LOC110500886 (LOC106608597)


Basic Information

Item Value
gene id LOC110500886
gene name LOC106608597
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 52989323 ~ 52997339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110500886
TCCGGCACTTCATCCTGCCCATGCCGCATTCCCAACTCGGATGCCTTACTAAGCGTCCTCGACATGGGCTGTGGTTCCTCTGGCCTAAGACCCTGCATACACAAAGACTCTCCCTGGCCAGTGCAGATGACCTGTGCTGACATCTCCCCTATTGCTGTGCGCCTAATGGAGGAACACAGAGCAACCAACGCCATGCAACCTCAGAATCCTTCCTCAAAGCTGGACGTAGTTCTGAGAGCCTGGACCTCATTCTAGACAAGTGTACCATAGATACCTTGCTGCAGTCTAGGGAATGGGGAGCCAAGGTCAGCCAGGTGCTAAAGCAGTACCTGGAGGCATTGAGGAACTCTGGGTCTCACCTCCGGTTTTCAGACGATGACCCTGATGCCAGGATGTTGTGGTTGGAAAAAGAGGGCTGGGAGCCAGGGGTGATGGCTGCCAATGTGGGAGTGCAGGAGGTGGAGGAGCTAAGGGGAGTGACATATTACTGCTACCACGTTAACCCGTCCTGTAGCACAGTAGCTAGTTGGTTGTTGAAGTCTGTCTTGTTCCATTGCAGTAtagtcagtatagtataataagtAATTTCTTGATACAACTGACCGAGTCTCTTATCTGGACGTTTCTTTCTATGTCTACACAATATGAAGAGGTCTTGTGAAGTGCTAGCTGTCCACTATACTATGAAACtattactgtatttatttaattggacctttattcaactaggcaattcagttaagaacaaattcttatttacaatgacggtctaccccggccaaaccctaacccggactgTAGACTTGCCTTTGAAAAATAAATTATTCAGAAGGACAGTTCAATGCAAGAAATTAACGTTTGCGATGGTAATGTGTACATATAATGCTCAGTGTAACTGACTTGTAACATGGTCAGTAGTCGATTTATTTTTGTAACTTgtgttttaccccttttttcctACACTAACACAGTCCTTTTTTATATTTATGAattcatttgaaaaaaaaaacggCTTTTTATCTCAGGTTAAAAATAAGCAATAGTTGTGTGAAATTCTCATAAGAAAA
>TU2006080
CTCATTCTAGACAAGTGTACCATAGATACCTTGCTGCAGTCTAGGGAATGGGGAGCCAAGGTCAGCCAGGTGCTAAAGCAGTACCTGGAGGCATTGAGGAACTCTGGGTCTCACCTCCGGTTTTCAGACGATGACCCTGATGCCAGGATGTTGTGGTTGGAAAAAGAGGGCTGGGAGCCAGGGGTGATGGCTGCCAATGTGGGAGTGCAGGAGGTGGAGGAGCTAAGGGGAGTGACATATTACTGCTACCACGTTAACCCGTCCTGTAGCACAGTAGCTAGTTGGTTGTTGAAGTCTGTCTTGTTCCATTGCAGTAtagtcagtatagtataataagtAATTTCTTGATACAACTGACCGAGTCTCTTATCTGGACGTTTCTTTCTATGTCTACACAATATGAAGAGGTCTTGTGAAGTGCTAGCTGTCCACTATACTATGAAACtattactgtatttatttaattggacctttattcaactaggcaattcagttaagaacaaattcttatttacaatgacggtctaccccggccaaaccctaacccggactgTAGACTTGCCTTTGAAAAATAAATTATTCAGAAGGACAGTTCAATGCAAGAAATTAACGTTTGCGATGGTAATGTGTACATATAATGCTCAGTGTAACTGACTTGTAACATGGTCAGTAGTCGATTTATTTTTGTAACTTgtgttttaccccttttttcctACACTAACACAGTCCTTTTTTATATTTATGAattcatttgaaaaaaaaaacggCTTTTTATCTCAGGTTAAAAATAAGCAATAGTTGTGTGAAATTCTCATAAGAAAATGAAAGACAATGTCCTTTAGGAATATTTTGTAAGGTTTTTGAAAATGCTGTAGAAGTTGGCAGCCTCTTCAGTCTCATCCAGTAAAGCGCCCTGACAGAATTTAGGAGGGAAGAACTCCAGGGGGTCCAGGATCCCAACGACAATGTTGAAGAAGCTTGAAAGCATCCAGCCGGTCTTGTCCGTGTAGTATGCAGAGCTGACAGGTATGCATCCAAACTCAGTGAAGGTACTCACCCACTTGTCTTTACCACTTGGGGTTGCAACTTCTCCATACCAGGTGTTGACCAGCAGACCTTGTCCTGGACCAGAGGAGCTCCCTAAGATCACCTGGCCCAGCAGAGCAGCATCGGCAGGGATCTCCATAGGGTGGAAGTCCTCCCTTTTCAGCCTCTCCTTCTTACAGGTTTTGTTCCTGTGGTTAATCGTATACATGACACCCTCTCTGAAGAGCAGAAGGGCATCAATGCCGAATGTCTTGTTCTCATAATAGCCAACCTCCTTGAAGCGGATACGCTTGAGCATCGCATCATAGGTGTATTTTGCATTTGCATAAAACTTCTCATTTGCCACAGAGAGGGCTCCGGTCAGAAGAGGGGGagaccTGCATGTATGAGGTACCTGAGCCAGGCAGCCCATTACAAGGCACATCAACAACACGAAGGTCCTCATGCTTCCAAATGttccacacactcactcacacacaccaataaGCAGACTGACTGCTGCAGGAGCGCTTAGTCACTTCCTTATAAACAGTACGAAACTGAGGCTCCAGATCCTAG
>TU2006081
aattggacctttattcaactaggcaattcagttaagaacaaattcttatttacaatgacggtctaccccggccaaaccctaacccggactgTAGACTTGCCTTTGAAAAATAAATTATTCAGAAGGACAGTTCAATGCAAGAAATTAACGTTTGCGATGGTAATGTGTACATATAATGCTCAGTGTAACTGACTTGTAACATGGTCAGTAGTCGATTTATTTTTGTAACTTgtgttttaccccttttttcctACACTAACACAGTCCTTTTTTATATTTATGAattcatttgaaaaaaaaaacggCTTTTTATCTCAGGTTAAAAATAAGCAATAGTTGTGTGAAATTCTCATAAGAAAATGAAAGACAATGTCCTTTAGGAATATTTTGTAAGGTTTTTGAAAATGCTGTAGAAGTTGGCAGCCTCTTCAGTCTCATCCAGTAAAGCGCCCTGACAGAATTTAGGAGGGAAGAACTCCAGGGGGTCCAGGATCCCAACGACAATGTTGAAGAAGCTGAACACATAATGGACTGAGGAAGTTTCTCAGAACGAGGATATGGAACAAAGACTACATAGACCATGTCTTGATGTCAAATATGACactac

Function

NR:

description
ependymin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110500886 False 1067 mRNA 0.44 1 52996273 52997339
TU2006080 False 1605 lncRNA 0.44 6 52989323 52997094
TU2006081 True 607 lncRNA 0.37 2 52995834 52996632

Neighbor

gene id symbol gene type direction distance location
LOC118942792 NA coding downstream 39417 52954794 ~ 52956856 (-)
LOC110500698 rasgrp2 coding downstream 42099 52888820 ~ 52954174 (-)
LOC118942945 NA coding downstream 73480 52919993 ~ 52922793 (-)
trnaa-ugc-151 NA coding downstream 111931 52884269 ~ 52884342 (-)
LOC110500696 LOC106608688 coding downstream 355041 51570399 ~ 52641232 (-)
LOC110500704 LOC106608596 coding upstream 4316 53001655 ~ 53006323 (-)
LOC110500705 NA coding upstream 11354 53008693 ~ 53009427 (-)
LOC110500703 LOC106608595 coding upstream 12219 53009558 ~ 53024732 (-)
sf1 LOC106608594 coding upstream 31240 53028579 ~ 53041107 (-)
LOC118943021 NA coding upstream 35367 53032706 ~ 53032837 (-)
G1752111 NA non-coding downstream 12116 52981286 ~ 52984157 (-)
G1752104 NA non-coding downstream 20478 52975561 ~ 52975795 (-)
G1752091 NA non-coding downstream 21208 52974338 ~ 52975065 (-)
G1752068 NA non-coding downstream 23800 52963147 ~ 52972473 (-)
G1751988 NA non-coding downstream 28629 52918076 ~ 52967644 (-)
G1752122 NA non-coding upstream 30627 53027966 ~ 53028168 (-)
G1752123 NA non-coding upstream 45669 53043008 ~ 53043251 (-)
G1752089 NA non-coding upstream 162335 53159674 ~ 53160072 (-)
LOC110500716 NA non-coding upstream 163591 53160930 ~ 53164050 (-)
G1751128 NA other downstream 867955 52127998 ~ 52128318 (-)
c21h11orf68 cssa07h11orf68 other downstream 1495060 51485700 ~ 51501323 (-)
G1750625 NA other downstream 1759110 51236885 ~ 51237163 (-)
LOC110500668 trmt44 other downstream 1947185 51036609 ~ 51051426 (-)
G1749122 LOC106608652 other downstream 2443748 50542435 ~ 50552525 (-)
LOC110500888 peli3 other upstream 377330 53370137 ~ 53405755 (-)
G1752268 NA other upstream 421061 53418400 ~ 53419325 (-)
G1752321 LOC103370121 other upstream 505580 53502919 ~ 53505011 (-)
G1753637 NA other upstream 1034243 54031582 ~ 54032306 (-)
G1754055 NA other upstream 1845726 54843065 ~ 54849083 (-)
LOC118943018 NA coding downstream 1128198 51861002 ~ 51861125 (-)

Expression


Co-expression Network