LOC110500703 (LOC106608595)


Basic Information

Item Value
gene id LOC110500703
gene name LOC106608595
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 53009558 ~ 53024732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958152.1
TCAATTGGGCTGGAGGTTCTGTAAGACCCGCCCTATGTGCTCGACAGTTTGTATGTGCGTTTATATATATAACAGTGCAGGTCTGGCATACCAACTCTGGTGTCCACACTTTGacgagacagagggaggaaggaaggacacACAGTGTGACACGCGAAGCCATCTCCCATCATCCTCGGTTGATATTTGCCTTTCGGATCTACAGTCGCACAATAGAAAATACGCATTTACCAAGATGCCCAAGCCACTGACAGACCAGGATAAGAGGAAGCAGATATCGGTGCGGGGGCTTGCAGGAGTGGAAAATGTTTCAGACCTTAAGACCAATTTTAATCGCCATCTCCACTTTACTCTGGTAAAGGACCGAAATGTGGCGACCAAACGGGACTACTACTTCGCCTTGGCCAACACTGTCCGCGACCATCTGGTGGGCAGATGGATCAGGACGCAGCAGCACTACTATGAGAAAGACCCCAAACGTGTGTATTACCTGTCCCTTGAGTTCTACATGGGGCGCACCCTGCAGAATACAATGGTGAACCTGGCTCTGGAGAACGCATGCGACGAGGCTACCTATCAGTTGGGCCTGGACATGGAGGAGCTGCAGGACATTGAGGAAGATGCCGGCCTGGGAAATGGTGGCCTTGGACGGCTCGCCGCCTGCTTCCTAGATTCCATGGCGTCTCTGGGACTGGCAGCTTACGGCTACGGCATCCGCTATGAGTTCGGCATCTTCAACCAGAAAATTGTGAATGGCTGGCAGGTAGAGGAGGCTGACGATTGGCTGCGCTACGGCAACCCCTGGGAGAAGGCCCGCCCTGAGTACATGCGACCCGTCCACTTCTACGGCAGAGTGGAGCACACCCCCGAGGGTGTGAAATGGGTCGACACACAGgtagtgttggCCCTTCCTTATGACACCCCAGTCCCTGGCTACAGGAACAACGTTGTGAACACCATGAGACTGTGGTCTGCCAAGGCCCCCTGTGATTTCAACCTGAAAGACTTCAATGTGGGTGGCTATATTCAAGCTGTGCTGGACAGAAACTTGGCTGAGAACATCTCCCGTGTTCTGTACCCCAATGACAACTTCTTCGAGGGGAAGGAGCTTCGTCTGAAGCAGGAGTACTTTGTGGTGGCGGCCACTCTGCAGGACATCGTCCGTCGCTTCAAGTCCTCCAAGTTCGGCTCCACTGAGGTTGTGCGCGTTGACctgtccaccctacctgacaaGGTGGCCATCCAGCTGAACGACACCCACCCTGCCATGGCCATCCCTGAGCTGATGAGGATCTTGTTGGACACGGAGCACCAGAAATGGGAGAAGGCCTGGGACATCTGCACACGTACCTGTGCCTACACCAACCACACCGTCCTGCCTGAGGCTCTGGAGCGCTGGCCCACAGACCTGCTCCAGAACCTTCTGCCCAGACACCTGGAGATCATCTACGAGATCAACCGACGTCACCTGGAGcgCATCGCTAAGCTCTACCCCGGGGACCAAGATCGTCTGCGCCGCATGTCCCTGGTGGAGGAGGGCGACCAGAAGAAGATCAACATGGCCCACCTGTGCATCGTGGGCTCCCACGCCGTCAACGGAGTGGCCCGCATCCACTCGGACATCCTCAAAGCAACCCTGTTCAAGGACTTCTACGAGGTGGACCCCCACAAGTTCCAGAACAAGACCAACGGGATCACGCCCCGACGCTGGCTGGTCATGTGCAACCCTGGGCTGGCTGAAGTCATTGCAGAGAGGATCGGTGAGGATTACATCCGCGATCTGGACCAACTGAAGAAGTTGCTGGCGTTTGTGGATGACGACTCTTTGATTCATGACATCGCCAAGGTCAAACAGGAGAACAAGCTTAAGTTTTCTGCCTATCTCGAGGAGCACTACAAGGTGAAGATCAACCCCAACTCCATGTTCGACGTTCAAGTCAAGAGGATCCACGAGTACAAGAGGCAGCTGCTCAACTGCCTGCACATCATCACTCTCTACAACCGCATCAAGAAGGAGCCCAACAAGAATTGGACCCCCAGGACTATCATGATTGGAGGAAAGGCTGCCCCTGGGTACCACACGGCAAAGCTGATCATTAGGCTGATCACTGCCATCGGAGAGATTGTCAACCACGACACTGTGGTGGGAGACCGCCTCAAAGTCATCTTCCTGGAGAACTACAAGGTCACTCTAGCAGAGAAAAtCATCCCTGCGTCCGACCTGTCTGAGCAGATCTCCACAGCTGGCACTGAGGCGTCTGGCACTGGCAACATGAAGTTCATGCTGAACGGAGCGCTCACCATTGGCACCATGGACGGAGCCAACGTAGAGATGGCCGAGGAGGCCGGAGAAGAGAACCTCTTCATCTTCGGCATGAGGGTGGACGACGTGGATGCCATGGACAAGAGTGGATATGATGCCATGGACTACTACAACCGCATTCCTGAGCTGAAGCAGGCCATGGACCAGATCGCTGGTGGATTCTTTAGCCCCGACCAGCACGACCTCTTCAAGGACATTGTCAACATGCTGCTGCACCATGACAGATTCAAGGTGTTCGCTGACTACGAAGCTTACATCAAATGCCAAGAGAAAGTCAGTGCTCTCTACAAGAACCCTAAAGAATGGACCAAGATGGTGATCCACAACATTGCTGGTTGTGGTAAATTCTCTAGCGACCGCACTATCTCCCAGTACGCCCGGGAGATCTGGGGCATGGAGCCCAGCCTGGAAAGGATCCCTGCCCCAGACGATCCTCGCCAATAAACCCCAGGCCTAAAACCAACCTCTGGTTTTTCCACAGCCCCGGCTTCTGGTTTTGCCTCTGGCTGTTCCACAAAAACCATTTTAACTTGAGAAATGGTTTAGAAACCTGAAAGCTCCCTGTAACTAGTACATTTTCATTGTGTCATTTCAGTGTGGTCAGTATTAGTTGATGATTGACTATACATGTAGCAATCCCTGTCCGGCTACGTGTTGGCCAATAACCTGATACCACTTTCAACCTCGACATTCAGCATTCATTTTCTCAATGGGCTAATACAAAATCAGCATTCACCTTCTCAATGGGCTAATACAAAATCAACATTCATCTTCTCAATGGGCGAATTCAAAATCAGCATTCACCTTCTCAATGGGCTAATACAAAATCAGCATTCACCTTCTCAATGGGCTAATACAAATCAGCATTCACCTTCTCAATGGGCTAATACAAATCAGCATTCACCTTCTCAATGGGCTAATACAAAATCAGCATTCACCTTCTCAATGGGCTAATACAAAATCAGCATTCATCTTATCAATGAGCTAATACAAAATCAGCATTCATCTTCTCAATGGGCGAATTCAAAATCAGCATTCACCTTCTCAATGGGCTAATACAAATCAGCATTCATCTTCTCAATGGGCGAATTCAAAATCAGCATTCATTTTCTCAATGGGCGAATTCAAAATCAGCATTCACCTTCTCAATGGGCTACAAATCAGCATTCACCTTCTCAATGGGCTAATACAAAATCAGCATTCACCTTCTCAATGGGCTAATACAAAATCAGCATTCACCGTCTCAATGGGTTAATTCAAAATCAGCATTCACCTTCTCACATGTACCAGCAATGCATAGTCAACTGGCTTGTGCAACATGAATAACATGAATAACACTGTTCACCATCATTTAAGCTAACATGGTTAGAGAATAGACCCTTTAACAGTCAGTGGGGCCAACAAGTAGCTGGAAACCTCACCACTGTCTAATGGTACCAAAACCATGTCTTCCAAGAATGAGACATGGTGGGACATAGAGCCTTATCAAAATAAGCACGTTCTTCTCACATAGACACTGTGATTCTACACTACTGGTTCGGCCTGCCAAGGACCACCTCTTTACTCATATCTGCACCAAATAACCACTCAAGTTGAAGGGACTTGGTTAACATGCGTGATCCTTGATGTTATAAAACTGTTTGCTcaatgtatgtctgtatgtcgaATGTAGTAATTTGTGCATGTTATTAATGCTTGTGTTTTGGGTAGCCCACACACAATCCTTATTGCTGAAATACTTTCTGCTATAAGCTGCGTTTTGTTTAGAATGATCCCATCAGTAGATCCTCAAAACGTTGTTCCAGTGTTGGAAAATGATCCTTCATATAGTCCAACAAACTAAgccttctctcctccaccttcTCTGCCTAATACCTCTCTGAGTGACTATAATGCTGCCTTAATAACTAAGCTGTGTCTGTAGTTGTTCAGCCTAAAGTGACCCCTCACTGTTAAGCTGCAAGTCTTTTTTGCTGTTCAGATAAATAACAATTTCTGGTACAATAGTATTTCTCACTGTTTGGAAGTCTTGACTTAGTGTTAACTACTGAATCACTAGTAATTGAGTGTGTCGGGTTGATAAAGATTGCACATGTCCAGTAGTTTTCTTCCATTAGAGAGACTCTAAGCACTTAAAGCTTCAAACTCTGCATTATCTTGTCAATGTGAAACAACAGTCAATAAAGGAGACAAAGTTACAA

Function

NR:

description
glycogen phosphorylase, muscle form

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00688 PYG, glgP; glycogen phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958152.1 True 4524 mRNA 0.49 20 53009558 53024732

Neighbor

gene id symbol gene type direction distance location
LOC110500705 NA coding downstream 131 53008693 ~ 53009427 (-)
LOC110500704 LOC106608596 coding downstream 3235 53001655 ~ 53006323 (-)
LOC110500886 LOC106608597 coding downstream 12219 52989323 ~ 52997339 (-)
LOC118942792 NA coding downstream 52702 52954794 ~ 52956856 (-)
LOC110500698 rasgrp2 coding downstream 55384 52888820 ~ 52954174 (-)
sf1 LOC106608594 coding upstream 3847 53028579 ~ 53041107 (-)
LOC118943021 NA coding upstream 7974 53032706 ~ 53032837 (-)
LOC110500707 LOC106608593 coding upstream 26092 53050824 ~ 53059769 (-)
LOC110500709 LOC106608590 coding upstream 43133 53067865 ~ 53094159 (-)
LOC110500710 LOC106608591 coding upstream 69581 53094313 ~ 53103236 (-)
G1752111 NA non-coding downstream 25401 52981286 ~ 52984157 (-)
G1752104 NA non-coding downstream 33763 52975561 ~ 52975795 (-)
G1752091 NA non-coding downstream 34493 52974338 ~ 52975065 (-)
G1752122 NA non-coding upstream 3234 53027966 ~ 53028168 (-)
G1752123 NA non-coding upstream 18276 53043008 ~ 53043251 (-)
G1752089 NA non-coding upstream 134942 53159674 ~ 53160072 (-)
LOC110500716 NA non-coding upstream 136198 53160930 ~ 53164050 (-)
G1752191 NA non-coding upstream 236209 53260941 ~ 53261633 (-)
G1751128 NA other downstream 881240 52127998 ~ 52128318 (-)
c21h11orf68 cssa07h11orf68 other downstream 1508345 51485700 ~ 51501323 (-)
G1750625 NA other downstream 1772395 51236885 ~ 51237163 (-)
LOC110500668 trmt44 other downstream 1960470 51036609 ~ 51051426 (-)
G1749122 LOC106608652 other downstream 2457033 50542435 ~ 50552525 (-)
LOC110500888 peli3 other upstream 349937 53370137 ~ 53405755 (-)
G1752268 NA other upstream 393668 53418400 ~ 53419325 (-)
G1752321 LOC103370121 other upstream 478187 53502919 ~ 53505011 (-)
G1753637 NA other upstream 1006850 54031582 ~ 54032306 (-)
G1754055 NA other upstream 1818333 54843065 ~ 54849083 (-)

Expression


Co-expression Network