LOC118942960


Basic Information

Item Value
gene id LOC118942960
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59493489 ~ 59498544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038675.1
gccctatgaaactcccaatcacagccggttgtgatacagcctggaatcaaaccagggtctgtagtgatgcctctagcactgagatgcagtgccttagaccgctgcgccactcgggatacCTCAGTGGAAGCCAACAATCTGCTCCAGTTGGATGGTCGACCACTGAAAGCACAGACGTTCTACACTTCGGTGAAGCCCAATAGACAAAGTATGTTAAGCTTTGGTTGACATTTGAGCAAGCAAGAAATGGTAGTTATGCTGAGCTTATAAAAATGCACCTCTTCAATTGTCCGAATGACTTCAGGACCATCGACTGTCCGAAGTATCCCATCCACCAGAACCAGTGAGTTCGGATCAGTCTGATTATCTGTGCTCTGAGTCGGAGGGGAAACAGCTTGAAGTAGGCTCTACCTTCTAAAAGTGTTGAAAAGTACATATCTCCCATTTACAACACTGCACTAATCCATCACATTTTATCCCTGTAAAGTGTAACCTTTGTGTTTGCTTGTTTACGTCtctgtctcctaccctgttcccttTAACTCTGCTCCagttctccaggacctaggggGTTCTGTCCAACACCCAGACGTGGATCCACCTGCTGTCTTCCATTACCTGTTCTCCAGAACCTAGgggttctgcccaacacccagacgTGGATCCACCTGCTGTCCTCCattacctgctctccaggacctaagggttctgcccaacacccagacgtggatccacctgatgtcctTCATTACCAACCACCCTCCAACTTTTCATTACCTGATCTACAGCTgctgttattgtcatgttgtcattATCTGCTAAGAACGTTTCATTGATCTATCATACTGGGCACATAACATGTGAGATACACAGATTAACGAAAAAAACACTAGCACTGCAAACACTCAGAACAAAGAGAGCAGCAGTGCCTGGACTTTGCATTCTCCCTCTTCAAGTCCCCCTTctgagactggctgcctgttgagaacaagtgacaAACAGAACCTCCCACCCACACAGCACCCACCCAGGGACGGAGCCAGAGGGGTGCCACCCAAAAATGTAATTCGCTACTGGCAGTTTGATGCTGATTGACATCTCATTTCACCACTTGTTGAAAGAAGCATTTATTTTGACATTCGGCGGTGCATTTTTCAAAATCGAGGACGAGGAAAATAGAATATTAACGTTGTTTGCGAGATACAGAAGAATAAGAATAAGCAttcagaagaagaagagagaatattTCCACAGCTCCACGAGCTCGTTTCGCGATTGGCGAAAGCATCATATTTGAAACATGTCAAGATCCAGAGAAGAGGATCCAGTACAGCCGTGTTTGAAAACATTTCCCAGAACTCAGCATGGTACCAGGAAAAGGGCTTTCATCAGCTCCTGGTATAAGGACAATTCATGGCTTGAATATTCTGTTTGTCAAGATTTGAGTTATTGTTTCGCCTGTAGGCATTTTTCTCTGCCCAATACACCTGAATCTGCCTTCACATCACAGTCAGATTTCTCTGCCCAATACACCTGAATCTGCCTTCACATCACAGTCATGTTTCTCTGCCCAATACACCTGAATCTGCCTTCACATCACAGTCAGGTTTCTCTGCCCAATACACCTGAATCTGCCTTCACATCACAGTCATTTTTCACTGCCCAATACACCTGAATCTGCCTTCACATCACAGTCATGTTTCTCTGCCCAATACACCTGAATCTGCCTTCACATCACAGTCATGTTTCACTGCCCAATACACCTGAATCTGCCTTCACATCACAGTCATGTTTCTCTGCCCAATACACCTGAATCTGCCTTCACATCACAGTCATGTTTCTCTGCCCAATACACCTGAATCTGCCTTCACATCACAGTCATGTTTCTCTGCCCAATACACCTGAATCTGCCTTCACATCACAGTCATGTTTCTCTGCCCAATACATCTGAATCTGCCTTCACATCACAGTCATTTTTCACTGCCCAATATACCTGAATCTGCCTTCACATCACAGTCAGGTTTTTGTAAGTGGAAAAAGGCGCTGTTTAAAGGTTCTGGGTTTAAGCTCCATTCGAAGgcacagcagggtagcctagtggttagagtgttgtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcattctgcccctgaacaggcagttaacccactgttcctaggctgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaaaataatttaaaaaatcataTCAATGCTTGGAATCAGCATAAAAGGGCTATTGACAGCAACTTGTCAATATTAGATGTCATAAATGAGGACCGGAAAAAGAAAGTGGAGGAAAGCTGTACTTACATTAAAACAATTACAGATGTGCTCCTATTAACTGCCAATCAAAATATAGAGCAGAGAGGTCATTGAGAGTCTGATGACTCTCACAATAAGGGTCAATTTTTGACAATCTTAGAAGAAATAGCAAAGCATGACGCTCTCATAGAGAAAAGGATGAATGAATGTGGCAATGCTAAGTACACAAGCCACCAAATCCATAACGGAAGTTCTTGAGGGCTTAGCTGAGCTGGTACAAAGTGAAATAATaagagaagtaaaaaaaaaaatggaagttTTTAGTGTAATTGCAGATGAAACCAAAcattttaagaaaaaaataacaaatgtctTTAGTTGTGAAGTACTACTACAACGGAGCAAAATCTTTTTACACTTTCAGTCAGCTGAAAGCTTAGATGCAAAAATGATAATTGATTGCCttgaaaaacatggtctggactACAGAAATAATCTTGTGGGGCAAGGCTATGACGGTGCAGCCGTCGTGAGCGGAAAGCATTCTGGTGTGTCTGTACGGATTTAAAAACAGTGCAAGATTTGCATTTTATGTGCACTGTAATGCACATTGTTGTTTGAACGTGGTTCTTGCCGATGCTGTAAAATCAGTGCCCGAGGCAGTTCACTTTTTTGCTCTCCTGCAGAAGCTTTATAACTTTGTGTCGTACGTTCGTCTCAAGTGGCTTGCAGTTCAGAAAGAGCTGTATCAACAGCAGCAGCCCAGGGAACTACGGAGACTTACGGATGTAAGGTGGGCCTGCAGATACATGACATGCCGTAATCTGAGGGACAGGATTCCAGCAGTTCTGAGAGTGTTACAGGATAGCACACTTGAAAATAGTGGTGATAGATCAGTGGAGGCAAGGGGCCTTCTTTCTCAGATAGATGTACATTTCATAAAGCTTTTGGTTACCTTTTTGTAAAGTGCTTGGTGATGCCAAATGTCTTTCTGACATGCTCCAATCAAGCTCTCTTGACCTAGTGAGGGCTGTGGCTCTAGCAGGTgcccttacagacacattacaggactacagaAGGTAGGGTTACTATGGAGAACTATGGAAAGGGGTTGAAGAGATTACAGAGCACTGCAAAATAAGTGTACAAACAGTTGGTAAACTACAGCCTAAAACAAGCTTAGATTTCACAACTCATTGATGAGCACTGTAGGACAGAAAAATAGTGACCAACGTGATGGTGAGAGCTTCCAAAGAGCTATCTTTTTATCAGGTGCTTGACAGTCTCACAGCTGAGCTGCAGAGGTGTTTTTCAAAGAAGAATTGCGAGATAATGCAAAGGGTCCAGTCTCTCAACCCAAAGAGTACACCATTCTTGAATGAGGAGCCTCTGTTTGCCTTTGCTCAGACCTTTGAGTTAGATTTAGAGGACCTCAAACATGAGGTTCATCCAACCAAGTGACTTCTTGATAGGAGAGATAAAAGTGGAAGGAACAGACTGTCTACTCTCCTTGGCTTTGTTGTGTTTCTAGAACCTTTATAAAGAGGTCTTCCATGAGCTATTTTGACTTTGTAAGATTTCTGTTGTTACCCCAGTGCTTCTTGCGAGAGAAGCTTCTCAGCTCTAAAACGGATTAAAACCCCACTTTAGGACAGCAATGGTTGACGACAGGTTAAGTCACCTCGGAATTCTTAGTGTTGAGTCAAGGAGGGCACGCTCCCTCAACATGGATGAGTTTGTGAAACATTTAGCCAGTTCTCACCAGAACTGCAGAATTATGCTGTTTTAAATCTACCTAGGATAATTTGGCACTTAGGCGGTCCCTCTGATCATGATTAAAACCTGCTCTATGTACTAGCTAGTACACTGACATTCTAAAATGATACATCCAAAGGATATCACGTCACACAGATTTAATTTGGTCTTGATTAGGCCAATTCC

Function

NR:

description
zinc finger MYM-type protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038675.1 True 4274 mRNA 0.43 2 59493489 59498544
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110500773 LOC106608508 coding upstream 145344 59343608 ~ 59348145 (+)
elavl2 elavl2 coding upstream 589038 58851083 ~ 58904451 (+)
LOC110500780 caap1 coding upstream 969859 58512708 ~ 58523630 (+)
si:ch211-212k18.7 cd68 coding upstream 1029305 58456696 ~ 58464184 (+)
LOC110500903 LOC106608527 coding upstream 1052218 58411942 ~ 58441271 (+)
trnar-ucu-10 NA coding downstream 17877 59516421 ~ 59516493 (+)
trnar-ucu-11 NA coding downstream 18382 59516926 ~ 59516998 (+)
trnar-ucu-12 NA coding downstream 19533 59518077 ~ 59518149 (+)
trnar-ucu-13 NA coding downstream 20341 59518885 ~ 59518957 (+)
trnar-ucu-14 NA coding downstream 20964 59519508 ~ 59519580 (+)
G1758254 NA non-coding upstream 35182 59455432 ~ 59458307 (+)
G1758238 NA non-coding upstream 66301 59425968 ~ 59427188 (+)
G1758236 NA non-coding upstream 69277 59422251 ~ 59424212 (+)
G1758215 NA non-coding upstream 118914 59371537 ~ 59374575 (+)
G1758205 NA non-coding upstream 135945 59357166 ~ 59357544 (+)
G1758366 NA non-coding downstream 150714 59649258 ~ 59651646 (+)
LOC118942794 NA non-coding downstream 174902 59673446 ~ 59676937 (+)
G1758387 NA non-coding downstream 179148 59677692 ~ 59682011 (+)
G1758388 NA non-coding downstream 181701 59680245 ~ 59683805 (+)
G1758393 NA non-coding downstream 190067 59688611 ~ 59695262 (+)
G1757578 NA other upstream 806966 58683137 ~ 58686523 (+)
rwdd rwdd4 other upstream 1083410 58405236 ~ 58411726 (+)
G1756789 NA other upstream 1565245 57926480 ~ 57928244 (+)
G1755570 NA other upstream 2698915 56793731 ~ 56794574 (+)
G1755158 NA other upstream 3105867 56386407 ~ 56387622 (+)
G1758801 NA other downstream 823671 60322215 ~ 60326620 (+)
G1758818 NA other downstream 853102 60351646 ~ 60353092 (+)
G1758786 NA other downstream 860286 60358349 ~ 60359351 (+)
G1759168 LOC101154678 other downstream 1223614 60722158 ~ 60722472 (+)
G1759267 NA other downstream 1311658 60810202 ~ 60810620 (+)

Expression

LOC118942960 Expression in all Baseline Samples

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LOC118942960 Expression in each Bioproject

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LOC118942960 Expression in each Sample
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Co-expression Network