LOC110500780 (caap1)


Basic Information

Item Value
gene id LOC110500780
gene name caap1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 58512708 ~ 58523630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958289.1
CCCGGAAAAGCTTTTGTGTCGGTTGCCGTCGAGACAGTGAGCAGCAGTCATCCCGTTTACAAGAGTAGCAGTAGCTAGTTGTGGAAGAACACTTAGCTATATTGTTTGCTCGTAATTGTAACcagtaaaacaaaaaaatgctAAGGAAAAAATCCACTAGCAGAGAAAAGAAAAGGAAAAGTTCACATACGGAAGAGCAGCATGTCGACAGAAGACGAAGGTGTACAGAGTCTAGTGTGGAGGACTCCAAGGAGGAGCAGGCAGATCTGGAGCTGATTGAGCCTGGCAGCGACGTCGAGGAGGGAGGACTGGACCTGAGTGTGCCATTTAAACCCATCAGTGCCTATGTCGCAGACAGACATGAGATGCTCGATCAGTGCTTTCACGTGCTGGGGGAGAATAAGCTGCAGAAGATGCTGCCTGATGAACTCAAGAGCTGTAATCTGGATGAAATCAAGACATTGTGCAGGGAGCAGCTGGAGCAGCTGTCTCAAAGCCACCTCCTTCAGATACTGGAGGGTGAAGAGCTGACTGGTTCATCTGAAGGGGATAGGGAAAATGGCGCCACCGATAGCCAGCAGGATAATAATGTGGATTCTACGTCGTCCCTCAAAGAGAGTGTTGAAGTGGAGATCAAACAAGAAGGTGGTGGCTCGGAGGAGAGCGACGTCCTTAGCATCAACGCCGACACCTACGACAGTGACATCGAGGGACACAAAGACGAGCCGTCTGAAAAAACCGAGGAAGCCGCCAGGACACCGGAAGTAGTTGCTGGAGTAACATCTAACCCCGGCCCCTCCGCGACCTTTGCCCCTGCCGACAGGAAACCCTTAGTGGACAAACCCCCCGAACCGAAGAAAGAACTCCAGAAGGACATAGACAAAAGCGTTAGCGAGATCCTAGCTTTAGCATCGCCACCTGACCAGGAAGACGCAAAAAAAAACGGTGGCGCCACCACTACGCCAAGCCAGCCCTCAGCCCAGCAGCTGGAGCTCCTGGAGTTAGAGATGAGAGCTAGGGCCATTAAGGCCCTAATGAAAGCCAACGATGTGAAGAAACGGACGTAAACAACGCAGGCTGAGGCTCTCAAAGACTTGTCGTTTTTTTTAAGATGTTTCTAAAAAATAATTTCATTCTCAGAAAAGGAGTCATATGAGTCACTTGTTGTTCTTTTGAATTTTAAGGATTGTAATcgagtaaagttttttttttcccccttcta
>XM_021578314.2
GGAAAAGCTTTTGTGTCGGTTGCCGTCGAGACAGTGAGCAGCAGTCATCCCGTTTACAAGAGTAGCAGTAGCTAGTTGTGGAAGAACACTTAGCTATATTGTTTGCTCGTAATTGTAACcagtaaaacaaaaaaatgctAAGGAAAAAATCCACTAGCAGAGAAAAGAAAAGGAAAAGTTCACATACGGAAGAGCAGCATGTCGACAGAAGACGAAGGTGTACAGAGTCTAGTGTGGAGGACTCCAAGGAGGAGCAGGCAGATCTGGAGCTGATTGAGCCTGGCAGCGACGTCGAGGAGGGAGGACTGGACCTGAGTGTGCCATTTAAACCCATCAGTGCCTATGTCGCAGACAGACATGAGATGCTCGATCAGTGCTTTCACGTGCTGGGGGAGAATAAGCTGCAGAAGATGCTGCCTGATGAACTCAAGAGCTGTAATCTGGATGAAATCAAGACATTGTGCAGGGAGCAGCTGGAGCAGCTGTCTCAAAGCCACCTCCTTCAGATACTGGAGGGTGAAGAGCTGACTGGTTCATCTGAAGGGGATAGGGAAAATGGCGCCACCGATAGCCAGCAGGATAATAATGTGGATTCTACGTCGTCCCTCAAAGAGAGTGTTGAAGTGGAGATCAAACAAGAAGGTGGTGGCTCGGAGGAGAGCGACGTCCTTAGCATCAACGCCGACACCTACGACAGTGACATCGAGGGACACAAAGACGAGCCGTCTGAAAAAACCGAGGAAGCCGCCAGGACACCGGAAGTAGTTGCTGGAGTAACATCTAACCCCGGCCCCTCCGCGACCTTTGCCCCTGCCGACAGGAAACCCTTAGTGGACAAACCCCCCGAACCGAAGAAAGAACTCCAGAAGGACATAGACAAAAGCGTTAGCGAGATCCTAGCTTTAGCATCGCCACCTGACCAGGAAGACGCAAAAAAAAACGGTGGCGCCACCACTAGCCGCTGCTCCAGACGCCCCCTTGTTGGTTACGAGGCTACCCGCTCAGAGTGCACCCGTCCCTGGCTTAGCTCCAGCGCCAAGCCAGCCCTCAGCCCAGCAGCTGGAGCTCCTGGAGTTAGAGATGAGAGCTAGGGCCATTAAGGCCCTAATGAAAGCCAACGATGTGAAGAAACGGACGTAAACAACGCAGGCTGAGGCTCTCAAAGACTTGTCGTTTTTTTTAAGATGTTTCTAAAAAATAATTTCATTCTCAGAAAAGGAGTCATATGAGTCACTTGTTGTTCTTTTGAATTTTAAGGATTGTAATcgagtaaagttttttttttcccccttcta

Function

symbol description
caap1 Involved in negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958289.1 False 1222 mRNA 0.49 7 58512708 58523630
XM_021578314.2 True 1295 mRNA 0.50 6 58512711 58523630
Loading

Neighbor

gene id symbol gene type direction distance location
si:ch211-212k18.7 cd68 coding upstream 48524 58456696 ~ 58464184 (+)
LOC110500903 LOC106608527 coding upstream 71437 58411942 ~ 58441271 (+)
rwdd rwdd4 coding upstream 100982 58405236 ~ 58411726 (+)
lrch4 lrch4 coding upstream 371590 58084350 ~ 58141118 (+)
pcolceb pcolce coding upstream 492263 57996628 ~ 58020445 (+)
elavl2 elavl2 coding downstream 327453 58851083 ~ 58904451 (+)
LOC110500773 LOC106608508 coding downstream 819978 59343608 ~ 59348145 (+)
LOC110500769 LOC106608502 coding downstream 939963 59463593 ~ 59514503 (+)
LOC118942960 NA coding downstream 969859 59493489 ~ 59498544 (+)
trnar-ucu-10 NA coding downstream 992791 59516421 ~ 59516493 (+)
G1757341 NA non-coding upstream 2964 58508640 ~ 58509744 (+)
G1757335 NA non-coding upstream 19199 58491916 ~ 58493509 (+)
G1757285 NA non-coding upstream 110631 58401598 ~ 58402077 (+)
G1757350 NA non-coding downstream 9124 58532754 ~ 58532957 (+)
G1757365 NA non-coding downstream 31765 58555395 ~ 58555692 (+)
G1757467 NA non-coding downstream 49232 58572862 ~ 58573072 (+)
G1757510 NA non-coding downstream 88310 58611940 ~ 58612702 (+)
G1757523 NA non-coding downstream 97006 58620636 ~ 58623472 (+)
G1756789 NA other upstream 584464 57926480 ~ 57928244 (+)
G1755570 NA other upstream 1718134 56793731 ~ 56794574 (+)
G1755158 NA other upstream 2125086 56386407 ~ 56387622 (+)
LOC110500754 LOC106591080 other upstream 2921568 55590450 ~ 55592100 (+)
G1757578 NA other downstream 159507 58683137 ~ 58686523 (+)
G1758801 NA other downstream 1798585 60322215 ~ 60326620 (+)
G1758818 NA other downstream 1828016 60351646 ~ 60353092 (+)
G1758786 NA other downstream 1835200 60358349 ~ 60359351 (+)
G1759168 LOC101154678 other downstream 2198528 60722158 ~ 60722472 (+)

Expression

LOC110500780(caap1) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
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LOC110500780(caap1) Expression in each Bioproject

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LOC110500780(caap1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network