LOC110500702 (LOC106608597)


Basic Information

Item Value
gene id LOC110500702
gene name LOC106608597
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 52989362 ~ 52996635 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578209.2
AGTGACTAAGCGCTCCTGCAGCAGTCAGTCTGCttattggtgtgtgtgagtgagtgtgtggaaCATTTGGAAGCATGAGGACCTTCGTGTTGTTGATGTGCCTTGTAATGGGCTGCCTGGCTCAGGTACCTCATACATGCAggtctCCCCCTCTTCTGACCGGAGCCCTCTCTGTGGCAAATGAGAAGTTTTATGCAAATGCAAAATACACCTATGATGCGATGCTCAAGCGTATCCGCTTCAAGGAGGTTGGCTATTATGAGAACAAGACATTCGGCATTGATGCCCTTCTGCTCTTCAGAGAGGGTGTCATGTATACGATTAACCACAGGAACAAAACCTGTAAGAAGGAGAGGCTGAAAAGGGAGGACTTCCACCCTATGGAGATCCCTGCCGATGCTGCTCTGCTGGGCCAGGTGATCTTAGGGAGCTCCTCTGGTCCAGGACAAGGTCTGCTGGTCAACACCTGGTATGGAGAAGTTGCAACCCCAAGTGGTAAAGACAAGTGGGTGAGTACCTTCACTGAGTTTGGATGCATACCTGTCAGCTCTGCATACTACACGGACAAGACCGGCTGGATGCTTTCAAGCTTCTTCAACATTGTCGTTGGGATCCTGGACCCCCTGGAGTTCTTCCCTCCTAAATTCTGTCAGGGCGCTTTACTGGATGAGACTGAAGAGGCTGCCAACTTCTACAGCATTTTCAAAAACCTTACAAAATATTCCTAAAGGACATTGTCTTTCATTTTCTTATGAGAATTTCACACAACTATTGCTTATTTTTAACCTGAGATAAAAAGccgttttttttttcaaatgaatTCATAAATATAAAAAAGGACTGTGTTAGTGTaggaaaaaaggggtaaaacacAAGTTACAAAAATAAATCGACTACTGACCATGTTACAAGTCAGTTACACTGAGCATTATATGTACACATTACCATCGCAAACGTTAATTTCTTGCATTGAACTGTCCTTCTGAATAATTTATTTTTCAAAGGCAAGTCTAcagtccgggttagggtttggccggggtagaccgtcattgtaaataagaatttgttcttaactgaattgcctagttgaataaaggtccaattaaa

Function

NR:

description
ependymin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578209.2 True 1107 mRNA 0.44 6 52989362 52996635

Neighbor

gene id symbol gene type direction distance location
LOC110500701 LOC106608599 coding upstream 18046 52969508 ~ 52971316 (+)
LOC110500700 LOC106608599 coding upstream 25402 52962132 ~ 52963960 (+)
LOC110500695 LOC106608687 coding upstream 1434532 51509283 ~ 51554830 (+)
LOC110500694 LOC106608686 coding upstream 1482217 51501598 ~ 51507145 (+)
LOC110500691 LOC106608684 coding upstream 1503474 51457228 ~ 51485888 (+)
LOC110500711 LOC106608589 coding downstream 108922 53105557 ~ 53139436 (+)
si:dkey-28a3.2 LOC106608587 coding downstream 152184 53148819 ~ 53159292 (+)
LOC110500717 LOC106608585 coding downstream 167476 53164111 ~ 53214983 (+)
LOC110500719 LOC106608586 coding downstream 218594 53215229 ~ 53245179 (+)
cth1 LOC106608603 coding downstream 252039 53248674 ~ 53250658 (+)
G1751729 NA non-coding upstream 11392 52977769 ~ 52977970 (+)
G1751727 NA non-coding upstream 13213 52975918 ~ 52976149 (+)
G1751700 NA non-coding upstream 14321 52974338 ~ 52975041 (+)
G1751702 NA non-coding upstream 22672 52961160 ~ 52966690 (+)
G1751687 NA non-coding upstream 99062 52889765 ~ 52890300 (+)
G1751738 NA non-coding downstream 4039 53000674 ~ 53001197 (+)
G1751739 NA non-coding downstream 10501 53007136 ~ 53007397 (+)
G1751741 NA non-coding downstream 12925 53009560 ~ 53011461 (+)
G1751759 NA non-coding downstream 46681 53043316 ~ 53043540 (+)
G1751760 NA non-coding downstream 47557 53044192 ~ 53044412 (+)
G1751699 LOC106608599 other upstream 16979 52962449 ~ 52972383 (+)
G1750050 NA other upstream 792355 52191200 ~ 52197007 (+)
G1750030 LOC106608688 other upstream 894257 52094709 ~ 52095105 (+)
G1750012 NA other upstream 910360 52071600 ~ 52079002 (+)
G1749650 NA other upstream 1538887 51418969 ~ 51450475 (+)
LOC110500722 NA other downstream 255114 53251413 ~ 53256660 (+)
LOC110500735 ablim2 other downstream 1210063 54206483 ~ 54342581 (+)
G1753100 NA other downstream 2004944 55001579 ~ 55011678 (+)
LOC110500754 LOC106591080 other downstream 2593970 55590450 ~ 55592100 (+)
G1755158 NA other downstream 3389772 56386407 ~ 56387622 (+)

Expression


Co-expression Network