LOC110500722


Basic Information

Item Value
gene id LOC110500722
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 53251413 ~ 53256660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470151.2
GTGCGCGAGTTAAACTTAGTGACTATGTGGCTGAAGATGTCTGCTCCCGGTTTAGGGAAGCCACACAGGTACACAATGAAGCAGTTAAATCAATTGAGATTGTTCGATGTCGTTAGTGTGGCCAGAAGCGTATCTATATTTTTAAACTAAGAGGCACAATCTCTAAGCCAAAGAGATTCGCTGCTGAAATGTCCAACCGATGTGGAGAACAAGCCTCCAAGGACGTTCATTCGCAGATACGGACGAACCCCCGCTCGCTGGTTCTAGCTGTGAAGAGGGCGAACCGGATGAGTCCGAGCCATCCACTTCTAccgatgatgacagctccctggGTGGACAAGAACAGGTGGTCGCACCAGGTTTAGCCACACCTCCAAACAATGCTGGCAGAGACCCTACTATCTGCGACCCGGACTCAGTTTCGTCGCGATATGAATGGATCTTTACGGGATATGTTAGTGCAGGCTGGGCCATATCAGGATACGGTAGGGAATTTCCCAAGAGATGAGATGCAACGAAAATGTTCGGTGGCCAACTACAAATGAGGATGGCGAacggggagagagtggagagaccaTGGCTCGTTAATTCCAAGCAAAATGATGCGGCCTTCTATTTTTGCTGTTTTTCACGAGGGCAAATCTGCGCTGGTCATGGATGGAACCAGGGACTGGGAAGAATCTGTGCCACCTCCTCAGCTCGCATGAGAAGTCGCATGACCGCTTTGATAGTATCCAGAGGTGGAAGGAGCTGGAGATCAGGCTGGTGTCCAAGCAAGCTATCGATGCCCAAGCCCAACGGGCTATTGACAGAGAGACTCTCCATTGGAAgaccatggacagctacCGAGAGAAAACATCGCTGACTGCAATGCAGCATCACAGCAGAGGGAAGAGACCACTCTAGGCGGGCCACGAATTGAAGAAATGCTGAAATGTATGTTGGACAATCAAATTCGGTGGCTTTGCTGGGTCTCCAGTCCAACTGTAAGATTGCTTCCCTCCTGCAATAGTTTGTACATGTCATCAGTGGGgcTATTGAGCGAGTCATATACCCTTACCTGCAAGCTGTCCTGGATGACTACTCTGTCTCCAATGCCCAGGTGAAAGCAGACAGACACAAGGTCTATGGAGCAATCCTGGTGGCAGTGGAGCACCTGCTAAAGATTAgagccctgtctctgtccctgccaGCAGAGGGGGCACCCAGCCACACTTCAGGAGTGTGATTTCCGCCGGGCTCAGCCTCTCTCCGAGGCCACCCTGGGCATCGCCAGTCCCCTGCAGGGACCTGGGGGAGCTGGAACCCCCTGGAATGACTGGACCACATCCCCCTGCCCGTCATGTACTGTGAGCAGGTGGTTAAGAgggttgggctagtaaccaaaaggttgttggTTCGAATcaccgagccgacaaggtgaaattTTCTGTCTGTGCCTTTGAGCAAGACACTCAAGTCTAATTGCACCTGTAAAGCACAGCTGTCGctattttatattatttataaATATTTAATTTAGTTGCATATATTATTAAGTTGCAAACAATAACTGTACAATTTACAATGCACTTCTCTGTGCAAACAGGTAATTACTTTCTATCATCTTACACATTGTCCTTGGGATTGGTGGACAGTCAAACTGAAAGGAAGCAACTTCTATTGCTTAGGGATGGATCGACATTTACATAATGGGTACCTGAtggaaaatgttttaatatttCAGTCGAGgggtttcatttaaaaaaaaatctagtccaggggagggtcatgtcatttatgaaatgtcaatatttctcagttgtttattaggctatatatacaca
>TU2005860
ACAAGAACAGGTGGTCGCACCAGGTTTAGCCACACCTCCAAACAATGCTGGCAGAGACCCTACTATCTGCGACCCGGACTCAGTTTCGTCGCGATATGAATGGATCTTTACGGGATATGTTAGTGCAGGCTGGGCCATATCAGGATACGGTAGGGAATTTCCCAAGAGATGAGATGCAACGAAAATGTTCGGTGGCCAACTACAAATGAGGATGGCGAacggggagagagtggagagaccaTGGCTCGTTAATTCCAAGCAAAATGATGCGGCCTTCTATTTTTGCTGTTTTTCACGAGGGCAAATCTGCGCTGGTCATGGATGGAACCAGGGACTGGGAAGAATCTGTGCCACCTCCTCAGCTCGCATGAGAAGTCGCATGACCGCTTTGATAGTATCCAGAGGTGGAAGGAGCTGGAGATCAGGCTGGTGTCCAAGCAAGCTATCGATGCCCAAGCCCAACGGGCTATTGACAGAGAGACTCTCCATTGGAAgaccatggacagctacCGAGAGAAAACATCGCTGACTGCAATGCAGCATCACAGCAGAGGGAAGAGACCACTCTAGGCGGGCCACGAATTGAAGAAATGCTGAAATGTATGTTGGACAATCAAATTCGGTGGCTTTGCTGGGTCTCCAGTCCAACTGTAAGATTGCTTCCCTCCTGCAATAGTTTGTACATGTCATCAGTGGGgcTATTGAGCGAGTCATATACCCTTACCTGCAAGCTGTCCTGGATGACTACTCTGTCTCCAATGCCCAGGTGAAAGCAGACAGACACAAGGTCTATGGAGCAATCCTGGTGGCAGTGGAGCACCTGCTAAAGATTAgagccctgtctctgtccctgccaGCAGAGGGGGCACCCAGCCACACTTCAGGAGTGTGATTTCCGCCGGGCTCAGCCTCTCTCCGAGGCCACCCTGGGCATCGCCAGTCCCCTGCAGGGACCTGGGGGAGCTGGAACCCCCTGGAATGACTGGACCACATCCCCCTGCCCGTCATGTACTGTGAGCAGGTGGTTAAGAgggttgggctagtaaccaaaaggttgttggTTCGAATcaccgagccgacaaggtgaaattTTCTGTCTGTGCCTTTGAGCAAGACACTCAAGTCTAATTGCACCTGTAAAGCACAGCTGTCGctattttatattatttataaATATTTAATTTAGTTGCATATATTATTAAGTTGCAAACAATAACTGTACAATTTACAATGCACTTCTCTGTGCAAACAGGTAATTACTTTCTATCATCTTACACATTGTCCTTGGGATTGGTGGACAGTCAAACTGAAAGGAAGCAACTTCTATTGCTTAGGGATGGATCGACATTTACATAATGGGTACCTGAtggaaaatgttttaatatttCAGTCGAGgggtttcatttaaaaaaaaatctagtccaggggagg
>TU2005861
CATGGAGGATTAACTATGTATTCTACAGGTGGCTTTGCTGGGTCTCCAGTCCAACTGTAAGATTGCTTCCCTCCTGCAATAGTTTGTACATGTCATCAGTGGGgcTATTGAGCGAGTCATATACCCTTACCTGCAAGCTGTCCTGGATGACTACTCTGTCTCCAATGCCCAGGTGAAAGCAGACAGACACAAGGTCTATGGAGCAATCCTGGTGGCAGTGGAGCACCTGCTAAAGATTAgagccctgtctctgtccctgccaGCAGAGGGGGCACCCAGCCACACTTCAGGAGTGTGATTTCCGCCGGGCTCAGCCTCTCTCCGAGGCCACCCTGGGCATCGCCAGTCCCCTGCAGGGACCTGGGGGAGCTGGAACCCCCTGGAATGACTGGACCACATCCCCCTGCCCGTCATGTACTGTGAGCAGGTGGTTAAGAgggttgggctagtaaccaaaaggttgttggTTCGAATcaccgagccgacaaggtgaaattTTCTGTCTGTGCCTTTGAGCAAGACACTCAAGTCTAATTGCACCTGTAAAGCACAGCTGTCGctattttatattatttataaATATTTAATTTAGTTGCATATATTATTAAGTTGCAAACAATAACTGTACAATTTACAATGCACTTCTCTGTGCAAACAGGTAATTACTTTCTATCATCTTACACATTGTCCTTGGGATTGGTGGACAGTCAAACTGAAAGGAAGCAACTTCTATTGCTTAGGGATGGATCGACATTTACATAATGGGTACCTGAtggaaaatgttttaatatttCAGTCGAGgggtttcatttaaaaaaaaatctagtccaggggagg

Function

NR:

description
PREDICTED: TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470151.2 False 1826 mRNA 0.48 5 53251413 53256660
TU2005860 False 1431 TUCP 0.49 5 53251749 53256601
TU2005861 True 837 lncRNA 0.47 3 53254510 53256601

Neighbor

gene id symbol gene type direction distance location
cth1 LOC106608603 coding upstream 755 53248674 ~ 53250658 (+)
LOC110500719 LOC106608586 coding upstream 6234 53215229 ~ 53245179 (+)
LOC110500717 LOC106608585 coding upstream 36430 53164111 ~ 53214983 (+)
si:dkey-28a3.2 LOC106608587 coding upstream 92121 53148819 ~ 53159292 (+)
LOC110500711 LOC106608589 coding upstream 111977 53105557 ~ 53139436 (+)
LOC110500887 LOC106608584 coding downstream 11853 53268513 ~ 53330654 (+)
si:ch73-40a2.1 LOC106608602 coding downstream 79256 53335916 ~ 53347700 (+)
rab1ba LOC100695098 coding downstream 91853 53348513 ~ 53367113 (+)
LOC110500724 LOC106608582 coding downstream 149386 53406046 ~ 53418358 (+)
LOC110500725 LOC106608581 coding downstream 243463 53500123 ~ 53505026 (+)
G1751821 NA non-coding upstream 90589 53160568 ~ 53160824 (+)
G1751787 NA non-coding upstream 112953 53092517 ~ 53138460 (+)
G1751792 LOC106608591 non-coding upstream 152002 53098749 ~ 53099411 (+)
G1751766 NA non-coding upstream 188931 53061348 ~ 53062482 (+)
G1751865 NA non-coding downstream 3705 53260365 ~ 53260708 (+)
G1751863 NA non-coding downstream 9625 53266285 ~ 53266800 (+)
G1751883 NA non-coding downstream 30530 53287190 ~ 53287487 (+)
G1751905 NA non-coding downstream 98758 53355418 ~ 53356897 (+)
G1751906 NA non-coding downstream 101068 53357728 ~ 53360510 (+)
G1751699 LOC106608599 other upstream 279030 52962449 ~ 52972383 (+)
G1750050 NA other upstream 1054406 52191200 ~ 52197007 (+)
G1750030 LOC106608688 other upstream 1156308 52094709 ~ 52095105 (+)
G1750012 NA other upstream 1172411 52071600 ~ 52079002 (+)
G1749650 NA other upstream 1800938 51418969 ~ 51450475 (+)
LOC110500735 ablim2 other downstream 950038 54206483 ~ 54342581 (+)
G1753100 NA other downstream 1744919 55001579 ~ 55011678 (+)
LOC110500754 LOC106591080 other downstream 2333945 55590450 ~ 55592100 (+)
G1755158 NA other downstream 3129747 56386407 ~ 56387622 (+)
G1755570 NA other downstream 3537071 56793731 ~ 56794574 (+)

Expression


Co-expression Network