stl1 (stl1)


Basic Information

Item Value
gene id stl1
gene name stl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59896373 ~ 59905625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124195.1
ATGCTCCTTGGACAATCAATTTTGTTCGCCGCGCTGCAGGCCAGcctctttctggTTCCAGGTTATGGAATGTCAGAGATTCAGCGCAGGTTCCTGACGTGTGGTGATCCCAGCCTCCAGTGTGATCACGGTGTGATCATGGTGTATGGGGTCAAATTCAGCACTATTGAGTTGTCATCAAACGAGAGACCTAAAGCCTGCTCCGATACAGAGGCCTTCAACGGTGTGTCTAACAGGTGTGATGGAAATGAGAAGTGTGATGTGGCGACCTCCGGCAGTGTGTGTGACCTCTGTAACTCTGCATACCTGACTAATATCTTCCTGGACGTTACCTATGGCTGCCTGGAGAGCAAGAAGGTGACTACCTGTCATGGTGTGGTGCATTTGGAATGTGGAGATGGGGTGGTCTTTCTCCAGAAAGCACTCTATGGACGCATAGACAGCCAGACCTGTAGTCAGGGACGACCTCAGAGTGAGCTGACTAACACAAAGTGTTCCCAGGAAGGAACTCTGGCACTCTGGTCACAgagGTGTGACGGGAAGCAGACGTGTGAGGTGAACATGAGAGTGAATCAAATCTCGGACCCTTGTGTCGGAACCTACAAATATCTGGACGTCACCTACATCTGCCTTCCTGCTAAGACAAGTATCACCTGCGAGGGCTCAACCAGCTCCCTGGACTGTGgtaagggTGTGATAAAGGTGTTTCATGCTAACTACGGCCGTAGAGACGGCTCTACCTGTTCTGCTGGACGACACGAGCTCAGCAACCAGAACTGTCTGCAACCCAAAACCCTGGACGTTGTCAAACAATGGTGTGAGGGAAAGAGTCAGTGCACTGTGGGGCTTGATCCGGTCTTCGGGGACCCCTGCTATGGAACCTACAAATACCTGGAGGTTTCCTACACCTGTCTGGGAGGCTCCCCTACAGTGTAATGATGGCCTGGCTCGGCTGCTGCCACTTCCTGTCCGCCTCCACCGAAGAACTTCTTCGACTGGATGCCCTTTTTACTCTGGATTTACTCCATAATCAAACACGATGAACCCCTGATAAAATCAACTAATAAGAAACCAATCCATAAATCAACGTGCAAACTAGTGACTGAATGTTAATGTGTAGCCGGCTCATTTTCAGACCAGTGTTTTTTTTAGAGAACACAACCCTATGTTATTGATTTGGATGTCAAGAGATACGTTACAATTAAAATCAAATGAATGTGA
>XM_036956478.1
GAATGTGTTCCAGTAACAGCTCACGCGTTCAACTGTTATTCGTATCTCACTACGTGGGCAAAGCCATTCAATACAGTCAGACACTCAGAAGCTGTCTCTCCTATAGAGATCCCTGATAAAGTAGACAGAATGCTCCTTGGACAATCAATTTTGTTCGCCGCGCTGCAGGCCAGcctctttctggGTTATGGAATGTCAGAGATTCAGCGCAGGTTCCTGACGTGTGGTGATCCCAGCCTCCAGTGTGATCACGGTGTGATCATGGTGTATGGGGTCAAATTCAGCACTATTGAGTTGTCATCAAACGAGAGACCTAAAGCCTGCTCCGATACAGAGGCCTTCAACGGTGTGTCTAACAGGTGTGATGGAAATGAGAAGTGTGATGTGGCGACCTCCGGCAGTGTGTGTGACCTCTGTAACTCTGCATACCTGACTAATATCTTCCTGGACGTTACCTATGGCTGCCTGGAGAGCAAGAAGGTGACTACCTGTCATGGTGTGGTGCATTTGGAATGTGGAGATGGGGTGGTCTTTCTCCAGAAAGCACTCTATGGACGCATAGACAGCCAGACCTGTAGTCAGGGACGACCTCAGAGTGAGCTGACTAACACAAAGTGTTCCCAGGAAGGAACTCTGGCACTCTGGTCACAgagGTGTGACGGGAAGCAGACGTGTGAGGTGAACATGAGAGTGAATCAAATCTCGGACCCTTGTGTCGGAACCTACAAATATCTGGACGTCACCTACATCTGCCTTCCTGCTAAGACAAGTATCACCTGCGAGGGCTCAACCAGCTCCCTGGACTGTGgtaagggTGTGATAAAGGTGTTTCATGCTAACTACGGCCGTAGAGACGGCTCTACCTGTTCTGCTGGACGACACGAGCTCAGCAACCAGAACTGTCTGCAACCCAAAACCCTGGACGTTGTCAAACAATGGTGTGAGGGAAAGAGTCAGTGCACTGTGGGGCTTGATCCGGTCTTCGGGGACCCCTGCTATGGAACCTACAAATACCTGGAGGTTTCCTACACCTGTCTGGGAGGCTCCCCTACAGTGTAATGATGGCCTGGCTCGGCTGCTGCCACTTCCTGTCCGCCTCCACCGAAGAACTTCTTCGACTGGATGCCCTTTTTACTCTGGATTTACTCCATAATCAAACACGATGAACCCCTGATAAAATCAACTAATAAGAAACCAATCCATAAATCAACGTGCAAACTAGTGACTGAATGTTAATGTGTAGCCGGCTCATTTTCAGACCAGTGTTTTTTTTAGAGAACACAACCCTATGTTATTGATTTGGATGTCAAGAGATACGTTACAATTAAAATCAAATGAATGTGA

Function

symbol description
stl1 Enables solute:proton symporter activity. Involved in glycerol transport and transmembrane transport. Located in plasma membrane.

NR:

description
rhamnose binding lectin STL1 precursor

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124195.1 False 1221 mRNA 0.49 13 59896373 59905496
XM_036956478.1 True 1344 mRNA 0.49 13 59896373 59905625

Neighbor

gene id symbol gene type direction distance location
mfsd8 mfsd8 coding downstream 15826 59864711 ~ 59880547 (-)
LOC110500793 LOC106608484 coding downstream 139454 59747504 ~ 59756919 (-)
trnar-ucu-120 NA coding downstream 159054 59737141 ~ 59737451 (-)
trnar-ucu-119 NA coding downstream 166194 59730107 ~ 59730179 (-)
trnar-ucu-118 NA coding downstream 167545 59728756 ~ 59728828 (-)
LOC110500790 LOC106608490 coding upstream 12735 59918360 ~ 59941835 (-)
LOC100329196 LOC100329196 coding upstream 36312 59941937 ~ 59945075 (-)
trnay-gua-290 NA coding upstream 233466 60139091 ~ 60139177 (-)
trnay-gua-291 NA coding upstream 234805 60140430 ~ 60140516 (-)
trnay-gua-292 NA coding upstream 235469 60141094 ~ 60150736 (-)
G1758594 NA non-coding downstream 10709 59885268 ~ 59885664 (-)
G1758592 NA non-coding downstream 14663 59881327 ~ 59881710 (-)
G1758587 NA non-coding downstream 33513 59861957 ~ 59862860 (-)
G1758445 NA non-coding downstream 192362 59699294 ~ 59704011 (-)
G1758602 NA non-coding upstream 7324 59912949 ~ 59913181 (-)
G1758603 NA non-coding upstream 10011 59915636 ~ 59915998 (-)
G1758612 NA non-coding upstream 42336 59947961 ~ 59948533 (-)
G1758614 NA non-coding upstream 46842 59952467 ~ 59952746 (-)
G1758095 NA other downstream 700883 59192432 ~ 59195490 (-)
G1757692 NA other downstream 1090548 58800174 ~ 58805825 (-)
G1757130 NA other downstream 1853316 58042650 ~ 58043057 (-)
G1757074 NA other downstream 1987239 57908139 ~ 57909134 (-)
G1757073 NA other downstream 1993780 57902086 ~ 57902593 (-)
G1758845 NA other upstream 118142 60023767 ~ 60024903 (-)
G1758890 NA other upstream 216917 60122542 ~ 60123364 (-)
G1758915 NA other upstream 282785 60188410 ~ 60225587 (-)
LOC118942962 LOC106608456 other upstream 453205 60352810 ~ 60370197 (-)
G1759103 NA other upstream 622762 60528387 ~ 60528790 (-)

Expression


Co-expression Network