sf1 (LOC106608594)


Basic Information

Item Value
gene id sf1
gene name LOC106608594
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 53028579 ~ 53041107 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958154.1
GTCAGACTTCGGTCAGAAAAAAGCCAGGAAAAGGAGCCGCTGGAATAGTGAAACACCCGACCAGAAGACAGTCATTCCTGGTATGCCCACCGTCATCCCGCCTGGACTGACTCGGGATCAGGAGAAGGCCTATATAGatCCCCGTCTCCAGAGCCCATCTATAACAGCGAGGGCAAGAGGCTGAACACCAGGGAGTACCGCACACGCAAGAAGATCGAGGAGGAGCGTCATTCCCTCATCACCGATATGGTGGCACTCAACCCTGAGTTCAAGCCCCCCGCTGACTACAAGCCCCCAGCTACCAGAGTCAACGACAAGGTGATGATTCCACAGGACGAGTACCCAGAGATCAACTTTGTTGGCCTGCTGATTGGACCGCGTGGCAACACCCTGAAGAACATAGAGAAGGAGTGCTGTGCCAAGATCATGATCCGTGGTAAGGGCTCGGTAAAGGAGGGCAAGGTGGGCCGTAAGGATGGCCAAATGCTGCCAGGGGAGGACGAGCCACTGCACGCCCTGGTCACCGCCAACACCATGGAGAACGTCAAGAAGGCTGTGGAACAGATCCGCACCATCCTCAAGCAGGGCATCGAGACCCCTGAGGACCAGAACGACTTGAGGAAGATGCAGCTGAGAGAGCTGGCCAGACTCAACGGAACCCTGAGAGAGGACGACAACAGGATCCTACGTCCGTGGCAGAGCACTGAACCCCGCAGCGTCACCAACACCACCCTTTGTACCAAGTGTGGCGGTGCAGGCCACATCTCCTCAGACTGCAAGTTCACCAGctcctttGCTGCGCCCAGGGCCGGTGAGCCCCCCCAGTCTGCCCAGGACAAGGCACGTATGGACAAGGAATACCTGTCCCTCATGGCGGAGCTGGGCGAGGCCCCTGTACCCTCTTCTGGTGGGGGACACTCCAACAATCAGAACAGCGGCCACAACAGAGGCAGCAACAACCAGCCACCGCCGAGCCGTCCTCCCTGGATGAACTCTGGCCAGTCTGAGAACAGGAACTTCCACAGCATGCACGGAGGCCACGGTGGTCATGGCAACCAACACGGTGGTCATGGCAACCACGGGGGTCATGGAGGTCACGGAGGCCACCACAACTTCCCACCCCCCATGTCCAACATGGGAGGACACCCCATGCCCCCCAACAACGGTATGCCACCCCCGTGGATGCAGCCCCCACCGCCCCCCATGGGCCAGGGACACGGACACCATATGGGTCTGTTGCCTCCACccatgatgccaccaccacctccacccccaAACAACCAGCCTCCCCCTCCACCCTCGGGTCCCCTGCCTCCATGGCAACAGCAGGCCCCTCCGCCCCCTCCCACCAGCAGCATGGCCACTAGTGCACCACTGCCATGGCAACAGAATACGACCACAACGTCCAGTCCTGGCACTGGCAACCTGCCCCCCTGGCAGCAGCCCCAACAGTCCGCTGCCTCGGCTGCCCAGCCCCCTCCCCCCATGGGCAACCCCTCCATGGTCCCACCTCCGCCCGGAGTccagccccctctcccccccggtgccccacctccccctcctcccccaccccccgGCTCGGCCGGCATGATGTatgcccctccacctccccctccgcCCATGGATCCCTCCAACTTTGTCACCATGATGGGAATGGGGGTGCCAGGCATGCCCCCCTTCGGTATGCCCCCTGCGCCTCCACCGCCACCCCCCCAAAATTAAACACCCACTGAACCTTCTTAAACACAGTCCTGCTTAGCATGCAGAGAAACTCCTCAAACAAGAGGGAGGTGGTGTGGTTGAATTTGTACATTTGCTTAACTTAATGTTTCTGTTAAAGTTGGTGTGTTTGATCACTCTATacgttctgttttttttttgtgtgttttgttttaggcattttttttattttccaggGTTTACTCCCTCCATGATTGGTTTATGACTCACTTTGCATACCAAATAACCCACCTCAGACATGTATATGCTTTGGTTTGCCGACTGGACTATGAATGTCCTATTCTCATTCCTTAGTTCTACCTAAAAGTATAACTAGTGTGTTTTTCTGGGTTATAACAGGCTTATAAGCTGTTTGATGGATATTTACCTTGGAAACATTGGTTATGGGGTGATCTATTAAAGTTGAGCTCAAGCTTAGTCGTCATTTTGTCTTCATCTACAGGACATTTTACTGTTCAGATTATCCAGCCAATTTTGTAGGCATGGTAGTCCAAATGGCTTCGGCCTTCATTCATCATCATGTTCCATTCGCTTGCTATTGGTTTCACTGAGCTGAATATTTTTCTGCTGTTTTTCTAATTGAACCCGATGTGAAGTGTAATTGCTCAAATTTCTTGGACTTCGCATCTCCCTCTTGATTATTTTGTCTGAAAAACGGGTCTTTAGtactgtttattatttttatttttttaaagaaaacaaccTGTGCATTTCAGCAGTTTCTGGTGCGCTTTTTCCCAAGACAGTTAATTTAGGTCCATGTGGATGCAGCAGGGAATAGGATTTTGCATCCTACAGCTGATTGGCTTAAGAGCTGCTCTGAGCAACTTAAATTCTAAGGAAGTCTGATTGGATGCTTACTTGTTTTGTTAACAACCTTTCCCCTCCATGCTTGTATTGCTTCAGCAAAATCACAACCCTATTTCAGTTCCCTTTAGTTACTTGAGTTCATGAGGAAAAAAATAAACTGTTAGATGACATTATACAATTGTAATTTTTACTCTATTTTTGGAAATGGTTTGTCAGCCTTGTGTTGGGTCTAGCCTGAATTAATAGTCCTTGCAATGTCGCTTGATTGTTTATTAAACTCATCTTTAACTAA
>XM_036958153.1
TCGGTATACTCCTTTGCGATATTTCGCTGTGCGCCATTTTATGTTCCCCAGCTCGAGTGGAGAAGGTTGTGGATGTCGTTCAATGTAATATTTGTTTATCTATTTACAAGCGTTGGTAACCTACTTTAATTTGATACAACAGAGCACCTTTGGAAATGGCTACGGGAGCGAATGCAACCCCTCTAGGGAAGCTGCACCCGAGTATCGGCGCTAAACGAGGTTTTGATGCTGGGCCTGGTGCGGGGTTAATGCCTCCACCCGGGCCTCCTGTGGCCTTTCCTTCGATACCGAATTTTCAGCCACCAATTCCCAACGTGTCTTTCCCGCAAGCTCACCCGGTGTTTACTGCGGTGGCTGCTTTTCCCACCCCACCACAACCACCCCAAGGTGCCGGAATGCAGCCCCAGTCAGACTTCGGTCAGAAAAAAGCCAGGAAAAGGAGCCGCTGGAATAGTGAAACACCCGACCAGAAGACAGTCATTCCTGGTATGCCCACCGTCATCCCGCCTGGACTGACTCGGGATCAGGAGAAGGCCTATATAGTCCAACTGCAGATTGAAGACCTGACTCGTAAACTGCGTACAGGAGACCTGGGAATCCCTGTTAACCCTGAGGACAGatCCCCGTCTCCAGAGCCCATCTATAACAGCGAGGGCAAGAGGCTGAACACCAGGGAGTACCGCACACGCAAGAAGATCGAGGAGGAGCGTCATTCCCTCATCACCGATATGGTGGCACTCAACCCTGAGTTCAAGCCCCCCGCTGACTACAAGCCCCCAGCTACCAGAGTCAACGACAAGGTGATGATTCCACAGGACGAGTACCCAGAGATCAACTTTGTTGGCCTGCTGATTGGACCGCGTGGCAACACCCTGAAGAACATAGAGAAGGAGTGCTGTGCCAAGATCATGATCCGTGGTAAGGGCTCGGTAAAGGAGGGCAAGGTGGGCCGTAAGGATGGCCAAATGCTGCCAGGGGAGGACGAGCCACTGCACGCCCTGGTCACCGCCAACACCATGGAGAACGTCAAGAAGGCTGTGGAACAGATCCGCACCATCCTCAAGCAGGGCATCGAGACCCCTGAGGACCAGAACGACTTGAGGAAGATGCAGCTGAGAGAGCTGGCCAGACTCAACGGAACCCTGAGAGAGGACGACAACAGGATCCTACGTCCGTGGCAGAGCACTGAACCCCGCAGCGTCACCAACACCACCCTTTGTACCAAGTGTGGCGGTGCAGGCCACATCTCCTCAGACTGCAAGTTCACCAGctcctttGCTGCGCCCAGGGCCGGTGAGCCCCCCCAGTCTGCCCAGGACAAGGCACGTATGGACAAGGAATACCTGTCCCTCATGGCGGAGCTGGGCGAGGCCCCTGTACCCTCTTCTGGTGGGGGACACTCCAACAATCAGAACAGCGGCCACAACAGAGGCAGCAACAACCAGCCACCGCCGAGCCGTCCTCCCTGGATGAACTCTGGCCAGTCTGAGAACAGGAACTTCCACAGCATGCACGGAGGCCACGGTGGTCATGGCAACCAACACGGTGGTCATGGCAACCACGGGGGTCATGGAGGTCACGGAGGCCACCACAACTTCCCACCCCCCATGTCCAACATGGGAGGACACCCCATGCCCCCCAACAACGGTATGCCACCCCCGTGGATGCAGCCCCCACCGCCCCCCATGGGCCAGGGACACGGACACCATATGGGTCTGTTGCCTCCACccatgatgccaccaccacctccacccccaAACAACCAGCCTCCCCCTCCACCCTCGGGTCCCCTGCCTCCATGGCAACAGCAGGCCCCTCCGCCCCCTCCCACCAGCAGCATGGCCACTAGTGCACCACTGCCATGGCAACAGAATACGACCACAACGTCCAGTCCTGGCACTGGCAACCTGCCCCCCTGGCAGCAGCCCCAACAGTCCGCTGCCTCGGCTGCCCAGCCCCCTCCCCCCATGGGCAACCCCTCCATGGTCCCACCTCCGCCCGGAGTccagccccctctcccccccggtgccccacctccccctcctcccccaccccccgGCTCGGCCGGCATGATGTatgcccctccacctccccctccgcCCATGGATCCCTCCAACTTTGTCACCATGATGGGAATGGGGGTGCCAGGCATGCCCCCCTTCGGTATGCCCCCTGCGCCTCCACCGCCACCCCCCCAAAATTAAACACCCACTGAACCTTCTTAAACACAGTCCTGCTTAGCATGCAGAGAAACTCCTCAAACAAGAGGGAGGTGGTGTGGTTGAATTTGTACATTTGCTTAACTTAATGTTTCTGTTAAAGTTGGTGTGTTTGATCACTCTATacgttctgttttttttttgtgtgttttgttttaggcattttttttattttccaggGTTTACTCCCTCCATGATTGGTTTATGACTCACTTTGCATACCAAATAACCCACCTCAGACATGTATATGCTTTGGTTTGCCGACTGGACTATGAATGTCCTATTCTCATTCCTTAGTTCTACCTAAAAGTATAACTAGTGTGTTTTTCTGGGTTATAACAGGCTTATAAGCTGTTTGATGGATATTTACCTTGGAAACATTGGTTATGGGGTGATCTATTAAAGTTGAGCTCAAGCTTAGTCGTCATTTTGTCTTCATCTACAGGACATTTTACTGTTCAGATTATCCAGCCAATTTTGTAGGCATGGTAGTCCAAATGGCTTCGGCCTTCATTCATCATCATGTTCCATTCGCTTGCTATTGGTTTCACTGAGCTGAATATTTTTCTGCTGTTTTTCTAATTGAACCCGATGTGAAGTGTAATTGCTCAAATTTCTTGGACTTCGCATCTCCCTCTTGATTATTTTGTCTGAAAAACGGGTCTTTAGtactgtttattatttttatttttttaaagaaaacaaccTGTGCATTTCAGCAGTTTCTGGTGCGCTTTTTCCCAAGACAGTTAATTTAGGTCCATGTGGATGCAGCAGGGAATAGGATTTTGCATCCTACAGCTGATTGGCTTAAGAGCTGCTCTGAGCAACTTAAATTCTAAGGAAGTCTGATTGGATGCTTACTTGTTTTGTTAACAACCTTTCCCCTCCATGCTTGTATTGCTTCAGCAAAATCACAACCCTATTTCAGTTCCCTTTAGTTACTTGAGTTCATGAGGAAAAAAATAAACTGTTAGATGACATTATACAATTGTAATTTTTACTCTATTTTTGGAAATGGTTTGTCAGCCTTGTGTTGGGTCTAGCCTGAATTAATAGTCCTTGCAATGTCGCTTGATTGTTTATTAAACTCATCTTTAACTAA

Function

NR:

description
splicing factor 1-like

GO: NA

KEGG:

id description
K13095 SF1; splicing factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958154.1 False 2842 mRNA 0.52 10 53028579 53040276
XM_036958153.1 True 3324 mRNA 0.52 12 53028579 53041107

Neighbor

gene id symbol gene type direction distance location
LOC110500703 LOC106608595 coding downstream 3847 53009558 ~ 53024732 (-)
LOC110500705 NA coding downstream 19152 53008693 ~ 53009427 (-)
LOC110500704 LOC106608596 coding downstream 22256 53001655 ~ 53006323 (-)
LOC110500886 LOC106608597 coding downstream 31240 52989323 ~ 52997339 (-)
LOC118942792 NA coding downstream 71723 52954794 ~ 52956856 (-)
LOC110500707 LOC106608593 coding upstream 9717 53050824 ~ 53059769 (-)
LOC110500709 LOC106608590 coding upstream 26758 53067865 ~ 53094159 (-)
LOC110500710 LOC106608591 coding upstream 53206 53094313 ~ 53103236 (-)
si:dkey-106g10.7 LOC106608588 coding upstream 99626 53140733 ~ 53148064 (-)
LOC110500716 NA coding upstream 120209 53160930 ~ 53164050 (-)
G1752122 NA non-coding downstream 411 53027966 ~ 53028168 (-)
G1752111 NA non-coding downstream 44422 52981286 ~ 52984157 (-)
G1752104 NA non-coding downstream 52784 52975561 ~ 52975795 (-)
G1752123 NA non-coding upstream 1901 53043008 ~ 53043251 (-)
G1752089 NA non-coding upstream 118567 53159674 ~ 53160072 (-)
G1752191 NA non-coding upstream 219834 53260941 ~ 53261633 (-)
G1752193 NA non-coding upstream 222676 53263783 ~ 53264046 (-)
G1751128 NA other downstream 900261 52127998 ~ 52128318 (-)
c21h11orf68 cssa07h11orf68 other downstream 1527366 51485700 ~ 51501323 (-)
G1750625 NA other downstream 1791416 51236885 ~ 51237163 (-)
LOC110500668 trmt44 other downstream 1979491 51036609 ~ 51051426 (-)
G1749122 LOC106608652 other downstream 2476054 50542435 ~ 50552525 (-)
LOC110500888 peli3 other upstream 333562 53370137 ~ 53405755 (-)
G1752268 NA other upstream 377293 53418400 ~ 53419325 (-)
G1752321 LOC103370121 other upstream 461812 53502919 ~ 53505011 (-)
G1753637 NA other upstream 990475 54031582 ~ 54032306 (-)
G1754055 NA other upstream 1801958 54843065 ~ 54849083 (-)

Expression


Co-expression Network