LOC110500668 (trmt44)


Basic Information

Item Value
gene id LOC110500668
gene name trmt44
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51036609 ~ 51051426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470144.2
TATAAGTCGCCGGAAGTGTTATTTTTTGTTATTACGTTTGCAATGTATAATGTTTCAGTGCTATGCAATTTGCTATTATATCTAAACCATGTTGAAACTAAGTTTACAGACAAATGTAATACTCTTCCGGGAGGATTTTGGTCTGGCGTTAATGTTTAGATAAATAAACCACACGTTGTGAACAAATGTCTTTGTGGACGTCATGGATGTGATACGTCAGAGTCCAAGGATGTTCTTTCTTTAGTGAATAGTTGTATTGAACTTGAATATGACAAGCAGAGACTGGTATTTTTCTGTGAGGACATTCATTCCTAAAGTAAACTTATGGAACAACAGTACATAAAGACATACTCAAAAACTTTGAATCTCAAAGAGTAAAGTAAGCTTCATACCAGTTGAGGAGAGTGCGGAAGGTACTGCGTTTCGAAGGAAGAACATCTATCAGATACACCTTCTGCCTGAGAACAATGATGAATGGTCCTATGGGGCGAGGAGCTAGCAGAGAAGGGTCTGACGGTCAAACAGTCCTTTGTGGATCTTGGTTATGGAAATGGTCTATCACCCTGGAAAGGGCATCGATGTGAGGAAACAGAAGATCTGGAATATGTACGGCCCATGAACCTATCTAGAGGAAATGGCAATCACTCCCAGTGATGGCTTCTTATTCCTGGACACAGACTGGCTGATTGGAAACTACTCGGAGGAGCTCTTGCCGTGGATCCCCGTTATAGCAGCCAGGCAAGTCATCAGCAGACACAATTTGGCTTAGCCGCATCAAGTGGCAGCTGATCTATTGAATTTGAAATCATGTTACTTTCATGAGTTGGGTTGGTTTGGGGAGAGGGGGATTGGAGGTGTGTTGATGTGTGAAGGGACTTGTTTGATGCGGTGGCCATCTGATGGCGATGTTGAGCTTGGCTCTTGAAGTTAGTCTCTGAAAGCTCCCAACAGTACTTAACGATGCCTCATAGCTCCATAGGCTTTAAATTGTCCTCATTTTTCTTACATCCAACTTTGAGTAAGTTGTGCCTAATTCAGTTGTTCCTACAGTATGTTCTCACCTCTATGATGTCTGCTACCTCTGCTTGGCCAGGGTTCTCTAAGACTAAACCAGGGAAATAAagaatagttttgatgtcatttCTGTCACTTTCCTCACCTTAGGTCATCCTTCTCCGGCCGGTACATTGTTCTGCCGTTTCTTTGACTTCTATGGGAAGTACCAGCGGAGACAGTTTCAGAAGTCCCAGTATAAGGAATACATTGACTTCATCTCTGAGATCAGCACAGCCTGTGGCTTCAACACAGAGGAGGACTGCCTGAGAATCCCCTCCACAAAGCGGATATCCTaatggagcggcagGTGTGTCTGGTAGACTTGGTGCTACCAGTCAAGGAGCTACCAGCTGTCAGACGAGTGGAGAGCCAAGTATATACAGGGTCGTCAGACCTGGTCCGGGGTCACAGTACAAGGGTCAAACGTCGAGGGGGAAGCTGAGACTGACAGGTCCCATGGGAACAACTGGGGAGCTGGGTTCCAGCCCCGAGAGAGGATTGAGACTGTGGAATTGCGCCGCCCTCCCCCGGGATTTTGTAGATGCCCCAGCCCCAGTATAGTCTTACGTGTGGCCAACACTCTGCTTGGTCGACCGACAAGGGCGGGGATGTCCCTGATGCCTGGAGCACTGGAGtaaAGGCGGTATGTTCCATATCCGGAACTGGCGGGTACAGACCCAGAATGCTGAAAGGTACCAGGGCTGATGCTAAACTGAAGCCCCTACTCTCTGGTGTCCTGAAAATCCGGGCCTGCTGGTTCCATGCCCCTCACCCCAACGGATGCCCCCTGCCGGCCGAGGAGTGTGACTTTGCCCGTTGAGCCGACGACCATCAACCTTCCACCAGACTACTCAAGAAAATGAAGAACTCAAATTAAACGCACGATTCAGTTTAGACCGttgctttatttttatttgacttgTTTTTatgatatgacagcttgttacacaaaagatatgacagcttgttacacaaaagaaaaggggctaggcttgagtgaaagagcgggaagactgaggaac
>XR_005038630.1
TATAAGTCGCCGGAAGTGTTATTTTTTGTTATTACGTTTGCAATGTATAATGTTTCAGTGCTATGCAATTTGCTATTATATCTAAACCATGTTGAAACTAAGTTTACAGACAAATGTAATACTCTTCCGGGAGGATTTTGGTCTGGCGTTAATGTTTAGATAAATAAACCACACGTTGTGAACAAATGTCTTTGTGGACGTCATGGATGTGATACGTCAGAGTCCAAGGATGTTCTTTCTTTAGTGAATAGTTGTATTGAACTTGAATATGACAAGCAGAGACTGGTATTTTTCTGTGAGGACATTCATTCCTAAAGTAAACTTATGGAACAACAGTACATAAAGACATACTCAAAAACTTTGAATCTCAAAGAGTAAAGTAAGCTTCATACCAGTTGAGGAGAGTGCGGAAGGTACTGCGTTTCGAAGGAAGAACATCTATCAGATACACCTTCTGCCTGAGAACAATGATGAATGGTCCTATGGGGCGAGGAGCTAGCAGAGAAGGGTCTGACGGTCAAACAGTCCTTTGTGGATCTTGGTTATGGAAATGGTCTATCACCCTGGAAAGGGCATCGATGTGAGGAAACAGAAGATCTGGAATATGTACGGCCCATGAACCTATCTAGAGGAAATGGCAATCACTCCCAGTGATGGCTTCTTATTCCTGGACACAGACTGGCTGATTGGAAACTACTCGGAGGAGCTCTTGCCGTGGATCCCCGTTATAGCAGCCAGGCAAGTCATCAGCAGACACAATTTGGCTTAGCCGCATCAAGTGGCAGCTGATCTATTGAATTTGAAATCATGTTACTTTCATGAGTTGGGTTGGTTTGGGGAGAGGGGGATTGGAGGTGTGTTGATGTGTGAAGGGACTTGTTTGATGCGGTGGCCATCTGATGGCGATGTTGAGCTTGGCTCTTGAAGTTAGTCTCTGAAAGCTCCCAACAGTACTTAACGATGCCTCATAGCTCCATAGGCTTTAAATTGTCCTCATTTTTCTTACATCCAACTTTGAGTAAGTTGTGCCTAATTCAGTTGTTCCTACAGTATGTTCTCACCTCTATGATGTCTGCTACCTCTGCTTGGCCAGGGTTCTCTAAGACTAAACCAGGGAAATAAagaatagttttgatgtcatttCTGTCACTTTCCTCACCTTAGGTCATCCTTCTCCGGCCGGTACATTGTTCTGCCGTTTCTTTGACTTCTATGGGAAGTACCAGCGGAGACAGTTTCAGAAGTCCCAGTATAAGGAATACATTGACTTCATCTCTGAGATCAGCACAGCCTGTGGCTTCAACACAGAGGAGGACTGCCTGAGAATCCCCTCCACAAAGCGGATATCCTaatggagcggcagGTGTGTCTGGTAGACTTGGTGCTACCAGTCAAGGAGCTACCAGCTGTCAGACGAGTGGAGAGCCAAGTATATACAGGGTCGTCAGACCTGGTCCGGGGTCACAGTACAAGGGTCAAACGTCGAGGGGGAAGCTGAGACTGACAGGTCCCATGGGAACAACTGGGGAGCTGGGTTCCAGCCCCGAGAGAGGATTGAGACTGTGGAATTGCGCCGCCCTCCCCCGGGATTTTGTAGATGCCCCAGCCCCAGTATAGTCTTACGTGTGGCCAACACTCTGCTTGGTCGACCGACAAGGGCGGGGATGTCCCTGATGCCTGGAGCACTGGAGgCAGTCTGTCAGGGAGAGAGGTGTTGGAGTAGGAAACTCTACAGGTCTTAAAGAAGGAGTGTGGAGGTCTGTACACCTGCTCAAGAACAACCACCAGGTCTTCAGCGtaaAGGCGGTATGTTCCATATCCGGAACTGGCGGGTACAGACCCAGAATGCTGAAAGGTACCAGGGCTGATGCTAAACTGAAGCCCCTACTCTCTGGTGTCCTGAAAATCCGGGCCTGCTGGTTCCATGCCCCTCACCCCAACGGATGCCCCCTGCCGGCCGAGGAGTGTGACTTTGCCCGTTGAGCCGACGACCATCAACCTTCCACCAGACTACTCAAGAAAATGAAGAACTCAAATTAAACGCACGATTCAGTTTAGACCGttgctttatttttatttgacttgTTTTTatgatatgacagcttgttacacaaaagatatgacagcttgttacacaaaagaaaaggggctaggcttgagtgaaagagcgggaagactgaggaac
>TU2004288
TGATTTAACGTCTAATCAAAACGCTGGATAGCCGTGATTGAAATGACACACTGGGGGTAGGTGAATAGTGTCTTTGTGTACCCAACGTTCAGTTCTGCCCGCTGATGAAGTGATTAGGGACTGACTGACCGTCATACCTGCTTGTGTTTCAGCACCCTGGAAAGGGCATCGATGTGAGGAAACAGAAGATCTGGAATATGTACGGCCCATGAACCTATCTAGAGGAAATGGCAATCACTCCCAGTGATGGCTTCTTATTCCTGGACACAGACTGGCTGATTGGAAACTACTCGGAGGAGCTCTTGCCGTGGATCCCCGTTATAGCAGCCAGGTCATCCTTCTCCGGCCGGTACATTGTTCTGCCGTTTCTTTGACTTCTATGGGAAGTACCAGCGGAGACAGTTTCAGAAGTCCCAGTATAAGGAATACATTGACTTCATCTCTGAGATCAGCACAGCCTGTGGCTTCAACACAGAGGAGGACTGCCTGAGAATCCCCTCCACAAAGCGGATATCCTaatggagcggcagGTGTGTCTGGTAGACTTGGTGCTACCAGTCAAGGAGCTACCAGCTGTCAGACGAGTGGAGAGCCAAGTATATACAGGGTCGTCAGACCTGGTCCGGGGTCACAGTACAAGGGTCAAACGTCGAGGGGGAAGCTGAGACTGACAGGTCCCATGGGAACAACTGGGGAGCTGGGTTCCAGCCCCGAGAGAGGATTGAGACTGTGGAATTGCGCCGCCCTCCCCCGGGATTTTGTAGATGCCCCAGCCCCAGTATAGTCTTACGTGTGGCCAACACTCTGCTTGGTCGACCGACAAGGGCGGGGATGTCCCTGATGCCTGGAGCACTGGAGtaaAGGCGGTATGTTCCATATCCGGAACTGGCGGGTACAGACCCAGAATGCTGAAAGGTACCAGGGCTGATGCTAAACTGAAGCCCCTACTCTCTGGTGTCCTGAAAATCCGGGCCTGCTGGTTCCATGCCCCTCACCCCAACGGATGCCCCCTGCCGGCCGAGGAGTGTGACTTTGCCCGTTGAGCCGACGACCATCAACCTTCCACCAGACTACTCAAGAAAATGAAGAACTCAAATTAAACGCACGATTCAGTTTAGACCGttgctttatttttatttgacttgTTTTTa

Function

symbol description
trmt44 Predicted to enable tRNA (uracil) methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to be located in cytoplasm. Orthologous to human TRMT44 (tRNA methyltransferase 44 homolog).

NR:

description
PREDICTED: probable tRNA (uracil-O(2)-)-methyltransferase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470144.2 False 2078 mRNA 0.47 7 51036609 51051426
XR_005038630.1 False 2185 mRNA 0.47 8 51036609 51051426
TU2004288 True 1151 TUCP 0.52 5 51036703 51049088

Neighbor

gene id symbol gene type direction distance location
LOC110500667 LOC106608662 coding downstream 33946 50996361 ~ 51002663 (-)
LOC110500666 LOC106608661 coding downstream 43758 50982246 ~ 50992851 (-)
LOC110500944 NA coding downstream 58221 50952032 ~ 50978597 (-)
LOC110500655 LOC106608652 coding downstream 484011 50542604 ~ 50552598 (-)
LOC110500654 LOC106608650 coding downstream 494046 50534005 ~ 50542563 (-)
LOC110500670 LOC106608666 coding upstream 17950 51069376 ~ 51084011 (-)
LOC110500671 LOC106608667 coding upstream 50278 51101704 ~ 51107102 (-)
LOC110500676 LOC106608670 coding upstream 103649 51155075 ~ 51164892 (-)
LOC110500678 LOC100136540 coding upstream 122771 51174197 ~ 51194362 (-)
LOC110500682 LOC106608697 coding upstream 190491 51241917 ~ 51253776 (-)
G1750434 NA non-coding downstream 36037 50941354 ~ 51000572 (-)
G1750325 NA non-coding downstream 124165 50825812 ~ 50912444 (-)
G1750337 NA non-coding downstream 241921 50793965 ~ 50794688 (-)
G1749268 NA non-coding downstream 260083 50776257 ~ 50776526 (-)
G1750505 NA non-coding upstream 1983 51053409 ~ 51053708 (-)
G1750534 NA non-coding upstream 7509 51058935 ~ 51059208 (-)
G1750535 NA non-coding upstream 8821 51060247 ~ 51060483 (-)
G1750536 NA non-coding upstream 9347 51060773 ~ 51062068 (-)
G1750539 LOC106608664 non-coding upstream 13702 51065128 ~ 51065828 (-)
G1749122 LOC106608652 other downstream 484084 50542435 ~ 50552525 (-)
G1747934 NA other downstream 1447821 49587696 ~ 49588788 (-)
G1747908 LOC106608618 other downstream 1522445 49512069 ~ 49514164 (-)
LOC110500619 LOC106608618 other downstream 1534682 49493629 ~ 49502064 (-)
G1750625 NA other upstream 185459 51236885 ~ 51237163 (-)
c21h11orf68 cssa07h11orf68 other upstream 434274 51485700 ~ 51501323 (-)
G1751128 NA other upstream 1076572 52127998 ~ 52128318 (-)
LOC110500888 peli3 other upstream 2323243 53370137 ~ 53405755 (-)
G1752268 NA other upstream 2366974 53418400 ~ 53419325 (-)
G1747906 LOC106608620 other downstream 1451525 49459688 ~ 49585178 (-)

Expression


Co-expression Network