mfsd8 (mfsd8)


Basic Information

Item Value
gene id mfsd8
gene name mfsd8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59864711 ~ 59880547 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958299.1
GGTAGGAAGTGTTGACAAATAGCGAATGTAAATCTTGTTTGCAATCAATGCTACTGTAGTCGTTGTACCTTAGCATAATTTGTCAGACTTCCAGAGTCATCTTTTAATTTAACATCATTATTTAATCGTACACATTTTTCAATTATGTGATGTCGTTTAAGTGAATCTAGCAGTCTAACTGTCATCCAAGTAGGACTAATGTTATCTCCCAGAGACATGGCGACTTAATTAATGACCCACCACACGTCTAGACACCTTTAAATTCGGTGACAGCACAACGTAAAATCAACGATGTCTCAATTTATGGATTCCGAAGAGAATACGCCATTGCTCAACGATGATTCTGGCAGTGATGACTCCCAAAATGATGAATACAAGAGTAGATGGCGGTCAATTCGTGTAATGTACTTCACAATGTTTCTAAGCAGCGTTGGTTTCACTATTGTCATCACGTCAGTTTGGCCGTATCTGCAAAAGATTGATGACAGTGCCAATGCTAGCTTCCTGGGCTGGGTGGTGGCGGCCTACAGCCTGGGCCAGATGCTGGCGTCCCCCCTCTTTGGGCTCTGGTCCAATCACAGGCCCAGGAGAGAACCATTGGCCTGCTCTATTTTCATCAACGTCACAGCCAACATCTACTACTCCTACGTCTACCTACCCACATCACAGAACAAGTACCACATGCTCATGTCTCGAGCTTTAGTCGGTTTTGGAGCAGGGAACGTAGCTGTTGTGAGGTCCTATGTTGCTGGAGCCACCTCACTGAAGGAGAGAAACAGTGCTATGGCTAACACAAGTGCCTGTCAGGCTCTGGGGTTCATTCTGGGTCCAGCTCTCCAGGCCGGTTTGTCATTCATTGGTGAACAAGGTGTTAGCGTGAAGGTCATTGACCTACAGCTGAATATGTACACCGCCCCAGCTCTACTGGCTGCATTATTTGGCGTCATCAATATCCTGCTCGTCGTGTTAGTGCTGAGGGAACACCAAGTTGACGACTATGGAAGACATATCAGAGCCATCAAttatgtgtctgaagAAAGAATGGATGTCAGTCAGGAAACAGAAGGGAATATTGATCACGTTGCTGTTTTGACCTCCAATGTTCTATTTTTCATCATCATGTTCATTTTCGCTGTCTTCGAGACCATAGCCACACCCCTATCTATGGACATGTTCTCTTGGACTAGGAAGGACGCAGTGCTCTACAACGGTATCATACTGTCCTGCGTCGGCTTTGAGTCCATCCTGGTGTTTCTACTTGTGAAGGTTCTCTCTCAAAGGATTGGTGATCGTCCTGTGCTCCTTGGAGGCTTGGCTATCATATTCTGTGGCTTCTTTGTCCTGCTCCCATGGGGGAACCATTACCCTGCCATCCAGTGGGCAGACCTCAAGAATTACACTGTCATCCACGAGACGTTTGCCCCAATCCCGGCGTTTGCCCCAACTCCGGTCTCCAACAGCTCCTTCGAGCCGACAGGCTGCCCTGCTGAACAGACATGGTGCCAGTATACCCCCGCCATTCACCTGGCACAGTTCCTTACCGCCGACGTCCTCATTGGAGCGGGCTACCCGGCCTGCAACGTGATATCCTACACGCTCTACTCCAAAATCCTAGGGTCCAAGCCTCAGGGTGTGTACATGGGGTGGTTGACAGCCTCTGGTAGCGGGGCCCGGACCCTGGGGCCCGTGTTCGTCTCCCAGGTGTACACAATCCTGGGTCCACGTTGGGCTTTCAGCCTCATCTGTGTCATGGTGCTTGGGGCCATACTTCTCCTGGGAGCCCTCTACCACAAACTCATCTCCTTCGCCGTGCGTCACGGCAGGATCCTGGAGTAAGAAATGTAGACCCCACACCCATTTTAGGGGGACTTTTTGTCGACTTTAATCCTAAAAATGAGAAGCTTTCACTAATGAAGTTGCTGCCGGGGATGTGGTGACAGTTTCACAATGCCTTATGGTTTGTCACTCAGGTTCGATATTGAAGATGTTTGGTCAAGAACGAAACGGTAGGGCCATTTTATTTTCTCCTGAGTTGAGATGAGAGTCGCTTCTCCAGTTGAAAAAGGAACTACTTATTTTACCACTAAACGTATTGCAGTAACTGCTACTTCTCTGATTTTGTATGGAAAAGCAATTTaaaaatgtgctctctctctctctctttttgaaaGTGTACTTGGCTTGTTTGGGGGGACCACTGATTTAAACATCGgttaatttgtttgtttttatgctGTAAATGGTTTGAATAATGGTCACTTTTAGTATTGAAAAATATATACGTGCATGTAGTTGAAGTGGCTGATTCCAACTGAGTCA
>XM_036958300.1
GGTAGGAAGTGTTGACAAATAGCGAATGTAAATCTTGTTTGCAATCAATGCTACTGTAGTCGTTGTACCTTAGCATAATTTGTCAGACTTCCAGAGTCATCTTTTAATTTAACATCATTATTTAATCGTACACATTTTTCAATTATGTGATGTCGTTTAAGTGAATCTAGCAGTCTAACTGTCATCCAAGTAGGACTAATGTTATCTCCCAGAGACATGGCGACTTAATTAATGACCCACCACACGTCTAGACACCTTTAAATTCGGTGACAGCACAACGTAAAATCAACGATGTCTCAATTTATGGATTCCGAAGAGAATACGCCATTGCTCAACGATGATTCTGGCAGGTTTCACTATTGTCATCACGTCAGTTTGGCCGTATCTGCAAAAGATTGATGACAGTGCCAATGCTAGCTTCCTGGGCTGGGTGGTGGCGGCCTACAGCCTGGGCCAGATGCTGGCGTCCCCCCTCTTTGGGCTCTGGTCCAATCACAGGCCCAGGAGAGAACCATTGGCCTGCTCTATTTTCATCAACGTCACAGCCAACATCTACTACTCCTACGTCTACCTACCCACATCACAGAACAAGTACCACATGCTCATGTCTCGAGCTTTAGTCGGTTTTGGAGCAGGGAACGTAGCTGTTGTGAGGTCCTATGTTGCTGGAGCCACCTCACTGAAGGAGAGAAACAGTGCTATGGCTAACACAAGTGCCTGTCAGGCTCTGGGGTTCATTCTGGGTCCAGCTCTCCAGGCCGGTTTGTCATTCATTGGTGAACAAGGTGTTAGCGTGAAGGTCATTGACCTACAGCTGAATATGTACACCGCCCCAGCTCTACTGGCTGCATTATTTGGCGTCATCAATATCCTGCTCGTCGTGTTAGTGCTGAGGGAACACCAAGTTGACGACTATGGAAGACATATCAGAGCCATCAAttatgtgtctgaagAAAGAATGGATGTCAGTCAGGAAACAGAAGGGAATATTGATCACGTTGCTGTTTTGACCTCCAATGTTCTATTTTTCATCATCATGTTCATTTTCGCTGTCTTCGAGACCATAGCCACACCCCTATCTATGGACATGTTCTCTTGGACTAGGAAGGACGCAGTGCTCTACAACGGTATCATACTGTCCTGCGTCGGCTTTGAGTCCATCCTGGTGTTTCTACTTGTGAAGGTTCTCTCTCAAAGGATTGGTGATCGTCCTGTGCTCCTTGGAGGCTTGGCTATCATATTCTGTGGCTTCTTTGTCCTGCTCCCATGGGGGAACCATTACCCTGCCATCCAGTGGGCAGACCTCAAGAATTACACTGTCATCCACGAGACGTTTGCCCCAATCCCGGCGTTTGCCCCAACTCCGGTCTCCAACAGCTCCTTCGAGCCGACAGGCTGCCCTGCTGAACAGACATGGTGCCAGTATACCCCCGCCATTCACCTGGCACAGTTCCTTACCGCCGACGTCCTCATTGGAGCGGGCTACCCGGCCTGCAACGTGATATCCTACACGCTCTACTCCAAAATCCTAGGGTCCAAGCCTCAGGGTGTGTACATGGGGTGGTTGACAGCCTCTGGTAGCGGGGCCCGGACCCTGGGGCCCGTGTTCGTCTCCCAGGTGTACACAATCCTGGGTCCACGTTGGGCTTTCAGCCTCATCTGTGTCATGGTGCTTGGGGCCATACTTCTCCTGGGAGCCCTCTACCACAAACTCATCTCCTTCGCCGTGCGTCACGGCAGGATCCTGGAGTAAGAAATGTAGACCCCACACCCATTTTAGGGGGACTTTTTGTCGACTTTAATCCTAAAAATGAGAAGCTTTCACTAATGAAGTTGCTGCCGGGGATGTGGTGACAGTTTCACAATGCCTTATGGTTTGTCACTCAGGTTCGATATTGAAGATGTTTGGTCAAGAACGAAACGGTAGGGCCATTTTATTTTCTCCTGAGTTGAGATGAGAGTCGCTTCTCCAGTTGAAAAAGGAACTACTTATTTTACCACTAAACGTATTGCAGTAACTGCTACTTCTCTGATTTTGTATGGAAAAGCAATTTaaaaatgtgctctctctctctctctttttgaaaGTGTACTTGGCTTGTTTGGGGGGACCACTGATTTAAACATCGgttaatttgtttgtttttatgctGTAAATGGTTTGAATAATGGTCACTTTTAGTATTGAAAAATATATACGTGCATGTAGTTGAAGTGGCTGATTCCAACTGAGTCA

Function

symbol description
mfsd8 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 7. Orthologous to human MFSD8 (major facilitator superfamily domain containing 8).

NR:

description
major facilitator superfamily domain-containing protein 8

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K12307 MSFD8, CLN7; MFS transporter, ceroid-lipofuscinosis neuronal protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958299.1 False 2319 mRNA 0.47 12 59864711 59880547
XM_036958300.1 True 2236 mRNA 0.47 11 59864711 59880547

Neighbor

gene id symbol gene type direction distance location
LOC110500793 LOC106608484 coding downstream 107792 59747504 ~ 59756919 (-)
trnar-ucu-120 NA coding downstream 127392 59737141 ~ 59737451 (-)
trnar-ucu-119 NA coding downstream 134532 59730107 ~ 59730179 (-)
trnar-ucu-118 NA coding downstream 135883 59728756 ~ 59728828 (-)
trnar-ucu-117 NA coding downstream 137583 59727056 ~ 59727128 (-)
stl1 stl1 coding upstream 15826 59896373 ~ 59905625 (-)
LOC110500790 LOC106608490 coding upstream 37813 59918360 ~ 59941835 (-)
LOC100329196 LOC100329196 coding upstream 61390 59941937 ~ 59945075 (-)
trnay-gua-290 NA coding upstream 258544 60139091 ~ 60139177 (-)
trnay-gua-291 NA coding upstream 259883 60140430 ~ 60140516 (-)
G1758587 NA non-coding downstream 1851 59861957 ~ 59862860 (-)
G1758445 NA non-coding downstream 160700 59699294 ~ 59704011 (-)
G1758412 NA non-coding downstream 179378 59674010 ~ 59685333 (-)
G1758428 NA non-coding downstream 226993 59634583 ~ 59637718 (-)
G1758592 NA non-coding upstream 780 59881327 ~ 59881710 (-)
G1758594 NA non-coding upstream 4721 59885268 ~ 59885664 (-)
G1758602 NA non-coding upstream 32402 59912949 ~ 59913181 (-)
G1758603 NA non-coding upstream 35089 59915636 ~ 59915998 (-)
G1758095 NA other downstream 669221 59192432 ~ 59195490 (-)
G1757692 NA other downstream 1058886 58800174 ~ 58805825 (-)
G1757130 NA other downstream 1821654 58042650 ~ 58043057 (-)
G1757074 NA other downstream 1955577 57908139 ~ 57909134 (-)
G1757073 NA other downstream 1962118 57902086 ~ 57902593 (-)
G1758845 NA other upstream 143220 60023767 ~ 60024903 (-)
G1758890 NA other upstream 241995 60122542 ~ 60123364 (-)
G1758915 NA other upstream 307863 60188410 ~ 60225587 (-)
LOC118942962 LOC106608456 other upstream 478283 60352810 ~ 60370197 (-)
G1759103 NA other upstream 647840 60528387 ~ 60528790 (-)

Expression


Co-expression Network