LOC110500793 (LOC106608484)


Basic Information

Item Value
gene id LOC110500793
gene name LOC106608484
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59747504 ~ 59756919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578327.2
ccataacgttggatgccaacAGCAGATAAAAACCACAGAAGAAGAGACCGACATTTTTTGAGGGGGGATTTGAGTTCATTCGACACAaaggtggggggaaaaaaacgagGCAAAACATTTCGATGGATACGCCAGCGTCATTAAGCtagctaatttaaaaaaaaaatatatatatatagcttgcTCTCATTCGACATGTCTGAAAGAAGACTCGCGAAGGTTTCAGAAGTGGAGCAGCACCCCGGAGACATCCATAGGATGCATGCTGTAATGGATTTTGTAAGAGTGAACTCTCACGGGCTAAACATTGGATATCTTGGTTTGGATTTTGTAACCCATGAATATTACTCGGGTGAAGACTTTTATGACAGTGACTATGAAGATCACCATGGTAGAAAGTCATACTGTGGATTTTCCAGAAACTTCTTATCCAACTCAAGCTCTTCATACCAACCCACCTCTCTGCATTACAATCAACCACCTAAAGCAGCCTCTAAACCTTCTCCAGATAATCCTGCCGTGAGAGCTCTTGAGGCGTTGAAAGAGTACCGAAAGAGCAAAGTCAAGGCTGAGAAGAAGAAGATTAAGAAAATTAAACAAAAAGAAAGAAGACTGCTTGAGAAGTTGGAAAAAGAAAAACAGAACCCAGTGACAGAAGTCAAGGTTGATGCAGAGAGTAAAGTGAATGAAAGTAAGTGTAACAAGACTAGTACCAGCGCTAAAGGGGCTCTCGCTCAGGGCCTGCAGGACTTGTCTGTTACTGATAGCGGAGACAGCAGCGGAGAGTCCAGCGACGCcgaggaggagagtgaagaggagagCATACACAGCAACTCGGAGGAACTGCAGCTGGATATGACCAGCAGTTTTGTATCCAAGGCTGCTGATATAGCAAAGCGACAACTTGAACAGAAGCCTAGGCCAGAATGGAAGGAGAAAAAGAAAACCAGTCAACCGAAGGAGAAACCAAATAAAGAAATGAAAGATGTACAAAAGAATTCTCCTGTACCCAACACTGAGGATATAGTTAAAAAGAGTACAGAGCTGGCTGtaatTGGTAATCAGTTTGCCAGCAGTGGACATTTTGACATGGCTGTTAAGTATTTTACGGATGCAATTAAGTACAACCCTGCAGAGTTTAGGCTGTTTGGCAACCGGTCCTTCTGTTATGAGAAGATCCAGGACTATGAGAAAGCCTTGGCTGATGCGGAGTTAGCCCTCAACATGAGTCCTGGCTGGGTCAAAGGCCTCTACAGAAAAGGCAGAGCTCTGGCAGGGCTGAAGAGATACGACGAAGCCGCCCAGGCCTTAAAGGAAGTGCTGCGTTTGGACAGCTCCTGTGCCGATGCCGCCCAGGAACTTATGAGGGTCCAGATAACACAGCTAATGGGGTTTGGCTTTTCCCGGGAACAGAGCTCAAATGCCTTAATAATTCACGGGAACGTGGAGAAATCACTTGAGGCACTGTCCAAAATATCTGGAATCCTCTATAACGGCAGTTATCCAACTGCAAGTGTTACCTATCCTGCCAAAGTGGACCGTGTCTACAGCACCTCTACAACATCAGAGTTCCCCTCGGCACCAAAACCTCATCAGGCCCAGCATTCACAAAGCCTTCAGAACAGACCCAAGACCAACACCCCCATAAGGAGATCGGAAAACTTTCCTGTAGCAACTAAATTATACCCTATTTGGGTTGGAAACTTGGTCCCTTCAGCAACGGAGGCTATGATTATAGAGAGATTTGAGGGAGCTGGGAAAATCCATAGTATTAAGCTTCTGCGCTCCAGACGATGTGCTTTTGTTAACTATTTGGACCCAGACTGTTGTGAGATTGCTTTGACTTTTCATGGGATGGAGCTCAATGGGTCCAAGATCTTAGTGCGCTACCCCGACAGGAACCCAACACACCTGGGCATAGCCAAGGATGCCCAGAAAGCTCAGGACCTGCCTTCCCATAGCACAAAGGAGTGCTTCTTCTGGAGGAACCTGGGCTGTAACAGGAGGCCAAACTGCCCCTACAGGCACATCCCAGAACACAATGGCGTTGACAAAGGCAAGGACAAGACCTCGGCCCAGTGAACCCGTCAACTTCAACTGGCCCACAGTCAAACTCGTGACTTAGCGCTGCTGGAAGAGGCTACTCATTCAGGATTTTAGATGGTTCATATTATGCTTTTAAGCAGTGATTCCCAAACAGTGCACACAATTTTGGATTGAGGCTATTTCCTAGCTGGAATTAAAAGGCTTTTAGAGgccaaaaatgtttgtttttatgtACACAGTTTATTTTTAAGATGTAAAGGTGTTTTTAGAACAGACAATCTTGTTTGGcacctttttttttttccccTACCCTGTCTACACCAAATGTTAGCTCTTGCTAAAGCCCATATGATGGATCATATTGGAGAAATGTCACTAATGACATTGACTTATCATTGTAGTCGGTGGTTTTCTCTGTTGCCTGCTAATGATGAATGTTGGTCCATATAAACGTATGTTGGGATCGTGTCACAGCTAATAAGTCAAGTAATTCTGCGTTATTCATTAACTGGTACAAATCATTTCCTGACACTTTTTTCTTTTTCCCTTTCGTGTTCCTGTAATTGCGGTCTTATAGTCTCATAGTTTCAATTTaacttcaacccccccccccaataaattgaCTACTTTGCATCAACGTGGAAAACGGATTTCATTGGCATAATCTCGTCACTGTAGggcatttttgtaaaaaaaaattaaaaaatcacTCTAAATTTACTGACATGGTGATTTCCCGTAGAATTTGTGTTATTTGACCACTAATATCtggtaaatcaaaactagacattgaactgacatctgtggcTAGTagtttcaaatgttatatttttcTTTTTCCTCGACTATTTTGTACTGATCAGTAAACCTGGCGGTCTATGGTGAAAATGTAACGTTCAAATTAAGATTTTTGTAATGTCTTCGGTTGAATTGGTTCAATAAATTACATTTCGCTTGGTCA

Function

NR:

description
tetratricopeptide repeat protein 31-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578327.2 True 3007 mRNA 0.43 18 59747504 59756919

Neighbor

gene id symbol gene type direction distance location
trnar-ucu-120 NA coding downstream 10185 59737141 ~ 59737451 (-)
trnar-ucu-119 NA coding downstream 17325 59730107 ~ 59730179 (-)
trnar-ucu-118 NA coding downstream 18676 59728756 ~ 59728828 (-)
trnar-ucu-117 NA coding downstream 20376 59727056 ~ 59727128 (-)
trnar-ucu-116 NA coding downstream 20725 59726707 ~ 59726779 (-)
mfsd8 mfsd8 coding upstream 107792 59864711 ~ 59880547 (-)
stl1 stl1 coding upstream 139454 59896373 ~ 59905625 (-)
LOC110500790 LOC106608490 coding upstream 161441 59918360 ~ 59941835 (-)
LOC100329196 LOC100329196 coding upstream 185018 59941937 ~ 59945075 (-)
trnay-gua-290 NA coding upstream 382172 60139091 ~ 60139177 (-)
G1758445 NA non-coding downstream 43493 59699294 ~ 59704011 (-)
G1758412 NA non-coding downstream 62171 59674010 ~ 59685333 (-)
G1758417 NA non-coding downstream 95835 59612668 ~ 59651669 (-)
G1758587 NA non-coding upstream 105038 59861957 ~ 59862860 (-)
G1758592 NA non-coding upstream 124408 59881327 ~ 59881710 (-)
G1758594 NA non-coding upstream 128349 59885268 ~ 59885664 (-)
G1758602 NA non-coding upstream 156030 59912949 ~ 59913181 (-)
G1758603 NA non-coding upstream 158717 59915636 ~ 59915998 (-)
G1758095 NA other downstream 552014 59192432 ~ 59195490 (-)
G1757692 NA other downstream 941679 58800174 ~ 58805825 (-)
G1757130 NA other downstream 1704447 58042650 ~ 58043057 (-)
G1757074 NA other downstream 1838370 57908139 ~ 57909134 (-)
G1757073 NA other downstream 1844911 57902086 ~ 57902593 (-)
G1758845 NA other upstream 266848 60023767 ~ 60024903 (-)
G1758890 NA other upstream 365623 60122542 ~ 60123364 (-)
G1758915 NA other upstream 431491 60188410 ~ 60225587 (-)
LOC118942962 LOC106608456 other upstream 601911 60352810 ~ 60370197 (-)
G1759103 NA other upstream 771468 60528387 ~ 60528790 (-)

Expression


Co-expression Network