LOC110500700 (LOC106608599)


Basic Information

Item Value
gene id LOC110500700
gene name LOC106608599
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 52962132 ~ 52963960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578207.2
GAAAAACATTGTGCTTATTTTTTGTTCATGTAGCACATATTAAGGGTAGACTGTGTTGGTATACGCACAGATAGGACAATGAGAccgatttcaccggatgtataattATGAAGCAGTCGCTTGGCAGTTATGTCGCCCGCCAAGCAGGGAGTTTTTGTATGAGGCTAGTAGCATAGAATCTCTCTCCAATAATCAATCTGAGCACCAGGCTTGTCGGTATGTTCTCCGTATACCCCAATGGTCCGAATAGCCTCTCTCTATTTGGTGGGGAGTGGACATTTCAACCGGATACTTCAGATTTCATATCCGGTGAAACATGTGACTTCTTGTTTTGTCTTTGGTGTTAAAGTGGGCGAAAGTGGTATTTGGTATAACGTGCGATAGTTTCAGTGACGGTGTTCGGTCAGTCTGACAGTAAAGATGCCATTGTGTGGAGGAACAACTGGGCCAAAGGATGCCACTGAGGAGGTGCAGAAGATTTGTGATGAGATGAAGCCGCATGCAGAGCAGAAAACGGGGAGGAATTTTGACGTTTTCACAGCGAAAATTTACAAGACTCAGTTGGTGGCAGGGACCAACTTCTTCATCAAGGTTCATGTTGGTGGTGAAGACCATGTCCACCTGCGCGTGTATAAAATGCTGCCACACGCCGGAAGCAAACTGGAGCTGACCAGCCTGCAGGAGTCCAAAGCCCACAGCGACCCCATCGAATACTTCTGATTAaccctgacctttgaccccaTCAAGTACTTCTAATGACCCCTGTGACCCAGCCGCAGTCCGAGCCGAACCCCGGTGCCTACCCTACCCAATACACCACAGCCTCCTTTCCCTCCACATAATAGATCTGTGGTCATTCTACAGCCCAGGTAGCCTTTTAATATCAGTTTTCAGTGTTTCTTAAAATGATTTTATAATATGTAGCTGATGGGAAACCTTCATGTATGAAGGGAAATTGAAATAATGAATGAGCTCCAAACATGAATGTATATTTGCCTACTCAATTAAAGACAATATACTATTTTGCCACATGGTTAATAAATCATAATACTTTGTAACGAAGATTAA

Function

NR:

description
cystatin-B-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0004869 cysteine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K13907 CSTA_B; cystatin-A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578207.2 True 1068 mRNA 0.44 3 52962132 52963960

Neighbor

gene id symbol gene type direction distance location
LOC110500695 LOC106608687 coding upstream 1407302 51509283 ~ 51554830 (+)
LOC110500694 LOC106608686 coding upstream 1454987 51501598 ~ 51507145 (+)
LOC110500691 LOC106608684 coding upstream 1476244 51457228 ~ 51485888 (+)
LOC110500885 LOC106608683 coding upstream 1548885 51370721 ~ 51413247 (+)
LOC110500687 LOC106608680 coding upstream 1600598 51350884 ~ 51361534 (+)
LOC110500701 LOC106608599 coding downstream 5548 52969508 ~ 52971316 (+)
LOC110500702 LOC106608597 coding downstream 25402 52989362 ~ 52996635 (+)
LOC110500711 LOC106608589 coding downstream 141597 53105557 ~ 53139436 (+)
si:dkey-28a3.2 LOC106608587 coding downstream 184859 53148819 ~ 53159292 (+)
LOC110500717 LOC106608585 coding downstream 200151 53164111 ~ 53214983 (+)
G1751687 NA non-coding upstream 71832 52889765 ~ 52890300 (+)
G1751646 NA non-coding upstream 156618 52805257 ~ 52805514 (+)
G1751645 NA non-coding upstream 159681 52802224 ~ 52802451 (+)
G1751642 NA non-coding upstream 160780 52801136 ~ 52801352 (+)
G1751638 NA non-coding upstream 166854 52795049 ~ 52795278 (+)
G1751700 NA non-coding downstream 10378 52974338 ~ 52975041 (+)
G1751727 NA non-coding downstream 11958 52975918 ~ 52976149 (+)
G1751729 NA non-coding downstream 13809 52977769 ~ 52977970 (+)
G1751738 NA non-coding downstream 36714 53000674 ~ 53001197 (+)
G1751739 NA non-coding downstream 43176 53007136 ~ 53007397 (+)
G1750050 NA other upstream 765125 52191200 ~ 52197007 (+)
G1750030 LOC106608688 other upstream 867027 52094709 ~ 52095105 (+)
G1750012 NA other upstream 883130 52071600 ~ 52079002 (+)
G1749650 NA other upstream 1511657 51418969 ~ 51450475 (+)
G1749651 NA other upstream 1598752 51362686 ~ 51363380 (+)
LOC110500722 NA other downstream 287789 53251413 ~ 53256660 (+)
LOC110500735 ablim2 other downstream 1242738 54206483 ~ 54342581 (+)
G1753100 NA other downstream 2037619 55001579 ~ 55011678 (+)
LOC110500754 LOC106591080 other downstream 2626645 55590450 ~ 55592100 (+)
G1755158 NA other downstream 3422447 56386407 ~ 56387622 (+)

Expression


Co-expression Network