sstr1b (sstr1a)


Basic Information

Item Value
gene id sstr1b
gene name sstr1a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 53535613 ~ 53551723 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124534.1
TTCTATAATTAGAAATCCCTGGGAAACATGAGAACTGAGAGAGACTCAAGGACTCTGATTTATTTCAGATTAACCCCATCTATGGACCCTGAGATAAGAGAATAACATTGTACAGATATTACATTCTCTTCAGAGCCGCACCTACAGTATACAAAGAATGAGGATCTCCCCTGCTCCTGctgctccttcctccctcctttttgACCCCTTCCTTTAAAGGAGTTTAACAGAGACCCATGGTACTGTACACTAAAGCAACACTTTGGCGATAACGAAGAGCCAGCTAAGCACATTGAGAAGTGTACTATATTCTATAATGTGACATAGAGactcatagatttagccggtggtaacttgtgggaAAAGACACCGGttggaatgtggttttaaccaatcagcattcaggattagacccagcCGTTGTATAAAAAATGATATACACAAAGTCAGATCTTAACTCCCAGTAGGAGAAACCCAAAATTAAGGTAAACTGGACAAAATGGACAACATGGCCGCCAATGGGACCAGCAACTACCCAGCATACCCCACCGACTTCCCCTACAACTCCAGCCTAGACTATGAGGACTACGACCAGGAACCTGACACCAGCAAGATCATCATCCCCTCCATCTACGCCCTGGTCTGCTGCGTGGGTTTAACAGGCAACACCATGGTTATCTATGTTATCCTTAAGTACGCCAAGATGAAAACCGCCACCAATATTTATATATTGAATCTGGCCATTGCAGATGAACTCTTTATGTTGAGTGTGCCGTTTCTGGCGACATCGGCGGCTGTACGTCATTGGCCATTTGGCTCGCTCATGTGCCGTCTGGTGTTGAGCGTGGACGGCATTAACATGTTTACGTCCATCTTCTGTCTGACGGTGTTGAGCGTGGATCGATACGTGGCCGTGGTTCACCCTATCAAGGCTGCCCGCTACCGCCGACCGACTGTTGCCAAAGTAGTCAACGTCTGCGTGTGGGGCCTCTCGCTCCTCGTCATCCTCCCCATTATAATTTTTGCCGACACGGTCCCGGCGCAGGACGGCGGTGTGGACTGCAACTTTCTGTGGCCTGAGGCAGCGTGGTCGGAGGCGTTCGTGGTCTACACCTTCCTGCTCGGCTTCCTGCTTCCTGTGGGCGCAATCTGCCTCTGCTACTGCCTGATGGTGGCGCGCATGCGGGCGGTCGGGCTGAAAGCCGGTTGGCTGCAGCGGCGACGCTCTGAGAAAAAGATCACCcggatggtggtgtgtgtggtggcgGTTTTTGTCCTCTGCTGGATGCCTTTCTACATCGTCCAGCTGGTCAGCGTGTTCCACCACCCTCCCAACCCCATGGTCACCCAGCTCTTCGTCATCCTAAGTTATGCCAACAGCGGCGCCAACCCGATCCTCTATGGCTTTGTGTCGGATAACTTCCGCCGGTCGTTCCAGAGGATTGTGTGTTTCCGTTGGTTGGAGTCTGGGCTGGACTGTGAACAGGTGGACTACCGTGCTGTAGCCCTGAAGAGACAGGCCACCAATGGACAAAAAGATTTCCCTAAAGAATGTCTGGCATCTGATATGGTGTTCCGGAATGGAACATATACCTCACGCACTACTACATTGTGACAGGGACAAGGTGTTGTGGATGGAACCCCACACTGAGAGTGATAGGGAAGCAACGAATGACAACGGATAAAACCACACATgaacaatgatggaggccataAGGACCaattaaaaatatgaaataaattatGTTCTCTC
>XM_021576740.2
CGAGTGAGTGTGCAAGCCTCGatcctcagagagagaaagagagagcagagagcggtAGAGAACAGCAACACTGAGAAATTGTGAGTGCTATGGGTAAGTGGACTGTTAAAAGATAGCAGATAATGGACAAAGTGAGACGAAAGACAGTTCTCCACAGGTCTATCACATTtttatctatccatccatcctggagagggagaaggagagaacggaGGACTTGAACAGGCTGACTGGGATGGGACTCTGACAGTACTCAGTTACCTGGATACGGCTTCCTGGACTCAAAGAAAAATGGGGGTGTAGCAGGGAAGAGCTCAAACCAAAAGCCAGTGATTTACATGGACTTGTTCAGCCTGGGTGTAACGATGAAATAATCACCCCTCTatccacacagacacatggaATGGTGAGGGTGCAGAATTCACCGCAACACTTCTTACCACAAACCACTCCTGAGTGTGCCATTGGACcagacagaacagggcagaaAAACTCTAAACCACTCCTGAATTCTCTCCAACAGGACATTGTAATCAATCAGAAGGAATGTTCTCCCTTGGCCAAGTTTTGAGTGATACCCAGAAACCTTGCctgattttaattaaagaaaatACTCCTAAGAACCACTTACAAACGGATGGGTAATAAGATGTGAGTTTATTTGTGAATGAATATGGAATGTTAAGCGTTTGGCTGCCAAGAATTCATTGTTTCAGCCTCCTAAATTGCTTCAGTGCCCTTATCGGTTAGTTGAGAAGCTGGGTTCTATAATTAGAAATCCCTGGGAAACATGAGAACTGAGAGAGACTCAAGGACTCTGATTTATTTCAGATTAACCCCATCTATGGACCCTGAGATAAGAGAATAACATTGTACAGATATTACATTCTCTTCAGAGCCGCACCTACAGTATACAAAGAATGAGGATCTCCCCTGCTCCTGctgctccttcctccctcctttttgACCCCTTCCTTTAAAGGAGTTTAACAGAGACCCATGGTACTGTACACTAAAGCAACACTTTGGCGATAACGAAGAGCCAGCTAAGCACATTGAGAAGTGTACTATATTCTATAATGTGACATAGAGactcatagatttagccggtggtaacttgtgggaAAAGACACCGGttggaatgtggttttaaccaatcagcattcaggattagacccagcCGTTGTATAAAAAATGATATACACAAAGTCAGATCTTAACTCCCAGTAGGAGAAACCCAAAATTAAGGTAAACTGGACAAAATGGACAACATGGCCGCCAATGGGACCAGCAACTACCCAGCATACCCCACCGACTTCCCCTACAACTCCAGCCTAGACTATGAGGACTACGACCAGGAACCTGACACCAGCAAGATCATCATCCCCTCCATCTACGCCCTGGTCTGCTGCGTGGGTTTAACAGGCAACACCATGGTTATCTATGTTATCCTTAAGTACGCCAAGATGAAAACCGCCACCAATATTTATATATTGAATCTGGCCATTGCAGATGAACTCTTTATGTTGAGTGTGCCGTTTCTGGCGACATCGGCGGCTGTACGTCATTGGCCATTTGGCTCGCTCATGTGCCGTCTGGTGTTGAGCGTGGACGGCATTAACATGTTTACGTCCATCTTCTGTCTGACGGTGTTGAGCGTGGATCGATACGTGGCCGTGGTTCACCCTATCAAGGCTGCCCGCTACCGCCGACCGACTGTTGCCAAAGTAGTCAACGTCTGCGTGTGGGGCCTCTCGCTCCTCGTCATCCTCCCCATTATAATTTTTGCCGACACGGTCCCGGCGCAGGACGGCGGTGTGGACTGCAACTTTCTGTGGCCTGAGGCAGCGTGGTCGGAGGCGTTCGTGGTCTACACCTTCCTGCTCGGCTTCCTGCTTCCTGTGGGCGCAATCTGCCTCTGCTACTGCCTGATGGTGGCGCGCATGCGGGCGGTCGGGCTGAAAGCCGGTTGGCTGCAGCGGCGACGCTCTGAGAAAAAGATCACCcggatggtggtgtgtgtggtggcgGTTTTTGTCCTCTGCTGGATGCCTTTCTACATCGTCCAGCTGGTCAGCGTGTTCCACCACCCTCCCAACCCCATGGTCACCCAGCTCTTCGTCATCCTAAGTTATGCCAACAGCGGCGCCAACCCGATCCTCTATGGCTTTGTGTCGGATAACTTCCGCCGGTCGTTCCAGAGGATTGTGTGTTTCCGTTGGTTGGAGTCTGGGCTGGACTGTGAACAGGTGGACTACCGTGCTGTAGCCCTGAAGAGACAGGCCACCAATGGACAAAAAGATTTCCCTAAAGAATGTCTGGCATCTGATATGGTGTTCCGGAATGGAACATATACCTCACGCACTACTACATTGTGACAGGGACAAGGTGTTGTGGATGGAACCCCACACTGAGAGTGATAGGGAAGCAACGAATGACAACGGATAAAACCACACATgaacaatgatggaggccataAGGACCaattaaaaatatgaaataaattatGTTCTCTC
>TU2007620
gccaaagagagaaagagagagagagataaaggaataGAGACTTGAGGGATggtgagcgacagagagagagagagagagagagtgtgagaagaGCGAGTGAGTGTGCAAGCCTCGatcctcagagagagaaagagagagcagagagcggtAGAGAACAGCAACACTGAGAAATTGTGAGTGCTATGGGTAAGTGGACTGTTAAAAGATAGCAGATAATGGACAAAGTGAGACGAAAGACAGTTCTCCACAGGTCTATCACATTtttatctatccatccatcctggagagggagaaggagagaacggaGGACTTGAACAGGCTGACTGGGATGGGACTCTGACAGTACTCAGTTACCTGGATACGGCTTCCTGGACTCAAAGAAAAATGGGGGTGTAGCAGGGAAGAGCTCAAACCAAAAGCCAGTGATTTACATGGACTTGTTCAGCCTGGGTGTAACGATGAAATAATCACCCCTCTatccacacagacacatggaATGGTGAGGGTGCAGAATTCACCGCAACACTTCTTACCACAAACCACTCCTGAGTGTGCCATTGGACcagacagaacagggcagaaAAACTCTAAACCACTCCTGAATTCTCTCCAACAGGACATTGTAATCAATCAGAAGGAATGTTCTCCCTTGGCCAAGTTTTGAGTGATACCCAGAAACCTTGCct

Function

symbol description
sstr1a Predicted to enable neuropeptide binding activity and somatostatin receptor activity. Predicted to be involved in cellular response to estradiol stimulus and neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SSTR1 (somatostatin receptor 1).

NR:

description
PREDICTED: somatostatin receptor type 1-like

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0038170 somatostatin signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004994 somatostatin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124534.1 False 1753 mRNA 0.50 1 53535613 53537365
XM_021576740.2 False 2516 mRNA 0.48 2 53535613 53551630
TU2007620 True 686 lncRNA 0.47 2 53537536 53551723

Neighbor

gene id symbol gene type direction distance location
LOC110500888 peli3 coding downstream 129858 53370137 ~ 53405755 (-)
LOC110500716 NA coding downstream 371563 53160930 ~ 53164050 (-)
si:dkey-106g10.7 LOC106608588 coding downstream 387549 53140733 ~ 53148064 (-)
LOC110500710 LOC106608591 coding downstream 432377 53094313 ~ 53103236 (-)
LOC110500709 LOC106608590 coding downstream 441454 53067865 ~ 53094159 (-)
LOC110500726 LOC106608579 coding upstream 18535 53570165 ~ 53575953 (-)
LOC110500890 LOC100380644 coding upstream 339853 53891483 ~ 53985179 (-)
LOC110500728 LOC106608575 coding upstream 456824 54008454 ~ 54039871 (-)
LOC110500730 LOC106608572 coding upstream 521489 54073119 ~ 54184661 (-)
LOC110500734 NA coding upstream 643442 54195072 ~ 54196766 (-)
G1752319 NA non-coding downstream 41411 53493973 ~ 53494202 (-)
G1752314 NA non-coding downstream 46764 53488638 ~ 53488849 (-)
G1752309 NA non-coding downstream 56526 53478800 ~ 53479087 (-)
G1752307 NA non-coding downstream 58452 53476880 ~ 53477161 (-)
G1752302 NA non-coding downstream 64286 53470007 ~ 53471327 (-)
G1753491 NA non-coding upstream 187325 53738955 ~ 53740312 (-)
G1753622 NA non-coding upstream 451261 54002891 ~ 54003235 (-)
G1753639 NA non-coding upstream 481300 54032930 ~ 54033883 (-)
G1753647 NA non-coding upstream 494940 54046570 ~ 54046949 (-)
G1752321 LOC103370121 other downstream 30602 53502919 ~ 53505011 (-)
G1752268 NA other downstream 116288 53418400 ~ 53419325 (-)
G1751128 NA other downstream 1407295 52127998 ~ 52128318 (-)
c21h11orf68 cssa07h11orf68 other downstream 2034400 51485700 ~ 51501323 (-)
G1753637 NA other upstream 479952 54031582 ~ 54032306 (-)
G1754055 NA other upstream 1291435 54843065 ~ 54849083 (-)
LOC110500893 tada2b other upstream 1413546 54961826 ~ 54966157 (-)
LOC110500749 s100p other upstream 1555056 55106685 ~ 55107622 (-)
G1754243 NA other upstream 1720588 55272218 ~ 55273949 (-)

Expression


Co-expression Network