LOC110500691 (LOC106608684)


Basic Information

Item Value
gene id LOC110500691
gene name LOC106608684
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51457228 ~ 51485888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578194.2
ATTTCCGCCCCATTTTACAGGGTGGTGGCAAGTTGCATTGGAGACTTCAAGGCGGAGGTGGCTAAGAGCGATCTGTCACGACAAGTTTACAAATTTACCTGTTTTCAAGGGACAAACACCCTAGGGGAAAGGCTATTCCAATAACCAACGTGGCAGAAGTAGAATTCGGAAATGGATGGAATGTATGGATGGGGACAGCCCCCTTTGAACCAAGggaaTTCTTTCATAGAGATCATTGAGCAGCCCAAGCCGAGAGGCATGAGGTTCAGGTACAAGTGTGAGGGGCGCTCGGCGGGCAGCATCCCGGGAGAGAAGAGCAACGATACCACCAAGACACACCCCGCCATCAAGGTGCACAACTACAATGGTCCCCTGCGTGTCCGTGTCTCcttggtgaccaagaacccgccTCACAAGCCCCACCCGCACGAGCTGGTGGGGAAAGACTGCAAACATGGCTACTATGAGGCAGACTTGCAGGAGAGACGAGTACACAGgtcagactgtgtTTTTCAGAACCTGGGCATTCAGTGTGTGAAGAAAAAGGATGTGAACGAAGCAGTTTCCTGTAGACTGCAGACCCAAAACAACCCTTTCAACATTCCCGAGGCGAAGGTGTGGGAGGAGGAGTTTGACCTGAATGCAGTGAGGCTTTGTTTCCAGGCCTCGATCACTCTACCTACCGGTGAACTTCACCCTCTGGAGCCCGTGGTGTCTCAGCCCATCTACGACAATAgagCACCCAACACAGCAGAATTGAAGATCTGTCGAGTGAACAGAAACTCTGGGAGCTGCAGAGGAGGGGACGAGATATTCTTACTCTGTGACAAAGTGCAAAAAGAGGACATCGAGGTACGGTTCTTCCAGGACTCGTGGGAGGGGAAGGGCACCTTCTCCCAGGCGGACGTCCACAGGCAGGTGGCCATCGTGTTCCGTACCCCGCCCTTCTACGACACCAACTTGACCGAGCCAATCAAAGTGAAGATGCAGCTTCGCAGGCCCTCGGACCGCGAGGTCAGCGAGCCAATGGACTTCCAATTCCTGCCCTCCGACCCAGATGAATATAGACTGATAGAGAAGCGAAAACGGACAGAGGGAATGTTCCAGAATCTGAAGCTGGGGTCCATATCAGGGGCCATGCCAGCAGAGAGGCCTTTCAACACTGCCAGAAGAACAGTCGCCACCAAGCCAGCAGCTAGCCAGCCTGTGAACCTAGTGGCGCCCCCTCGTGCCGCCTCTGTGAAGCCCCAGCCCTACTATGATAGCCCCCAGCCTGGCCAGCTGTTCCGAACCCAGCCCAAAGCagagccctcctcctccactccagcAGAGACCTGGAAGTTCCTCAACAGCCTGACCTTGGACTCCCAACACAAAGCCACCCCCGTGGCCCAATTCACCAACCCCCAGGCATCTGCAGCCACCTCACAGGCCTTCCCCACCGTCAACCTGTCGGACCTTCACGGCTTCACCTTCTCCACCTTCGCTAGTCCCCAGGAGCCAGTTGGCGCAGCCGCTACCCCAGAGCCCACCTCTACCTACGGGGTCCAGGATTCCCAGTTCAGGGTGGATGGCCCCATGGTGGATGAGGAGCTACCCGAGTTCCCCAGCTTCTCTGAGGTCCACCAGTCAGGGACACTAGATAACATAAACATCGACGACTTCCAGGCTATGCTGGTCCAGAGTGGTCTGGCTGGAGAGGGGCCAGGGAACAGTAGGGTGTCGGTCGCTCAGGCACCCTGCCACTTACCTGCCACCAACCCTGTGGTCAACAACAGCTGTGGCGGCAGCACCTGGATGAACTACCCCAACAGCATCgtgaacctgctccagagtgagGGCATGATCGACAGTTCTCCTGGCAACTCCAGCCAGCCGGCCGTCCTCGACGACCTGGACGTCTTCAGCTCCATGGACGAAGACCGTCTCATTTCCATCCTGAACAGTGGCAACCAGGCCGGTTTCGTGTCCGGACATCAGACTTAGAGACCGCTCTGATTTTACAGATATTTTTACTGCAATACTACATTTCTGTAGACCCAGCTCCCTTCCAACCAAACTTCCCTTGTACTTGTTATTCTAATGGACTACAAAGAAAATACATTTGGCTGGCTGATCGAGAATCAGATGGTGCTGTTTGCGCTCTTCTCTATGTGGATTGTGGACATGTTAATTGGGACAGCTGCAGAACCCTACCTGTACTCGATGAACAGAGTGAATATGAGAGAGGGCTACAGGGAACCCCTGGTAACTGCCAGTTTGTGGGCAATCACGAGACCCAAGGATTTGTCACTTTTTGTCAACCCATAAAGATACACCTCCAATGGGTTGTGTATAAACCCAGGCTTGTATCTAGTCTCCAAAGGCAGTGGTATTCACTCCTGGTCCCTAAGAACTTCACGGTTTGAAATGTGTATTCGTGAATCATTGTCAATGTATGGACTGGATAGTCCAGGTCCCGGTTTCCCGATAGCAATGGAACTTAGGCTGACGATGTTTTTAACACTGCATCTTTCCTACAACGCCTGAAGATGTAACATACAGAGTACACacaacattaaggacacctgctctttccattacatagcccagggatattcaactcttacccagaggtccagagcctgctggatttcctgttctacctgataataattgcacacacctggtgtcccaggacTAAATCtctccctggttagaggggaacaatgaaaaaaatgcAGTGgcactggctttgaggtccagagttgaccaggtgaatgctatgatcccttattgaggtcacttgttaaatctacttcaatcagtgtatgaaagggaggggacaggttaaagaaggatttataagccttgagacatggattgtgtgtcaATCAGaaggtgaatgagcaagacaagatttcagtgcctttgaacggggtatggtaggtgccagacgcaccggtttgtgtcaagaactgcaacgcggCTAGGTTTTTCACAAGTTTCCcatttgtatcaagaatggtccaccacccaaataaAATCCAGCCAACTTGTGCTGTCAAGTTGGAGACGTGCCAGGatccctgtagaacgctttcgacaccttgtagtcgtGGTTGCTCTCCAAATAAGAATTAAAATGATTGCTCTGTCATCTATTATATTGTGCTTGTTTGTGTGCTATATATTTTGTTGGACTCGAAGAATGTCAGTAGATTCTGATTTTTACCAGAAATCGGGTCATAATATTAACCTTGGCTTTCACAGCTTGTCATTTGGAACTTTAACATTTTGGATGTGAAAGGGAAAATATTTCTCAAAAAAAGGGAATCATTTTTGCAAGCACAAAATAAGTTCCCAGTTTAGTTACCTAATCTAACAACCAATAAATCATTAATGGTTGGTcctcaaactcattccacggagggccaagTGGCTGCAGGCTTTCGCTCCTCCCATGTACTTccttgatgaattaaggtcattaattagtaaggaactcccctcacctgattgtcggtcttaattgaaagggggaaaaaaacctGCAGGCCCTCCGTGAAATGACTGACATCCGATATATTTGTAGATGAGGCAGATGTCTATGCATTACAACCATTCAAAATTTAAATTGGAAGTGTACTACTAGCCTATAGTGTAGGTAGTGTAATATCACTGTACTATAAAGCAAGAGAAGAATACATTGAAACGACAATGTGCTTAGGCTTTAgatcacgtgtcaaactcattccacggagggccgagtgtctgcgggttttcgctcctcccctGTACTTGATGAATTAAGGTTACTGATTAGTAAGGCACTgcactcacctggttgtctagggcttCATTTAAAGGAAAAGCCAGCAGCCCTCAATGGAATGAGTGATGCCCCTGCCTTAGGTGATATGCGCGATATAGTACTCACCTTGGTGACATATCTAAAATGTTATGTAGTTTTACCATGTTAACATTAACTTGTCACTGTAATTTTCAATACATCGTTGGAAAAGGAAGGATATTGTTTATAGATGTCAGAAATGTAGCAGATTCACTGATATGCTTAGTAAAAAAGATTTGTTAGTCGAGTCGGTATCTCATATCATTTCCGCCCGTCAATTATGCTCATTCAGTGTAGTTTGCTTTTAGGCCAGTGTGATACGATTACATTTTGCGGTATGGTATATGAACTTCGGCTGCAGTTCATTTTacataaaataaaacatgtttaattAAACCATAACTCTGTACTTAAACCAATGCTGCCTCACTGAAAACAGACACTTGTATAATAATTTTGTAGAAGTATATATGCAGACAGAAAATGAGATTAATTGAAACATTTGGGTTTGCTAAGTGATTGTACGTGTTGCCTACTACACTTCCCACAATGTCCCTCAATACAGTATAAATAATCCTCTTAAGGAGCTGCCCCTTAAATTTTACCTGAAATGACTgcctaactgcctgtagctcaggacctgaagcaaggatttgcatattcttgataccatttgaaaggaaacactttgaagtatGTGGAAATGTGAACTAGGAGAATAACACAGCTCTGGTAAAAGTTGGTACAAAATAACGCATTGTTTTTAAAATTTGTATTACggtttgaaatgcaagagaaaggtcatgtattattccagcccaggtacaATTTAGATTTACCACAAGattgcagcagtgtatgtgcaaggtTGAAgattgatccaatgaaccattgcatttctgttaaattttgtatcaagactccccaaatgtgcctaattggtttattattaacattaagttcataactgtgcactcaaacaatagcatggtattctttcactaatagctactgtaaattggacagtgcggttaaattcttgttaatctaagctttctgccaatatcagatgtctatgtcctgggaaacttTCATTACTTACAATCTCATTAgcatacgttagctcaaccgttccATGGGGaacccaccgatcctgtagaggataactgacaatacaacagaatgtttaaaatacatttatttggcAATTGTTGTAATTGATAACATTGAGTACAAAACATAGAAGCCAAACAATGAAAGTGGTAAGACATTTTTATTACAGATACCTTGACATCTTTGTAAATGTTAAATGTACAGAATcacaacaaaacatgcatgtattcaGTCACTGCATGACCAGTGGCAAGCTCTAGTTTCAGAGTTGTGGATGGCAGCCGCACTACCAAATAAGTAGATTAAAGACTTGATTTACAACA
>XM_021578195.2
ATTTCCGCCCCATTTTACAGGGTGGTGGCAAGTTGCATTGGAGACTTCAAGGCGGAGGTGGCTAAGAGCGATCTGTCACGACAAGTTTACAAATTTACCTGTTTTCAAGGGACAAACACCCTAGGGGAAAGGCTATTCCAATAACCAACGTGGCAGAAGTAGAATTCGGAAATGGATGGAATGTATGGATGGGGACAGCCCCCTTTGAACCAAGggaaTTCTTTCATAGAGATCATTGAGCAGCCCAAGCCGAGAGGCATGAGGTTCAGGTACAAGTGTGAGGGGCGCTCGGCGGGCAGCATCCCGGGAGAGAAGAGCAACGATACCACCAAGACACACCCCGCCATCAAGGTGCACAACTACAATGGTCCCCTGCGTGTCCGTGTCTCcttggtgaccaagaacccgccTCACAAGCCCCACCCGCACGAGCTGGTGGGGAAAGACTGCAAACATGGCTACTATGAGGCAGACTTGCAGGAGAGACGAGTACACAGTTTTCAGAACCTGGGCATTCAGTGTGTGAAGAAAAAGGATGTGAACGAAGCAGTTTCCTGTAGACTGCAGACCCAAAACAACCCTTTCAACATTCCCGAGGCGAAGGTGTGGGAGGAGGAGTTTGACCTGAATGCAGTGAGGCTTTGTTTCCAGGCCTCGATCACTCTACCTACCGGTGAACTTCACCCTCTGGAGCCCGTGGTGTCTCAGCCCATCTACGACAATAgagCACCCAACACAGCAGAATTGAAGATCTGTCGAGTGAACAGAAACTCTGGGAGCTGCAGAGGAGGGGACGAGATATTCTTACTCTGTGACAAAGTGCAAAAAGAGGACATCGAGGTACGGTTCTTCCAGGACTCGTGGGAGGGGAAGGGCACCTTCTCCCAGGCGGACGTCCACAGGCAGGTGGCCATCGTGTTCCGTACCCCGCCCTTCTACGACACCAACTTGACCGAGCCAATCAAAGTGAAGATGCAGCTTCGCAGGCCCTCGGACCGCGAGGTCAGCGAGCCAATGGACTTCCAATTCCTGCCCTCCGACCCAGATGAATATAGACTGATAGAGAAGCGAAAACGGACAGAGGGAATGTTCCAGAATCTGAAGCTGGGGTCCATATCAGGGGCCATGCCAGCAGAGAGGCCTTTCAACACTGCCAGAAGAACAGTCGCCACCAAGCCAGCAGCTAGCCAGCCTGTGAACCTAGTGGCGCCCCCTCGTGCCGCCTCTGTGAAGCCCCAGCCCTACTATGATAGCCCCCAGCCTGGCCAGCTGTTCCGAACCCAGCCCAAAGCagagccctcctcctccactccagcAGAGACCTGGAAGTTCCTCAACAGCCTGACCTTGGACTCCCAACACAAAGCCACCCCCGTGGCCCAATTCACCAACCCCCAGGCATCTGCAGCCACCTCACAGGCCTTCCCCACCGTCAACCTGTCGGACCTTCACGGCTTCACCTTCTCCACCTTCGCTAGTCCCCAGGAGCCAGTTGGCGCAGCCGCTACCCCAGAGCCCACCTCTACCTACGGGGTCCAGGATTCCCAGTTCAGGGTGGATGGCCCCATGGTGGATGAGGAGCTACCCGAGTTCCCCAGCTTCTCTGAGGTCCACCAGTCAGGGACACTAGATAACATAAACATCGACGACTTCCAGGCTATGCTGGTCCAGAGTGGTCTGGCTGGAGAGGGGCCAGGGAACAGTAGGGTGTCGGTCGCTCAGGCACCCTGCCACTTACCTGCCACCAACCCTGTGGTCAACAACAGCTGTGGCGGCAGCACCTGGATGAACTACCCCAACAGCATCgtgaacctgctccagagtgagGGCATGATCGACAGTTCTCCTGGCAACTCCAGCCAGCCGGCCGTCCTCGACGACCTGGACGTCTTCAGCTCCATGGACGAAGACCGTCTCATTTCCATCCTGAACAGTGGCAACCAGGCCGGTTTCGTGTCCGGACATCAGACTTAGAGACCGCTCTGATTTTACAGATATTTTTACTGCAATACTACATTTCTGTAGACCCAGCTCCCTTCCAACCAAACTTCCCTTGTACTTGTTATTCTAATGGACTACAAAGAAAATACATTTGGCTGGCTGATCGAGAATCAGATGGTGCTGTTTGCGCTCTTCTCTATGTGGATTGTGGACATGTTAATTGGGACAGCTGCAGAACCCTACCTGTACTCGATGAACAGAGTGAATATGAGAGAGGGCTACAGGGAACCCCTGGTAACTGCCAGTTTGTGGGCAATCACGAGACCCAAGGATTTGTCACTTTTTGTCAACCCATAAAGATACACCTCCAATGGGTTGTGTATAAACCCAGGCTTGTATCTAGTCTCCAAAGGCAGTGGTATTCACTCCTGGTCCCTAAGAACTTCACGGTTTGAAATGTGTATTCGTGAATCATTGTCAATGTATGGACTGGATAGTCCAGGTCCCGGTTTCCCGATAGCAATGGAACTTAGGCTGACGATGTTTTTAACACTGCATCTTTCCTACAACGCCTGAAGATGTAACATACAGAGTACACacaacattaaggacacctgctctttccattacatagcccagggatattcaactcttacccagaggtccagagcctgctggatttcctgttctacctgataataattgcacacacctggtgtcccaggacTAAATCtctccctggttagaggggaacaatgaaaaaaatgcAGTGgcactggctttgaggtccagagttgaccaggtgaatgctatgatcccttattgaggtcacttgttaaatctacttcaatcagtgtatgaaagggaggggacaggttaaagaaggatttataagccttgagacatggattgtgtgtcaATCAGaaggtgaatgagcaagacaagatttcagtgcctttgaacggggtatggtaggtgccagacgcaccggtttgtgtcaagaactgcaacgcggCTAGGTTTTTCACAAGTTTCCcatttgtatcaagaatggtccaccacccaaataaAATCCAGCCAACTTGTGCTGTCAAGTTGGAGACGTGCCAGGatccctgtagaacgctttcgacaccttgtagtcgtGGTTGCTCTCCAAATAAGAATTAAAATGATTGCTCTGTCATCTATTATATTGTGCTTGTTTGTGTGCTATATATTTTGTTGGACTCGAAGAATGTCAGTAGATTCTGATTTTTACCAGAAATCGGGTCATAATATTAACCTTGGCTTTCACAGCTTGTCATTTGGAACTTTAACATTTTGGATGTGAAAGGGAAAATATTTCTCAAAAAAAGGGAATCATTTTTGCAAGCACAAAATAAGTTCCCAGTTTAGTTACCTAATCTAACAACCAATAAATCATTAATGGTTGGTcctcaaactcattccacggagggccaagTGGCTGCAGGCTTTCGCTCCTCCCATGTACTTccttgatgaattaaggtcattaattagtaaggaactcccctcacctgattgtcggtcttaattgaaagggggaaaaaaacctGCAGGCCCTCCGTGAAATGACTGACATCCGATATATTTGTAGATGAGGCAGATGTCTATGCATTACAACCATTCAAAATTTAAATTGGAAGTGTACTACTAGCCTATAGTGTAGGTAGTGTAATATCACTGTACTATAAAGCAAGAGAAGAATACATTGAAACGACAATGTGCTTAGGCTTTAgatcacgtgtcaaactcattccacggagggccgagtgtctgcgggttttcgctcctcccctGTACTTGATGAATTAAGGTTACTGATTAGTAAGGCACTgcactcacctggttgtctagggcttCATTTAAAGGAAAAGCCAGCAGCCCTCAATGGAATGAGTGATGCCCCTGCCTTAGGTGATATGCGCGATATAGTACTCACCTTGGTGACATATCTAAAATGTTATGTAGTTTTACCATGTTAACATTAACTTGTCACTGTAATTTTCAATACATCGTTGGAAAAGGAAGGATATTGTTTATAGATGTCAGAAATGTAGCAGATTCACTGATATGCTTAGTAAAAAAGATTTGTTAGTCGAGTCGGTATCTCATATCATTTCCGCCCGTCAATTATGCTCATTCAGTGTAGTTTGCTTTTAGGCCAGTGTGATACGATTACATTTTGCGGTATGGTATATGAACTTCGGCTGCAGTTCATTTTacataaaataaaacatgtttaattAAACCATAACTCTGTACTTAAACCAATGCTGCCTCACTGAAAACAGACACTTGTATAATAATTTTGTAGAAGTATATATGCAGACAGAAAATGAGATTAATTGAAACATTTGGGTTTGCTAAGTGATTGTACGTGTTGCCTACTACACTTCCCACAATGTCCCTCAATACAGTATAAATAATCCTCTTAAGGAGCTGCCCCTTAAATTTTACCTGAAATGACTgcctaactgcctgtagctcaggacctgaagcaaggatttgcatattcttgataccatttgaaaggaaacactttgaagtatGTGGAAATGTGAACTAGGAGAATAACACAGCTCTGGTAAAAGTTGGTACAAAATAACGCATTGTTTTTAAAATTTGTATTACggtttgaaatgcaagagaaaggtcatgtattattccagcccaggtacaATTTAGATTTACCACAAGattgcagcagtgtatgtgcaaggtTGAAgattgatccaatgaaccattgcatttctgttaaattttgtatcaagactccccaaatgtgcctaattggtttattattaacattaagttcataactgtgcactcaaacaatagcatggtattctttcactaatagctactgtaaattggacagtgcggttaaattcttgttaatctaagctttctgccaatatcagatgtctatgtcctgggaaacttTCATTACTTACAATCTCATTAgcatacgttagctcaaccgttccATGGGGaacccaccgatcctgtagaggataactgacaatacaacagaatgtttaaaatacatttatttggcAATTGTTGTAATTGATAACATTGAGTACAAAACATAGAAGCCAAACAATGAAAGTGGTAAGACATTTTTATTACAGATACCTTGACATCTTTGTAAATGTTAAATGTACAGAATcacaacaaaacatgcatgtattcaGTCACTGCATGACCAGTGGCAAGCTCTAGTTTCAGAGTTGTGGATGGCAGCCGCACTACCAAATAAGTAGATTAAAGACTTGATTTACAACA

Function

NR:

description
putative transcription factor p65 homolog isoform X2

GO: NA

KEGG:

id description
K04735 RELA; transcription factor p65

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578194.2 False 5268 mRNA 0.46 11 51457228 51485888
XM_021578195.2 True 5256 mRNA 0.46 11 51457228 51485888

Neighbor

gene id symbol gene type direction distance location
LOC110500885 LOC106608683 coding upstream 43981 51370721 ~ 51413247 (+)
LOC110500687 LOC106608680 coding upstream 95694 51350884 ~ 51361534 (+)
LOC110500686 LOC106608678 coding upstream 125036 51316814 ~ 51332192 (+)
LOC110500685 NA coding upstream 156032 51298879 ~ 51301196 (+)
LOC110500679 LOC106608674 coding upstream 226408 51217984 ~ 51230820 (+)
LOC110500694 LOC106608686 coding downstream 15710 51501598 ~ 51507145 (+)
LOC110500695 LOC106608687 coding downstream 23395 51509283 ~ 51554830 (+)
LOC110500700 LOC106608599 coding downstream 1476244 52962132 ~ 52963960 (+)
LOC110500701 LOC106608599 coding downstream 1483620 52969508 ~ 52971316 (+)
LOC110500702 LOC106608597 coding downstream 1503474 52989362 ~ 52996635 (+)
G1749650 NA non-coding upstream 31687 51418969 ~ 51450475 (+)
G1749654 NA non-coding upstream 40875 51414780 ~ 51416353 (+)
G1749649 NA non-coding upstream 43010 51413371 ~ 51414218 (+)
G1749677 NA non-coding upstream 53687 51389695 ~ 51403541 (+)
G1749674 NA non-coding upstream 72082 51384345 ~ 51385146 (+)
G1749655 LOC106608688 non-coding downstream 84523 51570411 ~ 51573264 (+)
G1749835 NA non-coding downstream 290513 51776401 ~ 51777211 (+)
G1749836 NA non-coding downstream 291823 51777711 ~ 51780760 (+)
G1749858 NA non-coding downstream 334765 51820653 ~ 51820956 (+)
G1749651 NA other upstream 93848 51362686 ~ 51363380 (+)
gbrap gbrap other upstream 315220 51134089 ~ 51142008 (+)
LOC110500674 dulda other upstream 323890 51116362 ~ 51133346 (+)
LOC110500883 LOC106577571 other upstream 853951 50598799 ~ 50615280 (+)
G1750012 NA other downstream 585712 52071600 ~ 52079002 (+)
G1750030 LOC106608688 other downstream 608821 52094709 ~ 52095105 (+)
G1750050 NA other downstream 705312 52191200 ~ 52197007 (+)
G1751699 LOC106608599 other downstream 1476561 52962449 ~ 52972383 (+)
LOC110500722 NA other downstream 1765861 53251413 ~ 53256660 (+)

Expression


Co-expression Network