LOC110500779 (LOC106608532)


Basic Information

Item Value
gene id LOC110500779
gene name LOC106608532
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 58499259 ~ 58508480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578312.2
CTTATTAaaacccttctcctccctcctcgtcCCATTGGTCTTATTaaaactcctctcctcccttctctggATCACTTTCTTCCACCTGATCCCTCGTTCCAAAGACCTAAGGATGGACTGGAGCGCTTACGAGGTAGATCCACTGgatgtccctcctctcacccccacCAGTAAGGAGGTCCTGAGCCAGGCGATAAGGGCCACCTTCGCAGGCTTCGCCCAGGAGAGCAGCCGTATGCACTTCCCACAAGACCCTAAACTGTGGTCAGAGTGGGAGGTGAACCACTGGTTAGACTGGTGCCAGGCTGAGTTCGGGCTCCAAAGCCTGGGCTCGGATTGGAGAGGGCTGCCTGGGAGTGAGCTCTGTACCCTGGACAGAGAGGCCTTCCTGGACCTGAGCTCTGACTACACAGCAGGAGAGATCCTCTGGGAACATCTGGAAACTATGCGCAGAGATTGTGAATATGATCGTGGTTCCTCTCTAGTCCTTTGCACGTTGAATTCTCTCTGCCAGTCGCAAATGAACCAAGACAGTTACGTGGACCATGTGCAGCTCATGGACAAGCAGAATCACCATGGTCAGTTCTCCCATCTCCCAATAGAACCCCCACAGCTTCTGACCCTTGACCCTGTGACTGTGAGATATCAGGACTACCACCGGGTCAAACAGGAAGGACCTTACAGAAACCACCTgtcctctgtccctctgctccGAGACCTTGACAGGACAGATTGTGACGTTGGGTTTGGGACCCTGCATTATGAGGACACGGACATCACCGCTTCTCTGTCCTTGACTAGACCAACACAGGGTGTGGAAGAGTCCATTCCTGAGGACCCCTTCAATTTGCCACCCCCACACAGGAGCTTCAAAGAGTTTATCGGGGACAAGACTGATCTGGGTAGAGCTCTGGTTCCGGCAGGCATTCTGTCTGCTTATACTGGCAGTGGTCCCATTCAGCTGTGGCAGTTTCTATTGGAGCTCCTCATTGACCGCAGCTGTCAATCATTTATAATTTGGACAGGGGATGGATGGGAGTTTAAACTGACAGATCCTGACGAGGTGGCCCAGCTATGGGGCCGGAGGAAGAACAAGCCTAAGATGAACTACGAGAAGTTGAGTCGAGGCCTGCGCTACTACTACGACAAGAACATCATCCACAAGAACGCTGGCAAGCGCTACGTCTACCGTTTCGTCTGTGACCTGCAAGGCCTGCTGGGATACGAACCCCGGGAACTGCACGCCATGTTGGATATCACGGCCAAAGGCGGCCATGAGTGAAAGCTGGGAAATGGGCGTTTCCTTTATTCCTCGACCGCTTCTAAACACGCATTGGAGGAGAAGATCCGAGGGGAGGAGCCGTAGAGCGGAAGGGGAGGAACCTCAGATCTTCTCCTCCAATGAGTTTTGAGAAGGAGGTTGAAGAACCAAGGAAAGACTTTTTGAGATTCACCCAGACGTTGGTGCAGACGGCGACGGGTCAAGAGACTGTGTTTACAAAAACTCAACCTCCTTATCATTTGGCAATCATTTCTTTGATCATGGTCAACTGTAAGCTGTGGGGCTTGTATGTTTTTATATGTGATAAGTATATATTCAATACAATTATTGAAGATGTGACCAGAGAAACAGTTTTGTTTAAATTGTTGtttatacagggccttcagaaagtattcaccctctTGACTCTTCCCACGTTTTGTTGGGTTAAAAGGTCGATTAAAAACATTTTGGTCAATGGTCTACACTAAGTACTCTGTGATGTCAAAGTAGAATAAATGTTCTAACATTtgtacaacaaaaacaaaaaataaataaaacgcaTATCTTGATGACTTa
>XM_036958287.1
CTTATTAaaacccttctcctccctcctcgtcCCATTGGTCTTATTaaaactcctctcctcccttctctggATCACTTTCTTCCACCTGATCCCTCGTTCCAAAGACCTAAGGATGGACTGGAGCGCTTACGAGGTAGATCCACTGgatgtccctcctctcacccccacCAGTAAGGAGGTCCTGAGCCAGGCGATAAGGGCCACCTTCGCAGGCTTCGCCCAGGAGAGCAGCCGTATGCACTTCCCACAAGACCCTAAACTGTGGTCAGAGTGGGAGGTGAACCACTGGTTAGACTGGTGCCAGGCTGAGTTCGGGCTCCAAAGCCTGGGCTCGGATTGGAGAGGGCTGCCTGGGAGTGAGCTCTGTACCCTGGACAGAGAGGCCTTCCTGGACCTGAGCTCTGACTACACAGCAGGAGAGATCCTCTGGGAACATCTGGAAACTATGCGCAGAGACAGTTACGTGGACCATGTGCAGCTCATGGACAAGCAGAATCACCATGGTCAGTTCTCCCATCTCCCAATAGAACCCCCACAGCTTCTGACCCTTGACCCTGTGACTGTGAGATATCAGGACTACCACCGGGTCAAACAGGAAGGACCTTACAGAAACCACCTgtcctctgtccctctgctccGAGACCTTGACAGGACAGATTGTGACGTTGGGTTTGGGACCCTGCATTATGAGGACACGGACATCACCGCTTCTCTGTCCTTGACTAGACCAACACAGGGTGTGGAAGAGTCCATTCCTGAGGACCCCTTCAATTTGCCACCCCCACACAGGAGCTTCAAAGAGTTTATCGGGGACAAGACTGATCTGGGTAGAGCTCTGGTTCCGGCAGGCATTCTGTCTGCTTATACTGGCAGTGGTCCCATTCAGCTGTGGCAGTTTCTATTGGAGCTCCTCATTGACCGCAGCTGTCAATCATTTATAATTTGGACAGGGGATGGATGGGAGTTTAAACTGACAGATCCTGACGAGGTGGCCCAGCTATGGGGCCGGAGGAAGAACAAGCCTAAGATGAACTACGAGAAGTTGAGTCGAGGCCTGCGCTACTACTACGACAAGAACATCATCCACAAGAACGCTGGCAAGCGCTACGTCTACCGTTTCGTCTGTGACCTGCAAGGCCTGCTGGGATACGAACCCCGGGAACTGCACGCCATGTTGGATATCACGGCCAAAGGCGGCCATGAGTGAAAGCTGGGAAATGGGCGTTTCCTTTATTCCTCGACCGCTTCTAAACACGCATTGGAGGAGAAGATCCGAGGGGAGGAGCCGTAGAGCGGAAGGGGAGGAACCTCAGATCTTCTCCTCCAATGAGTTTTGAGAAGGAGGTTGAAGAACCAAGGAAAGACTTTTTGAGATTCACCCAGACGTTGGTGCAGACGGCGACGGGTCAAGAGACTGTGTTTACAAAAACTCAACCTCCTTATCATTTGGCAATCATTTCTTTGATCATGGTCAACTGTAAGCTGTGGGGCTTGTATGTTTTTATATGTGATAAGTATATATTCAATACAATTATTGAAGATGTGACCAGAGAAACAGTTTTGTTTAAATTGTTGtttatacagggccttcagaaagtattcaccctctTGACTCTTCCCACGTTTTGTTGGGTTAAAAGGTCGATTAAAAACATTTTGGTCAATGGTCTACACTAAGTACTCTGTGATGTCAAAGTAGAATAAATGTTCTAACATTtgtacaacaaaaacaaaaaataaataaaacgcaTATCTTGATGACTTa
>XM_021578313.2
CTTATTAaaacccttctcctccctcctcgtcCCATTGGTCTTATTaaaactcctctcctcccttctctggATCACTTTCTTCCACCTGATCCCTCGTTCCAAAGACCTAAGGATGGACTGGAGCGCTTACGAGGTAGATCCACTGgatgtccctcctctcacccccacCAGTAAGGAGGTCCTGAGCCAGGCGATAAGGGCCACCTTCGCAGGCTTCGCCCAGGAGAGCAGCCGTATGCACTTCCCACAAGACCCTAAACTGTGGTCAGAGTGGGAGGTGAACCACTGGTTAGACTGGTGCCAGGCTGAGTTCGGGCTCCAAAGCCTGGGCTCGGATTGGAGAGGGCTGCCTGGGAGTGAGCTCTGTACCCTGGACAGAGAGGCCTTCCTGGACCTGAGCTCTGACTACACAGCAGGAGAGATCCTCTGGGAACATCTGGAAACTATGCGCAGAGATTGTGAATATGATCGTGGTTCCTCTCTAGTCCTTTGCACGTTGAATTCTCTCTGCCAGTCGCAAATGAACCAAGACAGTTACGTGGACCATGTGCAGCTCATGGACAAGCAGAATCACCATGGTCAGTTCTCCCATCTCCCAATAGAACCCCCACAGCTTCTGACCCTTGACCCTGTGACTGTGAGATATCAGGACTACCACCGGGTCAAACAGGAAGGACCTTACAGAAACCACCTgtcctctgtccctctgctccGAGACCTTGACAGGACAGATTGTGACGTTGGGTTTGGGACCCTGCATTATGAGGACACGGACATCACCGCTTCTCTGTCCTTGACTAGACCAACACAGGGTGTGGAAGAGTCCATTCCTGAGGACCCCTTCAATTTGCCACCCCCACACAGGAGCTTCAAAGAGTTTATCGGGGACAAGACTGATCTGGGTAGAGCTCTGGTTCCGGCAGGCATTCTGTCTGCTTATACTGGCAGTGGTCCCATTCAGCTGTGGCAGTTTCTATTGGAGCTCCTCATTGACCGCAGCTGTCAATCATTTATAATTTGGACAGGGGATGGATGGGAGTTTAAACTGACAGATCCTGACGAGGCAAGAGGTGGCCCAGCTATGGGGCCGGAGGAAGAACAAGCCTAAGATGAACTACGAGAAGTTGAGTCGAGGCCTGCGCTACTACTACGACAAGAACATCATCCACAAGAACGCTGGCAAGCGCTACGTCTACCGTTTCGTCTGTGACCTGCAAGGCCTGCTGGGATACGAACCCCGGGAACTG

Function

NR:

description
protein c-ets-1-A-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578312.2 False 1840 mRNA 0.49 8 58499259 58508480
XM_036958287.1 False 1765 mRNA 0.49 7 58499259 58508480
XM_021578313.2 True 1247 mRNA 0.53 8 58499859 58508480

Neighbor

gene id symbol gene type direction distance location
LOC110500784 ing2 coding downstream 55313 58441167 ~ 58443946 (-)
adam19a LOC106608525 coding downstream 108234 58169191 ~ 58391025 (-)
LOC118942958 NA coding downstream 120784 58372150 ~ 58378475 (-)
LOC118942959 NA coding downstream 301009 58195260 ~ 58198250 (-)
LOC110500946 fbxo24 coding downstream 430926 58056547 ~ 58068333 (-)
LOC110500778 LOC106608531 coding upstream 96 58508576 ~ 58512400 (-)
LOC110500776 glu2b coding upstream 452781 58961261 ~ 59280662 (-)
LOC110500775 dmrta1 coding upstream 773689 59282169 ~ 59284125 (-)
LOC110500772 rbpms coding upstream 866916 59375396 ~ 59440544 (-)
dctn6 LOC106608510 coding upstream 946235 59454715 ~ 59460683 (-)
G1757421 NA non-coding downstream 20678 58477903 ~ 58478581 (-)
G1757391 LOC106608527 non-coding downstream 74037 58424905 ~ 58425222 (-)
G1757386 LOC106608527 non-coding downstream 83104 58415935 ~ 58416155 (-)
G1757378 NA non-coding downstream 87575 58409953 ~ 58411684 (-)
G1757279 NA non-coding downstream 106733 58391692 ~ 58392526 (-)
G1757440 NA non-coding upstream 21258 58529738 ~ 58529956 (-)
G1757441 NA non-coding upstream 21574 58530054 ~ 58530286 (-)
G1757445 NA non-coding upstream 30580 58539060 ~ 58545895 (-)
G1757446 NA non-coding upstream 31060 58539540 ~ 58546221 (-)
G1757454 NA non-coding upstream 46613 58555093 ~ 58555347 (-)
G1757130 NA other downstream 456202 58042650 ~ 58043057 (-)
G1757074 NA other downstream 590125 57908139 ~ 57909134 (-)
G1757073 NA other downstream 596666 57902086 ~ 57902593 (-)
G1755322 NA other downstream 2091941 56406582 ~ 56407318 (-)
G1755310 NA other downstream 2108693 56390057 ~ 56390566 (-)
G1757692 NA other upstream 291694 58800174 ~ 58805825 (-)
G1758095 NA other upstream 683952 59192432 ~ 59195490 (-)
G1758845 NA other upstream 1515287 60023767 ~ 60024903 (-)
G1758890 NA other upstream 1614062 60122542 ~ 60123364 (-)
G1758915 NA other upstream 1679930 60188410 ~ 60225587 (-)

Expression


Co-expression Network