Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110500727 |
| gene name | LOC106608576 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 53736004 ~ 53891327 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036958185.1 | False | 15904 | mRNA | 0.51 | 49 | 53736004 | 53891327 |
| XM_036958193.1 | False | 15805 | mRNA | 0.51 | 48 | 53736004 | 53891327 |
| XM_036958184.1 | False | 15915 | mRNA | 0.51 | 50 | 53736005 | 53891327 |
| XM_036958186.1 | False | 15873 | mRNA | 0.51 | 50 | 53736005 | 53891327 |
| XM_036958187.1 | False | 15864 | mRNA | 0.51 | 49 | 53736005 | 53891327 |
| XM_036958188.1 | False | 15861 | mRNA | 0.51 | 49 | 53736005 | 53891327 |
| XM_036958189.1 | False | 15852 | mRNA | 0.51 | 48 | 53736005 | 53891327 |
| XM_036958190.1 | False | 15828 | mRNA | 0.51 | 47 | 53736005 | 53891327 |
| XM_036958191.1 | False | 15570 | mRNA | 0.51 | 52 | 53736005 | 53891327 |
| XM_036958192.1 | True | 15764 | mRNA | 0.51 | 48 | 53736006 | 53891327 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110500725 | LOC106608581 | coding | upstream | 230978 | 53500123 ~ 53505026 (+) |
| LOC110500724 | LOC106608582 | coding | upstream | 317646 | 53406046 ~ 53418358 (+) |
| rab1ba | LOC100695098 | coding | upstream | 368891 | 53348513 ~ 53367113 (+) |
| si:ch73-40a2.1 | LOC106608602 | coding | upstream | 388304 | 53335916 ~ 53347700 (+) |
| LOC110500887 | LOC106608584 | coding | upstream | 405350 | 53268513 ~ 53330654 (+) |
| LOC110500729 | md2l1 | coding | downstream | 176125 | 54067452 ~ 54070543 (+) |
| si:dkey-219e21.4 | LOC106608570 | coding | downstream | 308395 | 54199722 ~ 54202902 (+) |
| LOC110500735 | ablim2 | coding | downstream | 315156 | 54206483 ~ 54342581 (+) |
| LOC110500891 | afap1 | coding | downstream | 458017 | 54349344 ~ 54508277 (+) |
| LOC110500744 | grpel1 | coding | downstream | 1064220 | 54955547 ~ 54960002 (+) |
| G1752494 | NA | non-coding | upstream | 8305 | 53726894 ~ 53727699 (+) |
| G1751966 | NA | non-coding | upstream | 242150 | 53493535 ~ 53493854 (+) |
| G1751959 | NA | non-coding | upstream | 258067 | 53477735 ~ 53477937 (+) |
| G1751956 | NA | non-coding | upstream | 266094 | 53469610 ~ 53469910 (+) |
| G1752383 | NA | non-coding | downstream | 86 | 53891413 ~ 53892977 (+) |
| G1752637 | NA | non-coding | downstream | 133722 | 54025049 ~ 54026533 (+) |
| G1752647 | NA | non-coding | downstream | 158658 | 54049985 ~ 54050230 (+) |
| G1752639 | NA | non-coding | downstream | 180823 | 54072150 ~ 54074167 (+) |
| G1752664 | NA | non-coding | downstream | 196357 | 54087684 ~ 54089685 (+) |
| LOC110500722 | NA | other | upstream | 479403 | 53251413 ~ 53256660 (+) |
| G1751699 | LOC106608599 | other | upstream | 763621 | 52962449 ~ 52972383 (+) |
| G1750050 | NA | other | upstream | 1538997 | 52191200 ~ 52197007 (+) |
| G1750030 | LOC106608688 | other | upstream | 1640899 | 52094709 ~ 52095105 (+) |
| G1750012 | NA | other | upstream | 1657002 | 52071600 ~ 52079002 (+) |
| G1753100 | NA | other | downstream | 1110252 | 55001579 ~ 55011678 (+) |
| LOC110500754 | LOC106591080 | other | downstream | 1699278 | 55590450 ~ 55592100 (+) |
| G1755158 | NA | other | downstream | 2495080 | 56386407 ~ 56387622 (+) |
| G1755570 | NA | other | downstream | 2902404 | 56793731 ~ 56794574 (+) |
