LOC110500726 (LOC106608579)


Basic Information

Item Value
gene id LOC110500726
gene name LOC106608579
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 53570165 ~ 53575953 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578250.2
ACTTCTCAAATCCACCACCCGTTTGCACGGAAATCTGCGCTTGAAACTCTTCTCTGTGGCGCATTGCTGGATGTCTTTCAGCATCTTCAGAACACAGTAGCTAGCCTGTTAGCTAGAGCTTCAAAAGATATGAGCCGCAAAAGAGACCACACTTTTACCGAAACAAGCCTTTCTCCCGACCCCAAAAACGCATTTATGGACACTCCGGTGTCTGCAGCGCGACCCGATGAAGATGTATTGGAATTCGAGCCCGACGAGGAGCTACTCTGCTCGGTGAGCGACATCACCGAACACCTTGGGAGAAACATAACAGTGGTGCTCGAGACTGCGTTGTCCGAAATCAGGAAAATGGTCAGCGTCAGGATACGGGTTCTGAAAATGGAGCTTCGGGAGAAAACGGACGAAATCGAAGTCTTAAAAACGAGACTAGAGGTGCAAATAGACGGTAGGGACCCGTATCATGGAGGAATGACCACCGAGGTTGCATCTGTATTCAGGAAAGCAGACTTCCATTCAGGAAGCAAACACAACAACAACGACCACAAGAAAGCCAAACCAGCCATGCCTGGTGTGAAGAAAGAAAACATCAATGCCATTTGCGACTATCTGATGAAAGATAAGAATTCACGGGGTGCTGAAACGGACAGCGACCCGAGCAATCCTTCTTCTGGTAGCGACAGGGACAGCCGCCACGATCCCCAGCCGCATTCCCTCAACCATCTGTGGCCGGACAGTGGCATTCCTGACGCGGGGCATGGGGACGGGGAATCGGACTCGGCCACGGATGACATATTTGACATGTCGCTACCATCAGGAAGCAAGCGGATCCACGACTATGAGTGGATGACTGGGGTGGAGTACACGTCGGATTTGAAAGGTATGAGGGAGCCTAAATCGGAGAGTGCCAAAACACCAGATGAGGAAGATGATGAAGAGGGTGACGAGTCAAAAGAAGAAAGGAATGATGGATTGGAGCatcccccagcccctctctcccATGACACAAACAGCCCCGACTTTCCCCTGCACCCCCAGGGCTCTCCAGGAGGGGAGGGGGACAGTTCTTTGGAGGCCCATGTGGATCGACTAGAACCggGTCAGCAGTTTACCTCCCACACATACCTCTGCCCACTGTGTGGAACCTTCTGCCCCGACTCCTTGTTCCTAGAGGAGCACCTCAAACTGATACACGGCGACACCACCGGCACCCACAGCGCCCTGCAGTCCACCTCCATTGCTCCCCTCTCTCTGGGAGAGGGTAGCAGTGACTCCAAGTGGGGGTTGGCGGGGCTTGAAGGAGGGAGCATTCCGTCTGGAGCTAGGGGGATGGGCCtagcaagaggaggaggagtcgggGGAGGAGTAGGGACGAGGGAGAAGAAAGTGGAAGGGGGTTACGAGTGTGGAGATTGCGGCCGCCATTTCAACTACCTGGGAAACCTGCGGCAGCACCAGCGCATTCACACGGGGGAGAAGCCCTTCATATGCCCAGAGTGTGGGGAGAAGTTCCGGCACGCTGCCCGATTGAAGAGTCACCGGCTGGGGCACAACGGAGGCCAGAGCCCCTTCCCCTGCCCCCAGTGTGGGAAGGGCTTCCCGGTGCTCTCCGGCTTAAAGAGACACCAGCGGGTACATACGGGGGAGAGTCCCTACGCGTGCCAGCAGTGTGGGCGGCGCTTCAAGGAGCTGGGTAACCTGTACACCCACCAGAGGATTCACAGTGGTGCCACACCCTACTGCTGCCAGCAGTGTGGGAGGAGCTTCCGCCACCTGGGCACCTACAAGAGCCACCGCTGCACCCCTACACAGTGACAGTGACATTCTACGCCGTTACCTTAAAGCTAGACTGGCTAACTGCTAAGTCTAGCCTAGCCATCACAGGAGCCTATTGATATGCTGTTAACTGAGGCAGGAACATTGTCTGAGTCTAAAGACAAGCCTCATATGGACTTAAAAGAGAGGGAGACTGTGCCATGATGAAGAAGAGGTCAAAGGGCATCCTGATGAAAGCCATGGCCTCGTTCAAATAGTACAAAACACATAATTCCCTCTTCGGCTCCCTTCCTTGAAGTAATCACtcatctaataataataattttaatttATATAGCGCTTTTCATTACAAACAAGAATCTCCAAGTTGCTTtgaaaacaaaaacatatgtaGGGATCTGGCAGTTCCTGTTTGATGGTCTTCCACAGCTTCAGATGTCTAGGCAGGTCAGAAAGGCAACTGGTAGCAGTAGCTTAAGTGGCAGGAGTGTCGATGATAAAGACAGGCATAGAGAAACATCAGTCAGATATTGGTAGACAGGCCTGGAGCTCTTCAtcagagagtcagggagaatCATCAGTCAGATACTGGTGGACAGGCCCAGAACTCTTCAtcagagagtcagggagaaacGTCAGTCAGATACTGGTAGACAGGCCTGGAGCTCTtcatcagagagggagaaacatCAGTCAGATACTGGTAGACAGGCCCGGAGACTCTTAAtcagagagtcagggagaaatGTCAGTCAGATACTGGTAGACAGGCCCGGAGCTCTTtatcagagagggagaaatgtcAGTCCGATACTGGTAGACAGGCTTGGAGACTCTTCAtcagagagtcagggagaaatGTCAGTCAGATACTGGTAGACAGGCCCAGAGCTCTtcatcagagagggagaaacGTCAGTCAGATACTGGTAGACAGGCCCAGAGCTCTTCAtcagagagtcagggagaaatGTCAGTCAGATACTGGTAGACAGGCCTGGAGCTCTtcatcagagagggagaaacGTCAGTCAGATACTGGTAGACAGGCCCAGAGCTCTTCAtcagagagtcagggagaaatGTCAGTCAGATACTGGTAGACAGGCCTGGAGCTCTtcatcagagagggagaaatgtcAGTCAGATACTGGTAGACAGGCCCAAAGCTCTtcatcagagagggagaaacGTCAGTCAGATACTGGTAGACAGGCCCAGAGCTCTTCAtcagagagtcagggagaaatGTCAGTCAGATACTGATAGACAGGCCCAGAGCTCTTCAtcagagagtcagggagaaatGTCAGTCAGATACTGGTAGACAGGCCTGGAGCTCTtcatcagagagggagaaacGTCAGTCAGATACTGGTAGACAGGCCCAGAGCTCTTCAtcagagagtcagggagaaatGTCAGTCAGATACTGGTAGACAGGCCTGGAGCTCTtcatcagagagggagaaacatCAGTCAGATACTGGTAGACAGGCCCAAAGCTCTtcatcagagagggagaaacGTCAGTCAGATACTGGTAGACAGGCCTGGAGCTCTtcatcagagagggagaaacGTCAGTCAGATACTGGTAGACAGGCCTGGAGCTCTtcatcagagagggagaaacGTCAGTCAGATACTGGTAGACAGGCCTGGAGCTCTTCATCGGtcacaaatgtatttataaagccctttttacatcagcagatgccacaaagtgcttatacagaaaccctgccgaaaaccccaaacagcaagcaatgcagatttagaagcacgtggctaggaaacactccctagaaaggcaggaacctagagaggaaccaggctcttctggctgtgccggttggagattataTTAGAATATATGTACATGGCCATTAAgaccagatcgttcttcaagatgttcagtcgttcatagatgaccagcagggtaaaataataatcacagtggttatagagggtgcaacaggtcagcacctcgggagtaaatgccagttgacttttcatagccgagcattaaGAGGCCGAGATAGcaggtgtgagagagggagtcaaAACAGCAGGTACGGGACGAGGTCAATTCGtcaacagttgaaactggatcagcagcacgactAGGTGGACTAGGGACCGGAACAGATAGAGACGTCGTCAgcccaggtagtcctgaggcatggtgcTAGGGATCCGGCCCTCTGTGATGGGAGAAAGAGCAAGAGGCATGTCGTCTCCTCTGTAAGTAGCTAGGCTGGATCATCCACTGTCAAAGAGTAacacccacctgggtgatgctTTGGTGGCTATAAAAGCACCAGAAAAGACCAACGCACCTCAACAATAGTCTGGAACAAGAGGTGAGTTTCTGCCATTCCCTCACACCGCAGTCCACATTCATATTTACAGAGCTCTCTGCTTAGGCGACCTCACGGCACCATGGCAACCCCGGAACTCTGACATGTCAGATCTGTGATTACTTTGaggaaggaaggatgcattttAGTAGTATAGCCTTTTGGGAAGAGGACGCACACTAACAGAACAGTGTGACTGCTGCCACCATGTGGACTTTCTATGTTACTGCACAAATGAAGCTTCATGGTGGCTCTGTCGAGGGCTGACTACGTTTTAACCTCACCTACCAATGACTTCTGTTCAGAGCAGATGAGTTGGCATTTTATCATTTGTAATAACTATGCTGTAACCTGTATTACTGACATTATATTCTTTACACGTTGTTGGTATGTCCACGTTGTTGGTATGTCCACCTGCATGATGATGATATGTAATTCGCTTTTGTGATCTGATATCAGTAATCTACCCCTTTTAAATTCACCCCTCGGTTAACAGGCTAGTTATCTACAGAGGTTCAGGAAAACGTTCATTTCAAGGGCAAAGATATACCAGTAAATAATGACCCCGCTTTTCTCTATTCACTCTAGTTGTTTAGCTAAAAGCAGTCAGGTGTTTAGAGAGTAGGGACATGGAGTTTtctgcattatgatgcatttacaAGACACTACCACGGTCATGTTAGCCCACCATTATTACAATATGGGGAATATTTCAATAATGCTATGCAAAGAACAATATTAAACATTCAAAAAgttgtcccatctctctctctatatatatatacacagtggggagaacaagtatttgatacactgccgattttgcaggttttcctacttacaaagcatgtagaggtctgtactttttatcataggtacacttcaactgtgagagacggaatctaaaacaaaaatccagaaaattacattgtatgatttttagaATACATGATtttacttgttctccccactgtatatgtatatatatatatatatatatatatatatggctggCTAAAAGTATTCCCAATATTGTATGTGAATGTTGAACACATAAAGAATCACCAACTTTTCAAACTGTTTCGGTAAACAATGAATATAAAAATGGTAGATGGAGAAATGCTAATCATTGGCCGGCTGCGTTCTAATAAACATTCTTATGCGG
>TU2007646
GCCGCCATTTCAACTACCTGGGAAACCTGCGGCAGCACCAGCGCATTCACACGGGGGAGAAGCCCTTCATATGCCCAGAGTGTGGGGAGAAGTTCCGGCACGCTGCCCGATTGAAGAGTCACCGGCTGGGGCACAACGGAGGCCAGAGCCCCTTCCCCTGCCCCCAGTGTGGGAAGGGCTTCCCGGTGCTCTCCGGCTTAAAGAGACACCAGCGGGTACATACGGGGGAGAGTCCCTACGCGTGCCAGCAGTGTGGGCGGCGCTTCAAGGAGCTGGGTAACCTGTACACCCACCAGAGGATTCACAGTGGTGCCACACCCTACTGCTGCCAGCAGTGTGGGAGGAGCTTCCGCCACCTGGGCACCTACAAGAGCCACCGCTGCACCCCTACACAGTGACAGTGACATTCTACGCCGTTACCTTAAAGCTAGACTGGCTAACTGCTAAGTCTAGCCTAGCCATCACAGGAGCCTATTGATATGCTGTTAACTGAGGCAGGAACATTGTCTGAGTCTAAAGACAAGCCTCATATGGACTTAAAAGAGAGGGAGACTGTGCCATGATGAAGAAGAGGTCAAAGGGCATCCTGATGAAAGCCATGGCCTCGTTCAAATAGTACAAAACACATAATTCCCTCTTCGGCTCCCTTCCTTGAAGTAATCACtcatctaataataataattttaatttATATAGCGCTTTTCATTACAAACAAGAATCTCCAAGTTGCTTtgaaaacaaaaacatatgtcaacagttgaaactggatcagcagcacgactAGGTGGACTAGGGACCGGAACAGATAGAGACGTCGTCAgcccaggtagtcctgaggcatggtgcTAGGGATCCGGCCCTCTGTGATGGGAGAAAGAGCAAGAGGCATGTCGTCTCCTCTGTAAGTAGCTAGGCTGGATCATCCACTGTCAAAGAGTAacacccacctgggtgatgctTTGGTGGCTATAAAAGCACCAGAAAAGACCAACGCACCTCAACAATAGTCTGGAACAAGAGGTGAGTTTCTGCCATTCCCTCACACCGCAGTCCACATTCATATTTACAGAGCTCTCTGCTTAGGCGACCTCACGGCACCATGGCAACCCCGGAACTCTGACATGTCAGATCTGTGATTACTTTGaggaaggaaggatgcattttAGTAGTATAGCCTTTTGGGAAGAGGACGCACACTAACAGAACAGTGTGACTGCTGCCACCATGTGGACTTTCTATGTTACTGCACAAATGAAGCTTCATGGTGGCTCTGTCGAGGGCTGACTACGTTTTAACCTCACCTACCAATGACTTCTGTTCAGAGCAGATGAGTTGGCATTTTATCATTTGTAATAACTATGCTGTAACCTGTATTACTGACATTATATTCTTTACACGTTGTTGGTATGTCCACGTTGTTGGTATGTCCACCTGCATGATGATGATATGTAATTCGCTTTTGTGATCTGATATCAGTAATCTACCCCTTTTAAATTCACCCCTCGGTTAACAGGCTAGTTATCTACAGAGGTTCAGGAAAACGTTCATTTCAAGGGCAAAGATATACCAGTAAATAATGACCCCGCTTTTCTCTATTCACTCTAGTTGTTTAGCTAAAAGCAGTCAGGTGTTTAGAGAGTAGGGACATGGAGTTTtctgcattatgatgcatttacaAGACACTACCACGGTCATGTTAGCCCACCATTATTACAATATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578250.2 False 5301 mRNA 0.49 3 53570165 53575953
TU2007646 True 1720 lncRNA 0.48 2 53570627 53574051

Neighbor

gene id symbol gene type direction distance location
sstr1b sstr1a coding downstream 18535 53535613 ~ 53551723 (-)
LOC110500888 peli3 coding downstream 164410 53370137 ~ 53405755 (-)
LOC110500716 NA coding downstream 406115 53160930 ~ 53164050 (-)
si:dkey-106g10.7 LOC106608588 coding downstream 422101 53140733 ~ 53148064 (-)
LOC110500710 LOC106608591 coding downstream 466929 53094313 ~ 53103236 (-)
LOC110500890 LOC100380644 coding upstream 315530 53891483 ~ 53985179 (-)
LOC110500728 LOC106608575 coding upstream 432501 54008454 ~ 54039871 (-)
LOC110500730 LOC106608572 coding upstream 497166 54073119 ~ 54184661 (-)
LOC110500734 NA coding upstream 619119 54195072 ~ 54196766 (-)
LOC118936296 NA coding upstream 626851 54202804 ~ 54203516 (-)
G1753390 NA non-coding downstream 21767 53547932 ~ 53548398 (-)
G1752319 NA non-coding downstream 75963 53493973 ~ 53494202 (-)
G1752314 NA non-coding downstream 81316 53488638 ~ 53488849 (-)
G1752309 NA non-coding downstream 91078 53478800 ~ 53479087 (-)
G1753491 NA non-coding upstream 163002 53738955 ~ 53740312 (-)
G1753622 NA non-coding upstream 426938 54002891 ~ 54003235 (-)
G1753639 NA non-coding upstream 456977 54032930 ~ 54033883 (-)
G1753647 NA non-coding upstream 470617 54046570 ~ 54046949 (-)
G1753674 NA non-coding upstream 479683 54055636 ~ 54549495 (-)
G1752321 LOC103370121 other downstream 65154 53502919 ~ 53505011 (-)
G1752268 NA other downstream 150840 53418400 ~ 53419325 (-)
G1751128 NA other downstream 1441847 52127998 ~ 52128318 (-)
c21h11orf68 cssa07h11orf68 other downstream 2068952 51485700 ~ 51501323 (-)
G1753637 NA other upstream 455629 54031582 ~ 54032306 (-)
G1754055 NA other upstream 1267112 54843065 ~ 54849083 (-)
LOC110500893 tada2b other upstream 1389223 54961826 ~ 54966157 (-)
LOC110500749 s100p other upstream 1530733 55106685 ~ 55107622 (-)
G1754243 NA other upstream 1696265 55272218 ~ 55273949 (-)

Expression


Co-expression Network