LOC110500778 (LOC106608531)


Basic Information

Item Value
gene id LOC110500778
gene name LOC106608531
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 58508576 ~ 58512400 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578310.2
GGAAGCGGTGAAGTGAGATGGTCGACTCCGCCTAAAATCTGTCTTGGCGAAAAGCGTTAAGCAGAGGGCGGAGTTTTTGTACGGGCGGCAATGAGAGAGCGGCGAATATGGTAAGTACTATTTTGATATGAGAAGCTTATCGTTTAATCAAATATAAGTTTCATACTGATTAGGTTGCTACGAGTGTACTGATGTAGCCTAAGTGTAATGCACGTAACATTCCGGCAACTTTGTGAAAAACATTTTTATATGGGAGTTGTTGTTCACAggcgtatctgccctctcattggctagaatgttcCCACCTGATCGCGCATCCTCCCGCCTGCTTTTAGCCTTTGCGGACATGTATTTCCATCGTTAGAGCGGTCAGTCAaccatcttgtcaatataattgaTCCTCTTTGCCTTACATTCATTGTTTGTAAGACGCTGGGGAAGAAGAGCGCGATACACATTTCATAGCGCAAATGTAAAACATTCGCCAATAGACATTTAGAAGGTTTTCTATAATAGATCATGTCCAGCTGATATATCCAGATGCTGGGTAAGCGAGGAAGATTCAGACGGAGTTACTCTCTTCCTGCTATATTGTAGCCAATCACATTGCAACATAGTAGCCAGTAATATTATAATCAGACTAGCAGTAAGGTTATTGTAGCAACATGAAGCCTCAGTCAAAAACTAACACAGGGATCAAAAGGGAGACTTCAATGTCAGCCCAAGCTCGCCCCTCGAAAACCGCTGGAGAGGGTGAGGTATCGCTCTCTTTCCAGGACGAACTggcggcgacgatccacggtgcGTTCGAAGTGGCTGTGGAAATTGCCGTATTAGAAGTCACTAAACTGGTAGGTCAAGCGCTTGGGGATGTCCGCGATCAGATGCACGAAACCCTACGGGAAAACAAGTCTCTTAAACAACGCTTGCAAACAACCGAGCAAGAGTTGAATGCTGCGCGTCAATGTGTGGAAACAACGAGAGGTGTAAGTCCGCAGGGACAGTTCTCGACAAGTCCTCTCCACAACAACAACTTAGCAAAGACTCAAAAGCAGTCAAAGGACAACGAATTAAATATAAAGTCCTCATATTCATTGGACGAATATGGATATGAAATTGTGGAGGCAGAGATCAGTAGTGAACGACAGAAAGACCATGGGTCTTTCAGTGAAATCAGCGAGGATGGTCGGGTGTGTTCCCAAGACCTACACCCAGCTACAAGAGGACAGTCTATCCCTCATCATGACCTGCTTAAAGAAGTCGGGGAAGAGGCCTCCAGTTTGTGTATGGACCACAAGGCAAGTGTAGAAAGCATCAGTCATAGTGGTCTAGAAACAACATTTGGAGATAATGACCCATCACCACTTCACGTAGTGGTCCAGAGCCTTGAGACGGAGCAGgttagagtgaaggaggagaacgGTTCTGGttccggctctggttctggttctagtTTTGACTCTGTGGTAAAAGAAGACTTTGGTCCTGATAGTCTGTCTCTGGTTCAGTCCAAGATGTTAGAGGAGTGGAAACCGGACCCTTTGGACTTACAGATctctgactctctgcttcctggaACCAGCCATAGTCTGTctcaCCCTCATATGGTCAACACAGATGTTCCACAACTGACTGCCCCAACAGCCAGTGGCCTTCCAGCCTTCTCCTCCCAGTTCCCCAACAACCTCTTCCAACCAAGAGAGGCAGCAGCTCCCATCATCCCTGTTGCCCCACCTCAGATCTATGGAGTCCAGATCAGAACCAACCCTAATcccaccatcccccaccccaaccctaatcccaccatcccccaccccaGCCACATCTGCAAACTCTGTGGCCAGGGCTTCCACCAGCCCAGCGAGCTCCGTAGACACCACACCCAGGCCCACCCCAAGCGTCAGGTCTTCCCCCCTGGCCAGAGCCCTTACCACTGCAGCGAGTGTGACCGGGATTTCAACCGTCTGGAGAACCTGAAGACTCACCTGAGAATCCACACTGGAGAGAGACCTTATACCTGCTCGGTGTGCTCCATGCGCTTTCGCCACTCGGGGGCGCTCACCAGGCATTTCCGCatacacactggggagaagccGTACGTCTGCGGTCAGTGCGGAAAGACATTCCGGAACTGTGGGGGACTCCGGTTCCACCAGCGCTCCCATAGTAGACAGGGACAGTGCTAGTGTAGCgatttaaggggggggggggcagctatgTGGATACAGCAGGGCAAGCTCAGTCACTACCTCCTTTGCCATAATGGTCCAGAACCCTTGGCACAGGCTGAAAGTCTTTACCAAACCCTCCCAGATTTCAAGATTAAAACATATTAAACTTGGCCAGGCcataaaggggaaatctgcagtcACTACTAATGTTTATTGATTTGTCCGTTAATAaggatatgtacccattgattcttgaagaatataactttttgaacatAGTTACCATTTTCGTACACCTCAAAATATGATCTTGTTTTACTccgatgtttgtaaacaaagttaATGTAAACAAACCGTGACTACCATGGAAACATGGTTAAACCTTTAGTTTTGATATCATGGACCACCTGCATCCACagctctatgaatttgagagtggtttctTTTCTCCAGCCCCGTCCCTCAGCTCTTAACGAACAGTGGCGGGGAgtttgctttgttattgttttaactGCTGAATGCTGCTTTAACACCAACCAGGTCTGTCCTTTCTTTTCCCCCCTCTGTTGTTTTCTACAAATGTCTCACACAATGTGTGACTCATTTTGTGACTAAATTGCTCACTGTCATGGCTTCCTAAAACCCACTTCATGGAAGAACCTCATCGCAGTAAGGCAGCCACAGTGGTCCGGTAAATGGTGTCTGGCTCTATAGGTTCTCCCTGCTGGgctggggaacacacacacacacacacacacacatagatgttAACTTACTTACGATACACTACCTGATATAATCCCAGTGTTTCTGTTATATGAATGGGGTTGAAGAAACCCCCTGCACAgatatgcacttacagccagccCCTCATTGGGTGGTCACTACACCACATGCCATGCTGAAATAGAAAGACCTGATGCTGGTGTAAATATTTCCAATTGAATTGCCATGATCTCAGTGGTTCCTGATGATATACTAGTGTATTGCCTTAGTTAAACGCTATCAACTTAAAAACAAAAAGAGTAGTTCCTTATCTCTATCACAACTACCCTTCTCAGTTGTAATGGCTCCTTTTGTGGCATCGTTTCTCTagataacctccctgtatgtctTTTTGCAGTATCTTTTCCATGTTGCCTAATTGGGAGTTCTCGTTTCCTATTTGGTAGTGTCCCCAACACCCGCCCCTCCATCACTGCCGATTGACACATATCCGTCACCACCTGTCCCCTCCCTCCTCGTCTCATTaaaactcctctcctcc
>XM_021578311.2
AGCCGAGAGGAAGCGGTGAAGTGAGATGGTCGACTCCGCCTAAAATCTGTCTTGGCGAAAAGCGTTAAGCAGAGGGCGGAGTTTTTGTACGGGCGGCAATGAGAGAGCGGCGAATATGGTAAGTACTATTTTGATATGAGAAGCTTATCGTTTAATCAAATATAAGTTTCATACTGATTAGGTTGCTACGAGTGTACTGATGTAGCCTAAGTGTAATGCACGTAACATTCCGGCAACTTTGTGAAAAACATTTTTATATGGGAGTTGTTGTTCACAggcgtatctgccctctcattggctagaatgttcCCACCTGATCGCGCATCCTCCCGCCTGCTTTTAGCCTTTGCGGACATGTATTTCCATCGTTAGAGCGGTCAGTCAaccatcttgtcaatataattgaTCCTCTTTGCCTTACATTCATTGTTTGTAAGACGCTGGGGAAGAAGAGCGCGATACACATTTCATAGCGCAAATGTAAAACATTCGCCAATAGACATTTAGAAGGTTTTCTATAATAGATCATGTCCAGCTGATATATCCAGATGCTGGGTAAGCGAGGAAGATTCAGACGGAGTTACTCTCTTCCTGCTATATTGTAGCCAATCACATTGCAACATAGTAGCCAGTAATATTATAATCAGACTAGCAGTAAGGTTATTGTAGCAACATGAAGCCTCAGTCAAAAACTAACACAGGGATCAAAAGGGAGACTTCAATGTCAGCCCAAGCTCGCCCCTCGAAAACCGCTGGAGAGGGTGAGGTATCGCTCTCTTTCCAGGACGAACTggcggcgacgatccacggtgcGTTCGAAGTGGCTGTGGAAATTGCCGTATTAGAAGTCACTAAACTGGTAGGTCAAGCGCTTGGGGATGTCCGCGATCAGATGCACGAAACCCTACGGGAAAACAAGTCTCTTAAACAACGCTTGCAAACAACCGAGCAAGAGTTGAATGCTGCGCGTCAATGTGTGGAAACAACGAGAGGTGTAAGTCCGCAGGGACAGTTCTCGACAAGTCCTCTCCACAACAACAACTTAGCAAAGACTCAAAAGCAGTCAAAGGACAACGAATTAAATATAAAGTCCTCATATTCATTGGACGAATATGGATATGAAATTGTGGAGGCAGAGATCAGTAGTGAACGACAGAAAGACCATGGGTCTTTCAGTGAAATCAGCGAGGATGGTCGGGTGTGTTCCCAAGACCTACACCCAGCTACAAGAGGACAGTCTATCCCTCATCATGACCTGCTTAAAGTCGGGGAAGAGGCCTCCAGTTTGTGTATGGACCACAAGGCAAGTGTAGAAAGCATCAGTCATAGTGGTCTAGAAACAACATTTGGAGATAATGACCCATCACCACTTCACGTAGTGGTCCAGAGCCTTGAGACGGAGCAGgttagagtgaaggaggagaacgGTTCTGGttccggctctggttctggttctagtTTTGACTCTGTGGTAAAAGAAGACTTTGGTCCTGATAGTCTGTCTCTGGTTCAGTCCAAGATGTTAGAGGAGTGGAAACCGGACCCTTTGGACTTACAGATctctgactctctgcttcctggaACCAGCCATAGTCTGTctcaCCCTCATATGGTCAACACAGATGTTCCACAACTGACTGCCCCAACAGCCAGTGGCCTTCCAGCCTTCTCCTCCCAGTTCCCCAACAACCTCTTCCAACCAAGAGAGGCAGCAGCTCCCATCATCCCTGTTGCCCCACCTCAGATCTATGGAGTCCAGATCAGAACCAACCCTAATcccaccatcccccaccccaaccctaatcccaccatcccccaccccaGCCACATCTGCAAACTCTGTGGCCAGGGCTTCCACCAGCCCAGCGAGCTCCGTAGACACCACACCCAGGCCCACCCCAAGCGTCAGGTCTTCCCCCCTGGCCAGAGCCCTTACCACTGCAGCGAGTGTGACCGGGATTTCAACCGTCTGGAGAACCTGAAGACTCACCTGAGAATCCACACTGGAGAGAGACCTTATACCTGCTCGGTGTGCTCCATGCGCTTTCGCCACTCGGGGGCGCTCACCAGGCATTTCCGCatacacactggggagaagccGTACGTCTGCGGTCAGTGCGGAAAGACATTCCGGAACTGTGGGGGACTCCGGTTCCACCAGCGCTCCCATAGTAGACAGGGACAGTGCTAGTGTAGCgatttaaggggggggggggcagctatgTGGATACAGCAGGGCAAGCTCAGTCACTACCTCCTTTGCCATAATGGTCCAGAACCCTTGGCACAGGCTGAAAGTCTTTACCAAACCCTCCCAGATTTCAAGATTAAAACATATTAAACTTGGCCAGGCcataaaggggaaatctgcagtcACTACTAATGTTTATTGATTTGTCCGTTAATAaggatatgtacccattgattcttgaagaatataactttttgaacatAGTTACCATTTTCGTACACCTCAAAATATGATCTTGTTTTACTccgatgtttgtaaacaaagttaATGTAAACAAACCGTGACTACCATGGAAACATGGTTAAACCTTTAGTTTTGATATCATGGACCACCTGCATCCACagctctatgaatttgagagtggtttctTTTCTCCAGCCCCGTCCCTCAGCTCTTAACGAACAGTGGCGGGGAgtttgctttgttattgttttaactGCTGAATGCTGCTTTAACACCAACCAGGTCTGTCCTTTCTTTTCCCCCCTCTGTTGTTTTCTACAAATGTCTCACACAATGTGTGACTCATTTTGTGACTAAATTGCTCACTGTCATGGCTTCCTAAAACCCACTTCATGGAAGAACCTCATCGCAGTAAGGCAGCCACAGTGGTCCGGTAAATGGTGTCTGGCTCTATAGGTTCTCCCTGCTGGgctggggaacacacacacacacacacacacacatagatgttAACTTACTTACGATACACTACCTGATATAATCCCAGTGTTTCTGTTATATGAATGGGGTTGAAGAAACCCCCTGCACAgatatgcacttacagccagccCCTCATTGGGTGGTCACTACACCACATGCCATGCTGAAATAGAAAGACCTGATGCTGGTGTAAATATTTCCAATTGAATTGCCATGATCTCAGTGGTTCCTGATGATATACTAGTGTATTGCCTTAGTTAAACGCTATCAACTTAAAAACAAAAAGAGTAGTTCCTTATCTCTATCACAACTACCCTTCTCAGTTGTAATGGCTCCTTTTGTGGCATCGTTTCTCTagataacctccctgtatgtctTTTTGCAGTATCTTTTCCATGTTGCCTAATTGGGAGTTCTCGTTTCCTATTTGGTAGTGTCCCCAACACCCGCCCCTCCATCACTGCCGATTGACACATATCCGTCACCACCTGTCCCCTCCCTCCTCGTCTCATTaaaactcctctcctcc

Function

NR:

description
zinc finger protein 37-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578310.2 False 3438 mRNA 0.47 3 58508576 58512392
XM_021578311.2 True 3443 mRNA 0.47 3 58508576 58512400

Neighbor

gene id symbol gene type direction distance location
LOC110500779 LOC106608532 coding downstream 96 58499259 ~ 58508480 (-)
LOC110500784 ing2 coding downstream 64630 58441167 ~ 58443946 (-)
adam19a LOC106608525 coding downstream 117551 58169191 ~ 58391025 (-)
LOC118942958 NA coding downstream 130101 58372150 ~ 58378475 (-)
LOC118942959 NA coding downstream 310326 58195260 ~ 58198250 (-)
LOC110500776 glu2b coding upstream 448861 58961261 ~ 59280662 (-)
LOC110500775 dmrta1 coding upstream 769769 59282169 ~ 59284125 (-)
LOC110500772 rbpms coding upstream 862996 59375396 ~ 59440544 (-)
dctn6 LOC106608510 coding upstream 942315 59454715 ~ 59460683 (-)
trnay-gua-65 NA coding upstream 1088121 59600521 ~ 59600607 (-)
G1757421 NA non-coding downstream 29995 58477903 ~ 58478581 (-)
G1757391 LOC106608527 non-coding downstream 83354 58424905 ~ 58425222 (-)
G1757386 LOC106608527 non-coding downstream 92421 58415935 ~ 58416155 (-)
G1757378 NA non-coding downstream 96892 58409953 ~ 58411684 (-)
G1757279 NA non-coding downstream 116050 58391692 ~ 58392526 (-)
G1757440 NA non-coding upstream 17338 58529738 ~ 58529956 (-)
G1757441 NA non-coding upstream 17654 58530054 ~ 58530286 (-)
G1757445 NA non-coding upstream 26660 58539060 ~ 58545895 (-)
G1757446 NA non-coding upstream 27140 58539540 ~ 58546221 (-)
G1757454 NA non-coding upstream 42693 58555093 ~ 58555347 (-)
G1757130 NA other downstream 465519 58042650 ~ 58043057 (-)
G1757074 NA other downstream 599442 57908139 ~ 57909134 (-)
G1757073 NA other downstream 605983 57902086 ~ 57902593 (-)
G1755322 NA other downstream 2101258 56406582 ~ 56407318 (-)
G1755310 NA other downstream 2118010 56390057 ~ 56390566 (-)
G1757692 NA other upstream 287774 58800174 ~ 58805825 (-)
G1758095 NA other upstream 680032 59192432 ~ 59195490 (-)
G1758845 NA other upstream 1511367 60023767 ~ 60024903 (-)
G1758890 NA other upstream 1610142 60122542 ~ 60123364 (-)
G1758915 NA other upstream 1676010 60188410 ~ 60225587 (-)

Expression


Co-expression Network