LOC110498011 (LOC106608403)


Basic Information

Item Value
gene id LOC110498011
gene name LOC106608403
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 63823210 ~ 63832447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958418.1
CGTAATCAGCCAACGGGGGCCCGGGGGCGGGTCTTAGATCCATCCTGTTTGATGCTCAGTCAACTATCCTCTCCGGAGAAACACACAGCAGCagcgacaacaacaaaaacaaccagACTCATTCTTGCAAACTTCATCTGGCCGGTAAATTCAGTCGTGTCGCCATGGTGAAAGGGGACGTTAACAAGCCAAAGGGCAAGACGTCAGCCTACGCCTTCTTCGTCCAGACCTGCCGGGAGGAACACAAGAGGAAACACCCCGAACAGTCGGTCAACTTCGCGGAGTTCTCCAAGCAGTgttcagagagatggaggGGTCTGACTGCGAATGATAAGCGTCGTTTTGAGGACATGGCGAAGAACGACAAGGTGCGTTATGAGAGGGACATGAGGGGGTACGTCCCCCCCAAGGGGATGGCCAAGAGTGGTAGGAGGAAGAAGGACCCCAACGCTCCCAAACGACCCCcgtCTGCcttctttgtgttctctgcagaGTTCCGTCCTACGGTCAAACAGGAGTTCCCAGGCTGTTCTATAGGAGAGACAGCTAAGAAGCTGGGGATCATGTGGGGTCAACAGACTCCAACCCAGAAACAGCCGTTTGAAGAGAAGGCTCTCCGACTGAGGGAGAAATACGACAAGgatatgGCTGCATACCGGTCCGGTGCGAACGTTAAGCGGGCCCCGATGCGACCCGGTCCCGGGGGCTCGTCTGGTATAATGCCCCACGCCGCGGCCGGTGGCGGAGATGACGATGATGACGACGACGATGACCTGGAGGACGATGACGATGAAGAGGACGATGATGATGACGAGTAGAGCTGTTAGTGTTGTGTTCCAGCCTGTAGGAGCAGTATGTGTGTTTTACCTCGCCCTCTAAGCTCCGCCCACCCGGGGTCACGGCAAGCTAAAACACACCCAGTTCCAGAGGAGGAATCTGATTGGTTGaaaggtgtgcgtgtgtgtgtgcctgtcagtGACCCTGGAGGACTGGCCCTAGGTCAGGGGTCAAAGGTTAGTTAGAGCTGGGCTGGACCAGACACAACCCGTAGGGGACTTATATTATCACGCGTAAATGATTACTCATCATCTTAAAAATCTGTAACCCTGGTAACCGTTGCTGTGGGCCAACATGTCCAATAGCAGAGCTCTGTATCTCCAGGAGGATGCTGCTGTTCCCAGGGTTGTGTGGTGTCCAGGCTCTTCAATATTATCACGTGTTGTAACTGttttttaaaacacactgttctgttttatttttttaattgaaacCATATGTAGAAACTGGCTTTTATAATACCATTTTTATGATTCTGAAAATGAACAATGttttatctgtg
>XM_036958419.1
AACGTAATCAGCCAACGGGGGCCCGGGGGCGGGTCTTAGATCCATCCTGTTTGATGCTCAGTCAACTATCCTCTCCGGAGAAACACACAGCAGCagcgacaacaacaaaaacaaccagACTCATTCTTGCAAACTTCATCTGGCCGGTAAATTCAGTCGTGTCGCCATGGTGAAAGGGGACGTTAACAAGCCAAAGGGCAAGACGTCAGCCTACGCCTTCTTCGTCCAGACCTGCCGGGAGGAACACAAGAGGAAACACCCCGAACAGTCGGTCAACTTCGCGGAGTTCTCCAAGCAGTgttcagagagatggaggGGTCTGACTGCGAATGATAAGCGTCGTTTTGAGGACATGGCGAAGAACGACAAGGTGCGTTATGAGAGGGACATGAGGGGGTACGTCCCCCCCAAGGGGATGGCCAAGAGTGGTAGGAGGAAGAAGGACCCCAACGCTCCCAAACGACCCCcgtCTGCcttctttgtgttctctgcagaGTTCCGTCCTACGGTCAAACAGGAGTTCCCAGGCTGTTCTATAGGAGAGACAGCTAAGAAGCTGGGGATCATGTGGGGTCaacagactatatatatatatataatgtatgtatTATCGTCTCCAGGCTGTTCTATAGGAGAGACAGCTAAGAAGCTGGGGATCATGTGGGGTCaacagactatatatatatatatataatgtatgtatTATCGT
>TU2017921
ATGCTCAGTCAACTATCCTCTCCGGAGAAACACACAGCAGCagcgacaacaacaaaaacaaccagACTCATTCTTGCAAACTTCATCTGGCCGGTAAATTCAGTCGTGTCGCCATGGTGAAAGGGGACGTTAACAAGCCAAAGGGCAAGACGTCAGCCTACGCCTTCTTCGTCCAGACCTGCCGGGAGGAACACAAGAGGAAACACCCCGAACAGTCGGTCAACTTCGCGGAGTTCTCCAAGCAGTgttcagagagatggaggGGTCTGACTGCGAATGATAAGCGTCGTTTTGAGGACATGGCGAAGAACGACAAGGTGCGTTATGAGAGGGACATGAGGGGGTACGTCCCCCCCAAGGGGATGGCCAAGAGTGGTAGGAGGAAGAAGGACCCCAACGCTCCCAAACGACCCCcgtCTGCcttctttgtgttctctgcagaGTTCCGTCCTACGGTCAAACAGGAGTTCCCAGGCTGTTCTATAGGAGAGACAGCTAAGAAGCTGGGGATCATGTGGGGTCaacagact
>TU2017922
ATGCTCAGTCAACTATCCTCTCCGGAGAAACACACAGCAGCagcgacaacaacaaaaacaaccagACTCATTCTTGCAAACTTCATCTGGCCGGTAAATTCAGTCGTGTCGCCATGGTGAAAGGGGACGTTAACAAGCCAAAGGGCAAGACGTCAGCCTACGCCTTCTTCGTCCAGACCTGCCGGGAGGAACACAAGAGGAAACACCCCGAACAGTCGGTCAACTTCGCGGAGTTCTCCAAGCAGTgttcagagagatggaggGGTCTGACTGCGAATGATAAGCGTCGTTTTGAGGACATGGCGAAGAACGACAAGGTGCGTTATGAGAGGGACATGAGGGGGTACGTCCCCCCCAAGGGGATGGCCAAGAGTGGTAGGAGGAAGAAGGACCCCAACGCTCCCAAACGACCCCcgtCTGCcttctttgtgttctctgcagaGTTCCGTCCTACGGTCAAACAGGAGTTCCCAGGCTGTTCTATAGGAGAGACAGCTAAGAAGCTGGGGATCATGTGGGGTCaacagactatatatatatatataatgtatgtatTATCGTCTCCAGGCTGTTCTATAGGAGAGACAGCTAAGAAGCTGGGGATCATGTGGGGTCaacagact

Function

NR:

description
high mobility group protein B2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958418.1 False 1339 mRNA 0.52 6 63823210 63832445
XM_036958419.1 False 709 mRNA 0.50 5 63827498 63832447
TU2017921 False 530 TUCP 0.54 5 63827531 63832394
TU2017922 True 623 TUCP 0.51 5 63827531 63832394

Neighbor

gene id symbol gene type direction distance location
LOC118942979 NA coding downstream 193351 63542492 ~ 63629859 (-)
si:ch1073-157b13.1 LOC106608406 coding downstream 215573 63578922 ~ 63607637 (-)
camta2 camta2 coding downstream 261100 63434675 ~ 63562110 (-)
LOC118942977 NA coding downstream 508229 63312403 ~ 63314981 (-)
LOC110500810 NA coding downstream 577706 63241114 ~ 63245504 (-)
LOC118942816 LOC106608393 coding upstream 254739 64087186 ~ 64089298 (-)
LOC110510319 NA coding upstream 267985 64100432 ~ 64124819 (-)
LOC110509411 LOC106562799 coding upstream 315607 64148054 ~ 64176432 (-)
LOC110517683 LOC106592125 coding upstream 372905 64205352 ~ 64223639 (-)
corin corin coding upstream 405085 64237532 ~ 64381441 (-)
G1761605 NA non-coding downstream 70117 63752759 ~ 63753093 (-)
G1761603 NA non-coding downstream 73823 63747964 ~ 63749387 (-)
G1761602 NA non-coding downstream 77220 63744767 ~ 63745990 (-)
G1761587 NA non-coding downstream 142541 63680417 ~ 63680669 (-)
G1761583 NA non-coding downstream 153464 63669519 ~ 63669746 (-)
G1761644 NA non-coding upstream 39593 63872040 ~ 63877590 (-)
G1761657 NA non-coding upstream 67446 63899893 ~ 63921285 (-)
G1761667 NA non-coding upstream 92476 63924923 ~ 63925291 (-)
G1761669 NA non-coding upstream 103381 63935828 ~ 63938874 (-)
G1761684 NA non-coding upstream 123732 63956179 ~ 63956625 (-)
G1761302 NA other downstream 769547 63050472 ~ 63053663 (-)
G1761295 NA other downstream 812550 63010187 ~ 63010660 (-)
LOC110500819 LOC106608419 other downstream 969331 62813988 ~ 62854106 (-)
G1761826 NA other upstream 584863 64417310 ~ 64418052 (-)
LOC110509409 LOC106593257 other upstream 758160 64590607 ~ 64647805 (-)
G1762080 NA other upstream 916057 64748504 ~ 64749274 (-)
G1762085 NA other upstream 921260 64753707 ~ 64754499 (-)

Expression


Co-expression Network