XLOC_003636


Basic Information

Item Value
gene id XLOC_003636
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37995066 ~ 38000612 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008655
CAACCGTCCCAAACCCTGCCAGCAGGAAAGGGATCAAAACCTGGAGTCCAATAGAGAAGGACGTTTCCTTAAGTGGAGCCGGCGGCACCGGGCTTTGGTCCGTACTAGTGTCATCACTCTCATTGCTTTGGCTAGCGTTCTCCAAAAGCGCGTCCTCTTCCCTCTGGCCTTTCGCGTTGGCCCGACAGTCGAGGACCACCATGTCCGGAcgctcattctcctgatcaccgCAGTCCGGTAAGGAGGTCACCTCTGTGAGTTCGTACTCCCCGGGGGTCTGGGGTACCTCCTCTGGGCTGTCTGGTAGTATAACCGGATGGACCGACCCATTGGAGTGGTGGTACGCCGGCGGCACCCCCTCCTTCTTCATCTCTATCCTTTCCGTCCCGGTGGACATGTCGGACAGTTTGTCTTGATCTTTCAACCAGAGTACCATGCGGAGGCCTTAGGATGTAAAGGTGTCAATTAAGAAGAAATGAGCAAGCTTGAGGGTCTTACTTGAGTTTAGATCAGCCTGACCTCTGGAGATTTATCCCATTAAAGACGGCTGTTGCTGATGAAGGAGTCTACAGGTCGAGGAAGAGAGGCAGTATAAGCCTGAGCACTGAGAAGTCACAAGACATGGCTTTTTATCCTGAGAGCGATCTGGATGACGGGAAGCTGCTCTCAGACAGCCAACCGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008655 True 682 lncRNA 0.54 2 37995066 38000612

Neighbor

gene id symbol gene type direction distance location
XLOC_003635 si:ch211-112f3.4 coding upstream 71179 37905630 ~ 37923887 (+)
XLOC_003634 NA coding upstream 146355 37841257 ~ 37848711 (+)
XLOC_003633 sox13 coding upstream 163290 37768298 ~ 37831776 (+)
XLOC_003632 snrpe coding upstream 268865 37720552 ~ 37726201 (+)
XLOC_003631 kif17 coding upstream 317860 37652870 ~ 37677206 (+)
XLOC_003637 NA coding downstream 149276 38149888 ~ 38164754 (+)
XLOC_003638 CDK18 coding downstream 279842 38280454 ~ 38420819 (+)
XLOC_003639 mfsd4aa coding downstream 428707 38429319 ~ 38458406 (+)
XLOC_003640 AL929286.1 coding downstream 587839 38588451 ~ 38588566 (+)
XLOC_003641 NA coding downstream 603122 38603734 ~ 38876352 (+)
XLOC_003369 CR854846.2 misc upstream 21871984 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 25283070 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 25300803 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 25309467 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 25315038 12679732 ~ 12680028 (+)
XLOC_003628 CR936337.1 non-coding upstream 630506 37364446 ~ 37364560 (+)
XLOC_003626 CABZ01065569.1 non-coding upstream 780843 37214108 ~ 37214223 (+)
XLOC_003623 NA non-coding upstream 824628 37136800 ~ 37170438 (+)
XLOC_003620 BX248521.3 non-coding upstream 1000258 36994694 ~ 36994808 (+)
XLOC_003642 FO744851.1 non-coding downstream 802999 38803611 ~ 38803738 (+)
XLOC_003643 NA non-coding downstream 887270 38887882 ~ 38907795 (+)

Expression


Co-expression Network