XLOC_036338 (st6galnac5b)


Basic Information

Item Value
gene id XLOC_036338
gene name st6galnac5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 17800380 ~ 17822259 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071014
AGTTCGGTGTGAAGATGACAGAGCGAGCAGAAGAAGAGCTGATGGAGGAAATACACTGTGCGTTTATAAAGCTGCTGTCTGTGAGGCTGAACAATTTGACTGCACGAAAAGACCCGAAATAAAACACTTCACAATATGAAGACGCGAACGCGTCATGGGATCATACTGATTGGTGTTGTGACTGTGCTTACAAGCTTATTGTTTGTCTACAACAGCACTTCTGCAGACACACCAGGGGATCAGCTGCATTCAGATGGACATCAGATAGATGCTGCAAGCCGACAGACATTCAGCTTAGAAGGTTACATCAGCATCATTGATCATAAGCCTCTCAAGACGCACTGCAGAAGTTGTGCCTTGGTGACGAGCTCTGGTCACATGACAGGAAGTGGTCGAGGTGCAGAGATCGACGAAACAGAGTGTGTCATTCGTATGAATGATGCCCCAACAAGAAGATACCAGAAGGATGTGGGCCAGCATACAAATCTCCGTGTGATTGCTCATTCCAGCATGCAGCGTGTGCTGCGAAACCGCTACGAGCTCCTCAACTCCAGCCAGGACACTTTCTTTATCTTCTGGGGGCCTGGAAACTACATGCGGAGAGACGGTAAAGGCCTTGTCTACAACAACCTGCGTCTGATGAAACAGTTGATGCCCAAACTTCAGGTGTACATCATCTCACGGCCGAAGATGCTGCAGTTTGATGAACTCTTCAAGAAGGAGACTGGAAAGGATAGAAAAAGGTCCAATTCATGGCTCAGCACGGGCTGGTTCACCATGGCAATCGCTATAGAGATGTGTGACAGAATCAACGTCTATGGCATGGTTCCTCCAGAGTTCTGCAAGTCTCCCCACACCAAGCCTTCAGTGCCATACCACTACTACGAGCCTTCGGGCACGGATGAATGCACCATGTATGTCACCCATGAGCAGGGCCGGCACGGCAGCCATCATCGCTTCATCACTGAGAAACGTGTCTTTGCCAAATGGGCACGCATGTTCAACATACACTTCTATCAGCCTGACTGGGGACCACCCCCTgtcataaacaacaacaacaacacaaactcATGAGGTTCAAactttggggatgttttcatttgaacattttaaatcaaacacaatgtgaatgaatgtttatgatGATGTACTTTCTAGCGAtttgacactgtaaaaaaaacatctttatactttctgaatatataaatatttcacaaataagTTAAACATGTCAAGAACATAGTATTCCTGATATATATTAGTGATTTAATTTTCACAGTGTACCCGGTGATCCACATTCGCTCAGAAAACTGGGTTACTGTATAATTATATCACATCTCTGTTTCCAGCAATTACTACTTGGGTATCTAGGCCATATTGTTCTCCATGTGTAGTTTCAATTATACATACAGCCTCAATAATCTTTGCAGCTTGATGAGTGTCAAGCACATGTTGCACATTTCTTCTCTTAATGGCGTCTAAAGAGGAGCATTTGCAAACTGCGCATTTTGCAAAGGACACTTTTATCAGAAGGCTCATTAACTTTGTCTGATTCAGTTTTTGCACATGTCAAAAGATGTTTATCTTCTAAATTAAGCTGTACATAGAGCTTTATGCTAATATTGTCATGCTGTTAGCAGCTCTGATCTTTCCTCAAAATCAGTTAGATACTTAGACAAACAGTCTCAATACGCGGTTTATTTGCTTATATTGTTTTATGACAtctcattttgttttatattgattTGTGCTAAGTTTTGATGCACTGACATAATGTTAGACATTGTTTAGTGTTCATTAGATGGTTTCGGTGAAGAATTCATCagcaggttttattttatttatttatttaaattttaaacagtAACATGTGAATTTGCAAGCCTTTTgaactattaaattaaataacaattcataaaaaaa

Function

symbol description
st6galnac5b Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; heart; integument; liver; and pleuroperitoneal region. Orthologous to human ST6GALNAC5 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5).

GO:

id name namespace
GO:0009311 oligosaccharide metabolic process biological_process
GO:0001574 ganglioside biosynthetic process biological_process
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0001665 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-25 Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; heart; integument; liver; and pleuroperitoneal region. Orthologous to human ST6GALNAC5 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5).

Ensembl:

ensembl_id ENSDARG00000057433

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071014 True 1923 mRNA 0.41 5 17800380 17822259

Neighbor

gene id symbol gene type direction distance location
XLOC_036337 si:ch211-150o23.2 coding downstream 9415 17787308 ~ 17790965 (-)
XLOC_036336 NA coding downstream 15469 17777860 ~ 17784911 (-)
XLOC_036334 prkcz coding downstream 28625 17554313 ~ 17771755 (-)
XLOC_036335 NA coding downstream 139186 17659597 ~ 17661194 (-)
XLOC_036333 skia coding downstream 283932 17395929 ~ 17516448 (-)
XLOC_036339 lhx8b coding upstream 99170 17921429 ~ 17926814 (-)
XLOC_036340 tnni3k coding upstream 136160 17958419 ~ 17980317 (-)
XLOC_036341 fpgt coding upstream 161110 17983369 ~ 17987549 (-)
XLOC_036342 acot11b coding upstream 171529 17993788 ~ 18010735 (-)
XLOC_036343 dio1 coding upstream 217311 18039570 ~ 18042089 (-)
XLOC_036332 BX465215.1 non-coding downstream 548026 17252239 ~ 17252354 (-)
XLOC_036322 NA non-coding downstream 1186717 16609622 ~ 16613663 (-)
XLOC_036355 AL844185.2 non-coding upstream 762434 18584693 ~ 18584807 (-)
XLOC_036356 NA non-coding upstream 771808 18594067 ~ 18599356 (-)
XLOC_036359 NA non-coding upstream 949348 18771607 ~ 18773009 (-)
XLOC_036374 NA non-coding upstream 2163583 19985842 ~ 19989233 (-)
XLOC_036380 NA non-coding upstream 2585394 20407653 ~ 20413849 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_04010515_04020837 ST6GALNAC5B coding CI01000010 null 4010515 ~ 4020898 (+)
bowfin (Amia calva) AMCG00004998 st6galnac5,LOC103370426 coding CM030140.1 CM030140.1 11510220 ~ 11525189 (-)