LOC110500775 (dmrta1)


Basic Information

Item Value
gene id LOC110500775
gene name dmrta1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59282169 ~ 59284125 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578306.2
ATGGAAGGCAGCATTAGACCGCACGGCTTGGCTGGgcacagctcctctcctctctccgtcgGGGGTTTACAGATGCCCGCTTCCCTTCTGCGCCCTCCGCCTCTCTTTCTCCGAGCTGCTGCCTGTAAACCGTCGATGGAGAGGGGCTACCCCCGAACCCCGAAGTGCGCACGGTGCAGGAACCACGGCGTGGTGTCCGCTCTGAAAGGCCACAAGCGCTTCTGTCGTTGGAGAGACTGCGTGTGCGCAAAGTGTACCCTGATAGCGGAGAGGCAGCGGGTGATGGCTGCACAGGTGGCACTCAGGAGACAACAGGCGCAGGAGGAGAGCGAGGCCCGGGAGCTCCAGTTCATGTACACCGGCTCCGGGGCGGGGGAGACCGGACTGACCATGGCATCTGGAGTACAGCGATCTGTAAACACCGTGCCAAGAATATCTAGTTATGATGTTTTTGGAACTGACGACCAAAAAGACGATGACAAACTGACCAAGTACAACCTAAACAACGGATTCATGGGCCGAACGTTCTATGCACCTCACACCGCACCACTGTCCTCTCCATTGGGAAAGAACGATACCTCTCCTAATCAAGAGAAAAAACAGACGGTCTTCGACAAGGAGAGTGGCAGTCAGACGGCTGCTTTTGACCACCTGTCAGACCACACAGAGAGCCCACGGTCTCTGTCATCCTCGGACCTCGAGTCGGGCAGCGAGTCCGAGCGGCCCAAGGACTACCCTTCGCTGGAGATTACCGAGCCCGGTTGCGCGTCAAAGGACCGGGACCCCACCGAGGTCATGACCAAGATATTCCCCCATCACAAGCGGGATACTTTGGAATCGGTGGTGAAAACTTGCAAAGGGGACATCGTGAAAGCTATTGAACTAGTTCTTAGCTCCAAAGAGAATAAATGCAACTCGGATAGCGtcggtctatctctgtctgttcaCTCAAATGAACCAAGGCCTAATTTTGGACTTCCAGGGGTAGCGTTGGGGGCTCTGGGTACCAAGTCTGCTTTTTCCCCATTGCAAACCACGCCAACAGCTGCCGGAGGCGAAAGTATGTACGGGCTGAGTCCTCGCTTTGGTATTAATCCTTTGCGTCTGGCCTACTCAACCGCAGGTGGTGGCATACCTAATTTCATGTCACCGTATGTGACGTCCGGACTGATGCCAGTTTTTCCATTCCGCCCGCCGTTGGACTATTCTTTCCCGGGCATGATGCGAGACCTCTCCTATCTCCAAAGTAAAGACTCCCTATGTAACACCGGCATATACTCTCGTATAAATCATGAGAAATAATTTTGGTTCAAGCAACAAAACACACGTAGATAAaatgccccccccaaaaaacaaaacaGTTGGACTATTTATCAAACTGCTGTGTAACTTCTTTTACAGGTTGTCTTGTCTGATTGAAAGTACTTTTGCGGAGGTGATTATGCAAATAATGTTATCACATATGTCTTAAAACATTTTCAGTGTCTTTACAATTCCaatatattttttgaaactgtACATTTTGTAAAGTTTGTGTCTTAAATAAAACACATCAAATGAAA

Function

symbol description
dmrta1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in germ cell development; regulation of transcription by RNA polymerase II; and sex differentiation. Predicted to act upstream of or within male mating behavior and ovarian follicle development. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
doublesex- and mab-3-related transcription factor A1

GO: NA

KEGG:

id description
K19491 DMRT4_5, DMRTA; doublesex- and mab-3-related transcription factor 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578306.2 True 1562 mRNA 0.51 2 59282169 59284125
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110500776 glu2b coding downstream 1507 58961261 ~ 59280662 (-)
LOC110500778 LOC106608531 coding downstream 769769 58508576 ~ 58512400 (-)
LOC110500779 LOC106608532 coding downstream 773689 58499259 ~ 58508480 (-)
LOC110500784 ing2 coding downstream 838223 58441167 ~ 58443946 (-)
LOC118942958 NA coding downstream 903694 58372150 ~ 58378475 (-)
LOC110500772 rbpms coding upstream 91271 59375396 ~ 59440544 (-)
dctn6 LOC106608510 coding upstream 170590 59454715 ~ 59460683 (-)
trnay-gua-65 NA coding upstream 316396 59600521 ~ 59600607 (-)
trnay-gua-66 NA coding upstream 317074 59601199 ~ 59601285 (-)
trnay-gua-67 NA coding upstream 317750 59601875 ~ 59601961 (-)
G1758123 NA non-coding downstream 17656 59264169 ~ 59264513 (-)
G1758111 NA non-coding downstream 53824 59227951 ~ 59228345 (-)
G1758105 NA non-coding downstream 65583 59216085 ~ 59216586 (-)
G1758099 NA non-coding downstream 78243 59203045 ~ 59203926 (-)
G1758096 NA non-coding downstream 85902 59195814 ~ 59196267 (-)
G1758136 NA non-coding upstream 5858 59289983 ~ 59290229 (-)
G1758138 NA non-coding upstream 7451 59291576 ~ 59291911 (-)
G1758154 LOC100194703 non-coding upstream 22001 59306126 ~ 59306385 (-)
G1758156 NA non-coding upstream 22538 59306663 ~ 59306968 (-)
G1758194 NA non-coding upstream 56319 59340444 ~ 59340811 (-)
G1758095 NA other downstream 86679 59192432 ~ 59195490 (-)
G1757692 NA other downstream 476344 58800174 ~ 58805825 (-)
G1757130 NA other downstream 1239112 58042650 ~ 58043057 (-)
G1757074 NA other downstream 1373035 57908139 ~ 57909134 (-)
G1757073 NA other downstream 1379576 57902086 ~ 57902593 (-)
G1758845 NA other upstream 739642 60023767 ~ 60024903 (-)
G1758890 NA other upstream 838417 60122542 ~ 60123364 (-)
G1758915 NA other upstream 904285 60188410 ~ 60225587 (-)
LOC118942962 LOC106608456 other upstream 1074705 60352810 ~ 60370197 (-)
G1759103 NA other upstream 1244262 60528387 ~ 60528790 (-)

Expression

LOC110500775(dmrta1) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110500775(dmrta1) Expression in each Bioproject

Bar chart with 8 bars.
LOC110500775(dmrta1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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Co-expression Network