LOC110500654 (LOC106608650)


Basic Information

Item Value
gene id LOC110500654
gene name LOC106608650
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50534005 ~ 50542563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958118.1
atatatatatatatatattttttttttacttggtcAATTTATGGGGGAagcttggcatccatgaatacacgtcACTGGCCTGAACGGGGCAGAGACAGCGCAGGAGTAAGGGAGGGGTTTGTGTCGTGGGGTCTGACTATCTTTGTCTGTCTGACTTGCTGTAATGATTTAATTAAACATGTCTGATTATGACTCAGTGTGTGTATTGTAAACCTTTATGCTATAGAGTAATctcctgtgtatgtgtgcacGTGGAGCCTGTTTGtgtgactggtgtgtgtgtaccctggTTCAGGTTTGTATACAGATGTTTGTTTATAAGCTCTGTCCTGTTAGGGAGAATGTTCTTAGAGGGAACAACAGGTTGTGTGCTTATCCGCTTCCAGGAAGATTAAAACAAGTTCCCTTTTCTGAAACCACTGCTCACACACATCCTGACATTAACACACACCCTTCTGCATAACTGACTAAAGTCTATCAGTGGTAAAGTATATGATTATATGTTTATGTATTGCATGCTATGAATAGGTTATATAATTATATTGGAGGAAGGGGGCAGAGGGGTCAGGTGGTAATTAAGGGCAACAACCCCTGAACCTCAGCTGTAAAGGGACGTTAATTATTAATGCACGCATATTGGGGGGGATTTCCACTAGTTACAACAGCTACAAAGTAAAagttggctatattgtaaaactTAATGGGGAAAAAATAGCTTTCTGCTCTTAATTTATAGTTAGGCATAAGGTCAGCAGTAGTGTGGGTAGGATTAGGGTTACAATCTTTAAAGAGAAATGGtcgaaataggcggggtttatgactttgtggctgtgctaacTATAGTGGCGACCAGTGGATGAGAGAGCCACAGCCTGATTTGGCACAGACAGGACGTAGGCTGTATGTGTTTGTACCCCATTTACAGAACTGGGAGGTTGAGTGCTCCTGTCAACGAGTGAAAACTGCGCTTGCATCGGGCGCTGTGAAAATGGCGGATGACTGCGCTAGGCTCAGTACAATAATTGGTCAATGTTCGCACGGCAGACTTTGCCCGGTGAGGGAGTGTTGTGTTTACGGAAATCCAGTAATGTGGCGCGAGCAGCTGTCAAGCAAAACTAGTAGCGGAACGGGGGCTCCTCGGGCTGTCAAGCGAGTCGACCGCTGGAGCGCGCAAGGGCTATAGCCCAGACCCACAttgatactactgctgctgccatgGAGAGGAAACAGCATCCAGTTGGAGAAGTCCTCATCATTCCAATGAGACCTTCAACATCACTTTCGCCCCAGGATTCAGCTCGAcaccttccccttccccttcagccctcctcccctcctccacccctctctctgtccagtccCCAGCTCCAGGCTGAGTTTCTGAGAAGAGCTCCCAGAGCTGCTTCCCCTGACAACGACTCGGCTAGACACCAAAACCTTCTCCAccaaccctctccctctgtctcccccttcccctcccctcctccacccctctctctggccAGTCCCCAGCTCCAGGCTGAGTTTCTGAGAAGAGCTCCCAGAGCTGCTTCCCCTGACAACGACTCGGCTAGACACCAAAACCTTCTCCAccaaccctctccctctgtgtcctcccctcctccccctctttcctcccctcctccacccctctctctgtccagtccACAGCTCCAGGCTGAGTTTCTGAGAAGAGCTCCCAGAGCTGCTTCCCCTGACAACGACTCGGCTAGACACCAAAACCTTCTCCAccaaccctctccctctgtctccccctcctccacccctcctccacccctctctctggccAGTCCCCAGCTCCAGGCTGAGTTTCTGAGAAGAGCTCCCAGAGCTGCTTCCCCTGACAACGACTCGGCTAGACACCAAAACCTTCTCCAccaaccctctccctctgtgtcctcccctcctccccctctttcctcccctcctccacccctctctctgtccagtccCCAGCTCCAGGCTGAGTTTCTGAGAAGAGCTCCCAGAGCTGCTTCCCCCGACAACGATTCGGCTAGATTCAAAAACCTTCCCCAccaaccctctccctctgtctccccctctgtgtccctcttctcctcccctcctacccctctttcctcccctcctccacctctttcctcccctcctccacccctctccttgtCCAGTCCCCAGCTCCAGGCTGAGTTTCTGAGGAGAGCAAGCCGTGGTCTGAGAACTGTCTCCTGTGACACCAGCGATGTCCTCACCTCCCCCAGCTCCACCCTGGTCTCCCCCTTTACctccatcaccacctccacccTTACCTCCCCCCCACAGCCCCTGTCCTCCTCCATGCCCACTAAAGAGGgttgcactactctcctgtctctctccagtcctGAGCTGCTAACTGAGCTGTGTCAATCTCAGTCCCGTCCTATGAAGCACGTCTCTGTCTCTAAAGGACTCACCACTGTCTTCTCTGGACGGGGCAGAGGCATAacgAATCCTAGCCCTGCCACTGCCTCAGGAGCAGCCAACCAGACACTCCGCTCAGACTCCATGGCCAATAGGAGAGGACAGGCAGGTCCCAGGCTGTCTAATGGGACAAAGCGTTAGACTAAGCTAAAGTGCCCCTGATGACCCCAGCTACTGTATAATGTAATTGAAATGAATGAAAACCAGCAGTCCTGTGGCCCTCCGGGGCCTGGAGTTGAGAACTGAATGACACATTATCAAACACTATCTATACTGCCATGTGCCATTGCCAACACACTAACATCAGACATAATGCCAACCCACCGacagacttacacacacacactgtaatacacccacacacacactgtacctctTCATGTAAGACATGGAAAGCAATGTGGTGAGGTGAAGCAGGTCTCtctctgtaaaaaaataaattatcAAATGTATCACAA
>XM_036958119.1
atatatatatatatatattttttttttacttggtcAATTTATGGGGGAagcttggcatccatgaatacacgtcACTGGCCTGAACGGGGCAGAGACAGCGCAGGAGTAAGGGAGGGGTTTGTGTCGTGGGGTCTGACTATCTTTGTCTGTCTGACTTGCTGTAATGATTTAATTAAACATGTCTGATTATGACTCAGTGTGTGTATTGTAAACCTTTATGCTATAGAGTAATctcctgtgtatgtgtgcacGTGGAGCCTGTTTGtgtgactggtgtgtgtgtaccctggTTCAGGTTTGTATACAGATGTTTGTTTATAAGCTCTGTCCTGTTAGGGAGAATGTTCTTAGAGGGAACAACAGGTTGTGTGCTTATCCGCTTCCAGGAAGATTAAAACAAGTTCCCTTTTCTGAAACCACTGCTCACACACATCCTGACATTAACACACACCCTTCTGCATAACTGACTAAAGTCTATCAGTGGTAAAGTATATGATTATATGTTTATGTATTGCATGCTATGAATAGGTTATATAATTATATTGGAGGAAGGGGGCAGAGGGGTCAGGTGGTAATTAAGGGCAACAACCCCTGAACCTCAGCTGTAAAGGGACGTTAATTATTAATGCACGCATATTGGGGGGGATTTCCACTAGTTACAACAGCTACAAAGTAAAagttggctatattgtaaaactTAATGGGGAAAAAATAGCTTTCTGCTCTTAATTTATAGTTAGGCATAAGGTCAGCAGTAGTGTGGGTAGGATTAGGGTTACAATCTTTAAAGAGAAATGGtcgaaataggcggggtttatgactttgtggctgtgctaacTATAGTGGCGACCAGTGGATGAGAGAGCCACAGCCTGATTTGGCACAGACAGGACGTAGGCTGTATGTGTTTGTACCCCATTTACAGAACTGGGAGGTTGAGTGCTCCTGTCAACGAGTGAAAACTGCGCTTGCATCGGGCGCTGTGAAAATGGCGGATGACTGCGCTAGGCTCAGTACAATAATTGGTCAATGTTCGCACGGCAGACTTTGCCCGGTGAGGGAGTGTTGTGTTTACGGAAATCCAGTAATGTGGCGCGAGCAGCTGTCAAGCAAAACTAGTAGCGGAACGGGGGCTCCTCGGGCTGTCAAGCGAGTCGACCGCTGGAGCGCGCAAGGGCTATAGCCCAGACCCACAttgatactactgctgctgccatgGAGAGGAAACAGCATCCAGTTGGAGAAGTCCTCATCATTCCAATGAGACCTTCAACATCACTTTCGCCCCAGGATTCAGCTCGAcaccttccccttccccttcagccctcctcccctcctccacccctctctctgtccagtccCCAGCTCCAGGCTGAGTTTCTGAGAAGAGCTCCCAGAGCTGCTTCCCCTGACAACGACTCGGCTAGACACCAAAACCTTCTCCAccaaccctctccctctgtgtcctcccctcctccccctctttcctcccctcctccacccctctctctgtccagtccACAGCTCCAGGCTGAGTTTCTGAGAAGAGCTCCCAGAGCTGCTTCCCCTGACAACGACTCGGCTAGACACCAAAACCTTCTCCAccaaccctctccctctgtctccccctcctccacccctcctccacccctctctctggccAGTCCCCAGCTCCAGGCTGAGTTTCTGAGAAGAGCTCCCAGAGCTGCTTCCCCTGACAACGACTCGGCTAGACACCAAAACCTTCTCCAccaaccctctccctctgtgtcctcccctcctccccctctttcctcccctcctccacccctctctctgtccagtccCCAGCTCCAGGCTGAGTTTCTGAGAAGAGCTCCCAGAGCTGCTTCCCCCGACAACGATTCGGCTAGATTCAAAAACCTTCCCCAccaaccctctccctctgtctccccctctgtgtccctcttctcctcccctcctacccctctttcctcccctcctccacctctttcctcccctcctccacccctctccttgtCCAGTCCCCAGCTCCAGGCTGAGTTTCTGAGGAGAGCAAGCCGTGGTCTGAGAACTGTCTCCTGTGACACCAGCGATGTCCTCACCTCCCCCAGCTCCACCCTGGTCTCCCCCTTTACctccatcaccacctccacccTTACCTCCCCCCCACAGCCCCTGTCCTCCTCCATGCCCACTAAAGAGGgttgcactactctcctgtctctctccagtcctGAGCTGCTAACTGAGCTGTGTCAATCTCAGTCCCGTCCTATGAAGCACGTCTCTGTCTCTAAAGGACTCACCACTGTCTTCTCTGGACGGGGCAGAGGCATAacgAATCCTAGCCCTGCCACTGCCTCAGGAGCAGCCAACCAGACACTCCGCTCAGACTCCATGGCCAATAGGAGAGGACAGGCAGGTCCCAGGCTGTCTAATGGGACAAAGCGTTAGACTAAGCTAAAGTGCCCCTGATGACCCCAGCTACTGTATAATGTAATTGAAATGAATGAAAACCAGCAGTCCTGTGGCCCTCCGGGGCCTGGAGTTGAGAACTGAATGACACATTATCAAACACTATCTATACTGCCATGTGCCATTGCCAACACACTAACATCAGACATAATGCCAACCCACCGacagacttacacacacacactgtaatacacccacacacacactgtacctctTCATGTAAGACATGGAAAGCAATGTGGTGAGGTGAAGCAGGTCTCtctctgtaaaaaaataaattatcAAATGTATCACAA
>TU2002718
TTGTGTTTACGGAAATCCAGTAATGTGGCGCGAGCAGCTGTCAAGCAAAACTAGTAGCGGAACGGGGGCTCCTCGGGCTGTCAAGCGAGTCGACCGCTGGAGCGCGCAAGGGCTATAGCCCAGACCCACAttgatactactgctgctgccatgGAGAGGAAACAGTCCCCAGCTCCAGGCTGAGTTTCTGAGGAGAGCAAGCCGTGGTCTGAGAACTGTCTCCTGTGACACCAGCGATGTCCTCACCTCCCCCAGCTCCACCCTGGTCTCCCCCTTTACctccatcaccacctccacccTTACCTCCCCCCCACAGCCCCTGTCCTCCTCCATGCCCACTAAAGAGGgttgcactactctcctgtctctctccagtcctGAGCTGCTAACTGAGCTGTGTCAATCTCAGTCCCGTCCTATGAAGCACGTCTCTGTCTCTAAAGGACTCACCACTGTCTTCTCTGGACGGGGCAGAGGCATAacgAATCCTAGCCCTGCCACTGCCTCAGGAGCAGCCAACCAGACACTCCGCTCAGACTCCATGGCCAATAGGAGAGGACAGGCAGGTCCCAGGCTGTCTAATGGGACAAAGCGTTAGACTAAGCTAAAGTGCCCCTGATGACCCCAGCTACTGTATAATGTAATTGAAATGAATGAAAACCAGCAGTCCTGTGGCCCTCCGGGGCCTGGAGTTGAGAACTGAATGACACATTATCAAACACTATCTATACTGCCATGTGCCATTGCCAACACACTAACATCAGACATAATGCCAACCCACCGacagacttacacacacacactgtaatacacccacacacacactgtacctctTCATGTAAGACATGGAAAGCAATGTGGTGAGGTGAAGCAGGTCTCtctctgtaaaaaaataaattatcAAATGTATCACAA
>TU2002719
CAGCCTGATTTGGCACAGACAGGACGTAGGCTGTATGTGTTTGTACCCCATTTACAGAACTGGGAGGTTGAGTGCTCCTGTCAACGAGTGAAAACTGCGCTTGCATCGGGCGCTGTGAAAATGGCGGATGACTGCGCTAGGCTCAGTACAATAATTGGTCAATGTTCGCACGGCAGACTTTGCCCGGTGAGGGAGTGTTGTGTTTACGGAAATCCAGTAATGTGGCGCGAGCAGCTGTCAAGCAAAACTAGTAGCGGAACGGGGGCTCCTCGGGCTGTCAAGCGAGTCGACCGCTGGAGCGCGCAAGGGCTATAGCCCAGACCCACAttgatactactgctgctgccatgGAGAGGAAACAGTCCCCAGCTCCAGGCTGAGTTTCTGAGGAGAGCAAGCCGTGGTCTGAGAACTGTCTCCTGTGACACCAGCGATGTCCTCACCTCCCCCAGCTCCACCCTGGTCTCCCCCTTTACctccatcaccacctccacccTTACCTCCCCCCCACAGCCCCTGTCCTCCTCCATGCCCACTAAAGAGGgttgcactactctcctgtctctctccagtcctGAGCTGCTAACTGAGCTGTGTCAATCTCAGTCCCGTCCTATGAAGCACGTCTCTGTCTCTAAAGGACTCACCACTGTCTTCTCTGGACGGGGCAGAGGCATAacgAATCCTAGCCCTGCCACTGCCTCAGGAGCAGCCAACCAGACACTCCGCTCAGACTCCATGGCCAATAGGAGAGGACAGGCAGGTCCCAGGCTGTCTAATGGGACAAAGCGTTAGACTAAGCTAAAGTGCCCCTGATGACCCCAGCTACTGTATAATGTAATTGAAATGAATGAAAACCAGCAGTCCTGTGGCCCTCCGGGGCCTGGAGTTGAGAACTGAATGACACATTATCAAACACTATCTATACTGCCATGTGCCATTGCCAACACACTAACATCAGACATAATGCCAACCCACCGacagacttacacacacacactgtaatacacccacacacacactgtacctctTCATGTAAGACATGGAAAGCAATGTGGTGAGGTGAAGCAGGTCTCtctctgtaaaaaaataaattatcAAATGTATCACAA

Function

NR:

description
PREDICTED: proline-rich protein 36-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958118.1 False 2921 mRNA 0.51 5 50534005 50542563
XM_036958119.1 False 2774 mRNA 0.51 6 50534005 50542563
TU2002718 False 915 TUCP 0.52 5 50534005 50541498
TU2002719 True 1112 TUCP 0.53 5 50534005 50541695

Neighbor

gene id symbol gene type direction distance location
si:ch73-269m23.5 LOC106608694 coding downstream 126 50531099 ~ 50533879 (-)
larp7 larp7 coding downstream 15783 50508497 ~ 50518222 (-)
LOC110500648 plin2 coding downstream 31743 50497065 ~ 50502262 (-)
LOC110500644 fa29a coding downstream 51233 50476029 ~ 50482772 (-)
LOC118943015 NA coding downstream 55268 50478607 ~ 50478737 (-)
LOC110500655 LOC106608652 coding upstream 41 50542604 ~ 50552598 (-)
LOC110500944 NA coding upstream 409469 50952032 ~ 50978597 (-)
LOC110500666 LOC106608661 coding upstream 439683 50982246 ~ 50992851 (-)
LOC110500667 LOC106608662 coding upstream 453798 50996361 ~ 51002663 (-)
LOC110500668 trmt44 coding upstream 494046 51036609 ~ 51051426 (-)
G1749098 NA non-coding downstream 82647 50449549 ~ 50451358 (-)
G1749064 NA non-coding downstream 129646 50360285 ~ 50404359 (-)
G1749013 NA non-coding downstream 178295 50353893 ~ 50355710 (-)
LOC110500880 LOC106608636 non-coding downstream 247663 50272053 ~ 50288270 (-)
G1749004 NA non-coding downstream 262815 50270980 ~ 50271190 (-)
G1749149 NA non-coding upstream 43868 50586431 ~ 50586636 (-)
G1749154 LOC106608695 non-coding upstream 49000 50591563 ~ 50598287 (-)
G1749168 NA non-coding upstream 74764 50617327 ~ 50617528 (-)
G1749178 NA non-coding upstream 90439 50633002 ~ 50633320 (-)
G1749180 NA non-coding upstream 95797 50638360 ~ 50638869 (-)
G1747934 NA other downstream 945217 49587696 ~ 49588788 (-)
G1747906 LOC106608620 other downstream 948827 49459688 ~ 49585178 (-)
G1747908 LOC106608618 other downstream 1019841 49512069 ~ 49514164 (-)
LOC110500619 LOC106608618 other downstream 1032078 49493629 ~ 49502064 (-)
LOC110500878 LOC102779023 other downstream 1109675 49392218 ~ 49424330 (-)
G1750625 NA other upstream 694322 51236885 ~ 51237163 (-)
c21h11orf68 cssa07h11orf68 other upstream 943137 51485700 ~ 51501323 (-)
G1751128 NA other upstream 1585435 52127998 ~ 52128318 (-)
LOC110500888 peli3 other upstream 2832106 53370137 ~ 53405755 (-)
G1749122 LOC106608652 other upstream 740 50542435 ~ 50552525 (-)

Expression


Co-expression Network