LOC118942793 (LOC106608538)


Basic Information

Item Value
gene id LOC118942793
gene name LOC106608538
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 55592334 ~ 55594662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956497.1
CAACAACCACAGCATCCACCCcgacaacaaccacaaccacgCCTTCCACCCTGACAACAACCACAACCATGCCTTCCACCccgaccacaaccacaaccacgcCTTCCACCCCGACGACAACCATGCCTTCCACCCCGACAACAACCACACCTTCCACCCcgacaacaaccacaaccacgCCTTCCACCCtgacaacaaccacaaccacgCCTTCCACCccgaccacaaccacaaccacgaCTTCCACCCCAACAACAACGACGCCTTCCACCCCGACAACAACCACGCCTTCCACCTcgacaacaaccacaaccacaccttCCACCCtgacaacaaccacaaccacgCCTTCCACCCCGACAACAACCATGCCTTCCACCCCGACCACAACCACGCCTTCCACCCCGACCACAACCACGCCTTCCACCCCGACCCCAACCACGATTTTCCCAAAGATCTTACGCAAGACTACCACCCCGACCTCTGAGAAACCTCAACTGAAGAGACAGTTGGTGAGAATGAAGATGACCCCAAAGGATCCAAATATGAACCTCAGTGATCCTGCTGTTCAGGACTCCATCTTACAAGAGATAAGGAacaagctgaaggagcaggggtTACCTGCAGACACCATAGTGACATGGAAAAAGCAGCCTGATGGGAAGGTCTTTCACAAGGAGGAAGAGGGGTCTCccaagaaagaagaggaggagaagaagatgaagaggatGATGACAAAGAGAGAACTCTAATTATGTTAAATGTTCTCTCCTTTTTTATTTAGATTAATTATCTGTACtgggatgttttttctcaccctAATTAAATGTGTTTTCTTAAGTTAATTGTTTAATTATAAACATTTAATAGTGTTTTATCTTGAGATGTTTTTATTGATCATTTTCTTGACTTTTATTACAGGGTGTGTTCTCAAGATAGACATTTCACACATCATGTCTGTAAATGAGTTATTTGTAGTTATGTTGATATTCAGGGCTGAGAAAAAGTATTTGTCTCCTTTCTAATTTTCTCAACTTTTACATATTTAAGATGaagaatgttatcagatcttcaaagAAAACAGAATATTAGATGAAGGGAACTTGAGTGAACAAGTAACACAACAATTACctacttatttcatttatttcataacTAAGTTATGTAACACCCAATGTTCATGTGTTAAAAAGTAAACTCAgggacatttgtgggttttcaatcatgaactgctcatttcaagtcctgccacaacatctcaaatgGGATCATTAGGTCTGGACATTGACTAGGTCATTCCAAAACtataaatgtgttgtttttttaaccattttcatgtagaactgattgtgtgttttggatcaatgtcttgctgcatgaccaaCCTGCGTTTCAGCATCAGgtcacagacggatggcctgacattctcctgtagaattctctgatgcagagcagaattcatggttccttctattaagg

Function

NR:

description
PREDICTED: macrophage mannose receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956497.1 True 1479 mRNA 0.43 2 55592334 55594662
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110500754 LOC106591080 coding upstream 234 55590450 ~ 55592100 (+)
LOC118936467 LOC106591080 coding upstream 34432 55516569 ~ 55557902 (+)
LOC110500898 LOC106608541 coding upstream 35679 55542858 ~ 55556655 (+)
LOC118942952 NA coding upstream 79382 55511407 ~ 55512952 (+)
LOC110500897 LOC106591080 coding upstream 87021 55502540 ~ 55505313 (+)
LOC110500755 LOC106608544 coding downstream 643867 56238529 ~ 56455028 (+)
LOC118942812 NA coding downstream 1524073 57118735 ~ 57121924 (+)
LOC118942955 NA coding downstream 1617413 57212075 ~ 57232205 (+)
LOC110500761 LOC106608522 coding downstream 2171418 57766080 ~ 57853814 (+)
zgc:194930 LOC106608523 coding downstream 2271310 57865972 ~ 57896896 (+)
G1753304 NA non-coding upstream 151580 55440388 ~ 55440754 (+)
G1753303 NA non-coding upstream 155371 55434688 ~ 55436963 (+)
G1753269 NA non-coding upstream 159393 55431631 ~ 55432941 (+)
G1753268 NA non-coding upstream 161028 55430644 ~ 55431306 (+)
G1754413 NA non-coding downstream 4088 55598750 ~ 55598988 (+)
G1754447 NA non-coding downstream 30740 55625402 ~ 55625604 (+)
G1754482 NA non-coding downstream 70885 55665547 ~ 55665750 (+)
G1754601 NA non-coding downstream 178251 55772913 ~ 55773150 (+)
G1754604 NA non-coding downstream 182931 55777593 ~ 55777799 (+)
G1753100 NA other upstream 580656 55001579 ~ 55011678 (+)
LOC110500735 ablim2 other upstream 1284844 54206483 ~ 54342581 (+)
LOC110500722 NA other upstream 2335733 53251413 ~ 53256660 (+)
G1751699 LOC106608599 other upstream 2619951 52962449 ~ 52972383 (+)
G1755158 NA other downstream 791745 56386407 ~ 56387622 (+)
G1755570 NA other downstream 1199069 56793731 ~ 56794574 (+)
G1756789 NA other downstream 2331818 57926480 ~ 57928244 (+)
rwdd rwdd4 other downstream 2810622 58405236 ~ 58411726 (+)
G1757578 NA other downstream 3088475 58683137 ~ 58686523 (+)

Expression

LOC118942793(LOC106608538) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC118942793(LOC106608538) Expression in each Bioproject

Bar chart with 16 bars.
LOC118942793(LOC106608538) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Co-expression Network