 86575 50356174 ~ 50389454 (-)
LOC118942943 NA coding downstream 86968 50385962 ~ 50389061 (-)
LOC110500642 LOC106608642 coding downstream 134636 50338947 ~ 50341393 (-)
LOC110500880 LOC106608636 coding downstream 187759 50272053 ~ 50288270 (-)
LOC110500648 plin2 coding upstream 14293 50497065 ~ 50502262 (-)
larp7 larp7 coding upstream 25725 50508497 ~ 50518222 (-)
si:ch73-269m23.5 LOC106608694 coding upstream 48327 50531099 ~ 50533879 (-)
LOC110500654 LOC106608650 coding upstream 51233 50534005 ~ 50542563 (-)
LOC110500655 LOC106608652 coding upstream 59832 50542604 ~ 50552598 (-)
G1749098 NA non-coding downstream 24671 50449549 ~ 50451358 (-)
G1749064 NA non-coding downstream 71670 50360285 ~ 50404359 (-)
G1749013 NA non-coding downstream 120319 50353893 ~ 50355710 (-)
G1749004 NA non-coding downstream 204839 50270980 ~ 50271190 (-)
G1749149 NA non-coding upstream 103659 50586431 ~ 50586636 (-)
G1749154 LOC106608695 non-coding upstream 108791 50591563 ~ 50598287 (-)
G1749168 NA non-coding upstream 134555 50617327 ~ 50617528 (-)
G1749178 NA non-coding upstream 150230 50633002 ~ 50633320 (-)
G1749180 NA non-coding upstream 155588 50638360 ~ 50638869 (-)
G1747934 NA other downstream 887241 49587696 ~ 49588788 (-)
G1747906 LOC106608620 other downstream 890851 49459688 ~ 49585178 (-)
G1747908 LOC106608618 other downstream 961865 49512069 ~ 49514164 (-)
LOC110500619 LOC106608618 other downstream 974102 49493629 ~ 49502064 (-)
LOC110500878 LOC102779023 other downstream 1051699 49392218 ~ 49424330 (-)
G1749122 LOC106608652 other upstream 59663 50542435 ~ 50552525 (-)
LOC110500668 trmt44 other upstream 553931 51036609 ~ 51051426 (-)
G1750625 NA other upstream 754113 51236885 ~ 51237163 (-)
c21h11orf68 cssa07h11orf68 other upstream 1002928 51485700 ~ 51501323 (-)

Expression


Co-expression Network