rnf175 (rnf175)


Basic Information

Item Value
gene id rnf175
gene name rnf175
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 62272235 ~ 62305912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958358.1
AGCGCAGCTGTCAGTTTCTAAGTCGAGTTGTGTGTTTAGCGAgccggctagctagttagctacaataACAACAGGAGATATGGCTGGACTTCAACCCCAGGGGGATCTCCTGAAAATGACTCACAGGGAGAACTGGAAaGTACAGCATGAGCGCCTGCACGTGAAGCACCGGGGCCATGAGGCCATGCATGCAGAGATGGTGCTCATCCTCATCGCTACGCTAGTGGTGGCTCAGATCGTACTGGTACAGTGGAAGCAGCGGCACCACCGCTCATACAATttggtTACCCTGCTCCAGATGTGGGTGGTTCCTCTCTATTTCACTATAAAACTCTACTGGTGGAGGTTTCTCTCCATGTGGGGAATGTTCTCTGTCATCACCAGCTATGTCGTCTTCAGAGCTACACGCAAACCACTGTCCTGTCGGACACCACGgATGGTGTATAAATGGTTTCTATTGATCTATAAGCTGAGCTATGCGGTGGGAGTGATTGGATACCTGGTCATCATGTTCACAATGTTCGGCTTCAATGTCTTCTTCAGgatCAAGGCTGAGGACTCCATGGATGTGGGCGTTATCATGCTGTTCTATGGTCTGTACTATGGAGTGATGGGACGGGACTTTGCTGAAATCTGCTCCGACTACATGGCCTCAACTATAGGGtactATAACATGGGAGGAATGCCGTCCAGGAGCTTGACAGATGATATCTGTGCGGTGTGTGGTCAGAAGATCCTCGTAGACGTGGATGAGGAGGGGATTATAGAAGATACCTACCAACTCTCCTGTAACCACATATTCCACGAGTTCTGTATCCGTGGCTGGTGCATTGTGGGTAAGAAGCAGACGTGTCCGTACTGCAACGAGAAGGTTGACTTGAAGAGGATGATGAACAATCCGTATCCTTTCATTGGCAGAGGCGACGAGAGCCACAGAACACCGGGATTGGCTGAATCTGAGAGCAtatcttacacacacacttattcttatcggtctttgaaattgttgcatgttgtgtttttaatattttttgttcggtataattgtaaaaaaaaaaaaatgctgtaaaacatgtataaaactataattttgatctGATGGATGGTCAGTGGTTGTTTATAATAATTgtaaattatagttttaaccatgttttgaggctattcAGTGTTTCTTTACAAtcatacattgtttacaaacaatggagtacAGCAGGCGTGCGCCCGCCCGCCATCGCG
>XM_036958359.1
AGCGCAGCTGTCAGTTTCTAAGTCGAGTTGTGTGTTTAGCGAgccggctagctagttagctacaataACAACAGGAGATATGGCTGGACTTCAACCCCAGGGGGATCTCCTGAAAATGACTCACAGGGAGAACTGGAAaGTACAGCATGAGCGCCTGCACGTGAAGCACCGGGGCCATGAGGCCATGCATGCAGAGATGGTGCTCATCCTCATCGCTACGCTAGTGGTGGCTCAGATCGTACTGGTACAGTGGAAGCAGCGGCACCACCGCTCATACAATttggtTACCCTGCTCCAGATGTGGGTGGTTCCTCTCTATTTCACTATAAAACTCTACTGGTGGAGGTTTCTCTCCATGTGGGGAATGTTCTCTGTCATCACCAGCTATGTCGTCTTCAGAGCTACACGCAAACCACTGTCCTGTCGGACACCACGgATGGTGTATAAATGGTTTCTATTGATCTATAAGCTGAGCTATGCGGTGGGAGTGATTGGATACCTGGTCATCATGTTCACAATGTTCGGCTTCAATGTCTTCTTCAGgatCAAGGCTGAGGACTCCATGGATGTGGGCGTTATCATGCTGTTCTATGGTCTGTACTATGGAGTGATGGGACGGGACTTTGCTGAAATCTGCTCCGACTACATGGCCTCAACTATAGGGtactATAACATGGGAGGAATGCCGTCCAGGAGCTTGACAGATGATATCTGTGCGGTGTGTGGTCAGAAGATCCTCGTAGACGTGGATGAGGAGGGGATTATAGAAGATACCTACCAACTCTCCTGTAACCACATATTCCACGAGTTCTGTATCCGTGGCTGGTGCATTGTGGGTAAGAAGCAGACGTGTCCGTACTGCAACGAGAAGGTTGACTTGAAGAGGATGATGAACAATCCatGGGAGAGAACACATGTCCTGTACGGGCAGCTCTTGGATTGGCTGAGATATCTTGTTGCCTGGCAACCCATAATCATCGGAATAGTCCACGGAATCAACTTCACCCTGGGGCTGGAGTAGTAGAACTCTGGGATGATGATCGCCTTGCAGAACTCCCTCCCGGAACTCCCTCCCCGGAACTCCCTCCCGGAACTCTCTCCCCGGAACTCCCTCCCCGGAACTCCCTCCCCGGAACTCCCTCCCGGAACTCTCTCCCCGGAACTCCCTCCCCGGAAC
>XM_036958361.1
AGCGCAGCTGTCAGTTTCTAAGTCGAGTTGTGTGTTTAGCGAgccggctagctagttagctacaataACAACAGGAGATATGGCTGGACTTCAACCCCAGGGGGATCTCCTGAAAATGACTCACAGGGAGAACTGGAAaGTACAGCATGAGCGCCTGCACGTGAAGCACCGGGGCCATGAGGCCATGCATGCAGAGATGGTGCTCATCCTCATCGCTACGCTAGTGGTGGCTCAGATCGTACTGGTACAGTGGAAGCAGCGGCACCACCGCTCATACAATttggtTACCCTGCTCCAGATGTGGGTGGTTCCTCTCTATTTCACTATAAAACTCTACTGGTGGAGGTTTCTCTCCATGTGGGGAATGTTCTCTGTCATCACCAGCTATGTCGTCTTCAGAGCTACACGCAAACCACTGTCCTGTCGGACACCACGgATGGTGTATAAATGGTTTCTATTGATCTATAAGCTGAGCTATGCGGTGGGAGTGATTGGATACCTGGTCATCATGTTCACAATGTTCGGCTTCAATGTCTTCTTCAGgatCAAGGCTGAGGACTCCATGGATGTGGGCGTTATCATGCTGTTCTATGGTCTGTACTATGGAGTGATGGGACGGGACTTTGCTGAAATCTGCTCCGACTACATGGCCTCAACTATAGGGtactATAACATGGGAGGAATGCCGTCCAGGAGCTTGACAGATGATATCTGTGCGGTGTGTGGTCAGAAGATCCTCGTAGACGTGGATGAGGAGGGGATTATAGAAGATACCTACCAACTCTCCTATTCCACGAGTTCTGTATCCGTGGCTGGTGCATTGTGGGTAAGAAGCAGACGTGTCCGTACTGCAACGAGAAGGTTGACTTGAAGAGGATGATGAACAATCCatGGGAGAGAACACATGTCCTGTACGGGCAGCTCTTGGATTGGCTGAGATATCTTGTTGCCTGGCAACCCATAATCATCGGAATAGTCCACGGAATCAACTTCACCCTGGGGCTGGAGTAGTAGAACTCTGGGATGATGATCGCCTTGCAGAACTCCCTCCCGGAACTCCCTCCCCGGAACTCCCTCCCGGAACTCTCTCCCCGGAACTCCCTCCCCGGAACTCCCTCCCCGGAACTCCCTCCCGGAACTCTCTCCCCGGAACTCCCTCCCCGGAAC
>XM_036958360.1
GCGCAGCTGTCAGTTTCTAAGTCGAGTTGTGTGTTTAGCGAgccggctagctagttagctacaataACAACAGGAGATATGGCTGGACTTCAACCCCAGaGTACAGCATGAGCGCCTGCACGTGAAGCACCGGGGCCATGAGGCCATGCATGCAGAGATGGTGCTCATCCTCATCGCTACGCTAGTGGTGGCTCAGATCGTACTGGTACAGTGGAAGCAGCGGCACCACCGCTCATACAATttggtTACCCTGCTCCAGATGTGGGTGGTTCCTCTCTATTTCACTATAAAACTCTACTGGTGGAGGTTTCTCTCCATGTGGGGAATGTTCTCTGTCATCACCAGCTATGTCGTCTTCAGAGCTACACGCAAACCACTGTCCTGTCGGACACCACGgATGGTGTATAAATGGTTTCTATTGATCTATAAGCTGAGCTATGCGGTGGGAGTGATTGGATACCTGGTCATCATGTTCACAATGTTCGGCTTCAATGTCTTCTTCAGgatCAAGGCTGAGGACTCCATGGATGTGGGCGTTATCATGCTGTTCTATGGTCTGTACTATGGAGTGATGGGACGGGACTTTGCTGAAATCTGCTCCGACTACATGGCCTCAACTATAGGGtactATAACATGGGAGGAATGCCGTCCAGGAGCTTGACAGATGATATCTGTGCGGTGTGTGGTCAGAAGATCCTCGTAGACGTGGATGAGGAGGGGATTATAGAAGATACCTACCAACTCTCCTGTAACCACATATTCCACGAGTTCTGTATCCGTGGCTGGTGCATTGTGGGTAAGAAGCAGACGTGTCCGTACTGCAACGAGAAGGTTGACTTGAAGAGGATGATGAACAATCCGTATCCTTTCATTGGCAGAGGCGACGAGAGCCACAGAACACCGGGATTGGCTGAATCTGAGAGCAtatcttacacacacacttattcttatcggtctttgaaattgttgcatgttgtgtttttaatattttttgttcggtataattgtaaaaaaaaaaaaatgctgtaaaacatgtataaaactataattttgatctGATGGATGGTCAGTGGTTGTTTATAATAATTgtaaattatagttttaaccatgttttgaggctattcAGTGTTTCTTTACAAtcatacattgtttacaaacaatggagtacAGCAGGCGTGCGCCCGCCCGCCATCGCG

Function

symbol description
rnf175 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane and endoplasmic reticulum membrane. Orthologous to human RNF175 (ring finger protein 175).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: RING finger protein 175-like, partial

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15698 RNF121_175; RING finger protein 121/175

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958358.1 False 1236 mRNA 0.46 8 62272235 62304568
XM_036958359.1 False 1177 mRNA 0.52 9 62272235 62305912
XM_036958361.1 False 1167 mRNA 0.52 9 62272235 62305912
XM_036958360.1 True 1197 mRNA 0.46 7 62272236 62304568

Neighbor

gene id symbol gene type direction distance location
fga LOC106608433 coding upstream 26060 62218616 ~ 62246175 (+)
LOC118942796 LOC106578155 coding upstream 195985 62068394 ~ 62076250 (+)
LOC118942970 NA coding upstream 243435 62027815 ~ 62032638 (+)
LOC110512266 NA coding upstream 278000 61992771 ~ 61994235 (+)
LOC118942795 NA coding upstream 284531 61984438 ~ 61987741 (+)
LOC118942972 LOC106592795 coding downstream 98994 62404906 ~ 62442938 (+)
LOC110530874 LOC106578150 coding downstream 150680 62456592 ~ 62465429 (+)
txk LOC105031518 coding downstream 245352 62551264 ~ 62608423 (+)
LOC110500820 LOC100706866 coding downstream 466457 62772369 ~ 62797382 (+)
LOC110500953 LOC106594432 coding downstream 574886 62873681 ~ 62903536 (+)
G1759885 NA non-coding upstream 90 62240331 ~ 62272145 (+)
G1759962 NA non-coding upstream 51186 62150615 ~ 62221049 (+)
G1759893 NA non-coding upstream 67465 62202716 ~ 62204770 (+)
G1759961 NA non-coding upstream 128312 62143711 ~ 62143923 (+)
G1759958 NA non-coding upstream 134822 62133616 ~ 62137413 (+)
G1759881 NA non-coding downstream 8273 62314185 ~ 62315322 (+)
G1759889 NA non-coding downstream 9729 62315641 ~ 62316895 (+)
G1759993 NA non-coding downstream 16394 62322306 ~ 62323591 (+)
G1759992 NA non-coding downstream 17926 62323838 ~ 62325749 (+)
G1759990 NA non-coding downstream 20590 62326502 ~ 62394178 (+)
G1759267 NA other upstream 1461615 60810202 ~ 60810620 (+)
G1759168 LOC101154678 other upstream 1549763 60722158 ~ 60722472 (+)
G1758786 NA other upstream 1912884 60358349 ~ 60359351 (+)
G1758818 NA other upstream 1919201 60351646 ~ 60353092 (+)
G1758801 NA other upstream 1945615 60322215 ~ 60326620 (+)
G1760504 NA other downstream 429139 62689513 ~ 62741819 (+)
G1760587 NA other downstream 505863 62811775 ~ 62814241 (+)
LOC110500813 tsc22d4 other downstream 685258 62991115 ~ 63050683 (+)
G1760800 NA other downstream 904221 63210133 ~ 63215753 (+)

Expression

rnf175(rnf175) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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rnf175(rnf175) Expression in each Bioproject

Bar chart with 20 bars.
rnf175(rnf175) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network