nfxl1 (nfxl1)


Basic Information

Item Value
gene id nfxl1
gene name nfxl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 64384916 ~ 64480987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958424.1
GGACTTGTAGTTTTTGACACACCGGCTCACCAGTAAGTGAAGCGACAACGACTCCTGTTAATCACTACAATTCCCAGCCTGCACCACAGTGGTTGGAGTTTGCGCAGTGAGTGGTCCTGTGTAGGCGAGCGGCGTGTCAGTGAACGGTCTGGTCATCACCATGGATCCGGCCTGGCGTCAGCGGGGTCGTGGGCGTGGTCAGCCACAGGGTCAAGCGTCGcgacctcagagagagagggcagcagCCCCGGCAGCAGAATCCCCTAAGACTCCTAGTGGTGTGTGGGCTggagatgggagggggagaggaggagatgggagagggaagaACGCTCCCACACAGCTACAGTCTGTTAACAGAGGGAAGAACATGGCAGCACCTTCACAacacaCTGCGTCGAGCCAATCCAAGTTTGAGGAGATCAGGAAGTCCAACCAGGCTGCTGCTCAGCGATTGGTTCAGAGCCAGTACAGCTCCTCCTCAGACGATGATGTCGATGATATAGTTGATGATGGTGGGAAGGTGGAGGGGAAGGATGGTAAACGAGGGAAGATTCTGGCCTCGACGCTCACCACCTACACGGACCAGACTGgTGGAGATGTGACAGACCTAGAGAGAACTCGTCAGTACCTGAGTGATGCGTTCCAGTCCGGTGCCATCACCTGCCTTATCTGTATCGCCTCCGTCAAGAGAACCCAGGCTgTATGGAGTTGTGCTGGTTGTTTCTGTCTGTTCCATATCCCCTGTATTCAGAAGTGGGCTAAGgactctgtctttctcctctcctctgtcactgaTGAAGACTTTGGGAAGAAAGATCACCCCTGGCCTTGTCCTAAATGTCGTTATGAGTACAGCCCCTCCCAGACCCCCAGTAGGTATGTCTGTTACTGTGGGAAGGTACAGGATCCTCCTCTGGACCCATGGCTGTTACCTCACTCCTGTGGGCTGGTCTGTGACAGAGCCTTGAACCCAGCCTGTGGACACCGCTGTCTGCTGCTCTGTCATCCAGGTCCCTGCCCACCTTGTCCTAAGATGGTATCAGTAAGCTGTATGTGTTCTAAGGCCATGCCCGTCCCGCGTCGCTGTAGCAACAAGCCCTGGAGCTGTCAGAAGACCTGTGGCAAGACACTGCCTTGTAAACAACACGCCTGTAACAACAGCTGTCACTCAGGTGTGTGTGAGCCGTGTCCGAGGGTCAGTGTCCAGAGGTGTGTCTGTGgacaggaggaggcagagagacagtgtgccaGCCCTGTGTGGCactgtcaacagCCGTGTGGTCGTCCTCTCTCCTGTGGTAATCATACATGTGAGAGAATGTGTCATTCAGGTCTGTGTGGGGCGTGTCCTCGATCTGGCAACAGAGCCTGTCCCTGCGGCAAGTCAAAGAGTTCTCTCCCCTGTACTGAGGATGTCCCTACCTGTGGTGACACCTGTGACAAGGTGATGGAATGTGGCTTACACACCTGTTCCATGAGGTGTCACAGAGGGGCCTGTGAAACCTGCAGACAGGAGGTAGAGAAGCAGTGTCGTTGTGGGAAGCACACACGTCTCATGCCGTGTCATAAGGAGTACCTTTGTGAGTCTAAATGCCCCAACACCAGAGGCTGTTCACGGCATCAGTGCAGGAGGAAGTGCTGCTCTGGTAACTGCCCACCATGTGACCAGAGCTGTGGACGATCGCTGGGCTGCCGAAACCACAAATGTCCCTCCGTCTGTCACCAAGGCAGCTGCTATCCCTGTCCAGAGACGGTggatgtgaagtgtgtgtgtgaatccacCTCTCTGACTGTTCCctgtgggagggagaggagtacCAAGCCCCCACGCTGTAAAGAACTGTGCAGGTCTCCCCCATCCTGCCACCACCCCAGCAGAGAGACCCATCGTTGTCACCCTGGTCCCTGCCCTCCCTGTCGCCAGGCCTGTCTCCTGGCCCTGAAACGATGCCAACACCCCTGTCCCCAACCCTGCCACGACCAGGTTATGGTGAAGACCAGCGACAGGGTCCTAGCAGGCCCGTGGGAGCAGTCGTCAGAACCTGCGTTTGTCCGTAAAGCTCTCCCCTGCCCGCCCTGCCTGGTCCCTATACCcacGGCCTGTCTTGGAGAGCATGAGgTGAGCCCGGTCCCATGCCACCGTCGAGGGCCTTTCTCCTGTAAGCGTGTCTGTGGTCGAACTCTGACCTGTGGTAACCATAGCTGCACCAAGGACTGTCACCGTGTCACCGCGACAACCAACAAACTACAGgcgggtccagagtgtgtggtgtgtgaggaGGGGTGTGTTAACCCTCGCCCCCCTGGCTGTCCCCACCCGTGCCTGTTGGCATGCCACCCAGGGTCGTGCCCCCCCTGCCAACAGATGACCCGACAACGCTGTCACTGCAAGATCTCCCTGCTCTACATCGACTGCCtGACGTTCAGAAGTGCGGAAGATGAGACTAAAGCTGATCTGGGGTCCTGTAAGAACCAATGTCCTAAACAGttGAGTTGTGGTCATCATTGTAAGGATCTGTGTCACCCAGGACATTGTGAGGATAAATGTTCCCACAGGGTCAAACTGAAGTGTCCCTGCAAGAGGATTAAAAAGGAGCTGCTGTGTTATAAAGCCAGACAGGACCAGACTCAGGTGGACTGTAATGACGCATGTACAGCCCTACGAAGAAAGGCCAATGAGGTGAAAGAAGCAGAAGAGAATGCAGccctggaggaagagaggaagaaacaACAGgCTGAGTTGGAAGCCTTTGAGAATCGTCAGAAGGGCAGACGTAAGAagcgagggaagagaggagaggaggaggcggaggGTGGTTGGAGGAGGTATAGAGTGGTCATGGTGTCTCTGGGTGGAGTTCTACTGGCTGCTGTCGCTTTCTATCTCATACAAAtggattagacacacacacaccatcacacacaccaacacacacacacacacacaccaacacacacacacacacacaccatcatacacacacaccaacacacacacaccaacacacacacaccatcataca
>XM_036958425.1
GGACTTGTAGTTTTTGACACACCGGCTCACCAGTAAGTGAAGCGACAACGACTCCTGTTAATCACTACAATTCCCAGCCTGCACCACAGTGGTTGGAGTTTGCGCAGTGAGTGGTCCTGTGTAGGCGAGCGGCGTGTCAGTGAACGGTCTGGTCATCACCATGGATCCGGCCTGGCGTCAGCGGGGTCGTGGGCGTGGTCAGCCACAGGGTCAAGCGTCGcgacctcagagagagagggcagcagCCCCGGCAGCAGAATCCCCTAAGACTCCTAGTGGTGTGTGGGCTggagatgggagggggagaggaggagatgggagagggaagaACGCTCCCACACAGCTACAGTCTGTTAACAGAGGGAAGAACATGGCAGCACCTTCACAacacaCTGCGTCGAGCCAATCCAAGTTTGAGGAGATCAGGAAGTCCAACCAGGCTGCTGCTCAGCGATTGGTTCAGAGCCAGTACAGCTCCTCCTCAGACGATGATGTCGATGATATAGTTGATGATGGTGGGAAGGTGGAGGGGAAGGATGGTAAACGAGGGAAGATTCTGGCCTCGACGCTCACCACCTACACGGACCAGACTGgTGGAGATGTGACAGACCTAGAGAGAACTCGTCAGTACCTGAGTGATGCGTTCCAGTCCGGTGCCATCACCTGCCTTATCTGTATCGCCTCCGTCAAGAGAACCCAGGCTgTATGGAGTTGTGCTGGTTGTTTCTGTCTGTTCCATATCCCCTGTATTCAGAAGTGGGCTAAGgactctgtctttctcctctcctctgtcactgaTGAAGACTTTGGGAAGAAAGATCACCCCTGGCCTTGTCCTAAATGTCGTTATGAGTACAGCCCCTCCCAGACCCCCAGTAGGTATGTCTGTTACTGTGGGAAGGTACAGGATCCTCCTCTGGACCCATGGCTGTTACCTCACTCCTGTGGGCTGGTCTGTGACAGAGCCTTGAACCCAGCCTGTGGACACCGCTGTCTGCTGCTCTGTCATCCAGGTCCCTGCCCACCTTGTCCTAAGATGGTATCAGTAAGCTGTATGTGTTCTAAGGCCATGCCCGTCCCGCGTCGCTGTAGCAACAAGCCCTGGAGCTGTCAGAAGACCTGTGGCAAGACACTGCCTTGTAAACAACACGCCTGTAACAACAGCTGTCACTCAGGTGTGTGTGAGCCGTGTCCGAGGGTCAGTGTCCAGAGGTGTGTCTGTGgacaggaggaggcagagagacagtgtgccaGCCCTGTGTGGCactgtcaacagCCGTGTGGTCGTCCTCTCTCCTGTGGTAATCATACATGTGAGAGAATGTGTCATTCAGGTCTGTGTGGGGCGTGTCCTCGATCTGGCAACAGAGCCTGTCCCTGCGGCAAGTCAAAGAGTTCTCTCCCCTGTACTGAGGATGTCCCTACCTGTGGTGACACCTGTGACAAGGTGATGGAATGTGGCTTACACACCTGTTCCATGAGGTGTCACAGAGGGGCCTGTGAAACCTGCAGACAGGAGGTAGAGAAGCAGTGTCGTTGTGGGAAGCACACACGTCTCATGCCGTGTCATAAGGAGTACCTTTGTGAGTCTAAATGCCCCAACACCAGAGGCTGTTCACGGCATCAGTGCAGGAGGAAGTGCTGCTCTGGTAACTGCCCACCATGTGACCAGAGCTGTGGACGATCGCTGGGCTGCCGAAACCACAAATGTCCCTCCGTCTGTCACCAAGGCAGCTGCTATCCCTGTCCAGAGACGGTggatgtgaagtgtgtgtgtgaatccacCTCTCTGACTGTTCCctgtgggagggagaggagtacCAAGCCCCCACGCTGTAAAGAACTGTGCAGGTCTCCCCCATCCTGCCACCACCCCAGCAGAGAGACCCATCGTTGTCACCCTGGTCCCTGCCCTCCCTGTCGCCAGGCCTGTCTCCTGGCCCTGAAACGATGCCAACACCCCTGTCCCCAACCCTGCCACGACCAGGTTATGGTGAAGACCAGCGACAGGGTCCTAGCAGGCCCGTGGGAGCAGTCGTCAGAACCTGCGTTTGTCCGTAAAGCTCTCCCCTGCCCGCCCTGCCTGGTCCCTATACCcacGGCCTGTCTTGGAGAGCATGAGgTGAGCCCGGTCCCATGCCACCGTCGAGGGCCTTTCTCCTGTAAGCGTGTCTGTGGTCGAACTCTGACCTGTGGTAACCATAGCTGCACCAAGGACTGTCACCGTGTCACCGCGACAACCAACAAACTACAGgcgggtccagagtgtgtggtgtgtgaggaGGGGTGTGTTAACCCTCGCCCCCCTGGCTGTCCCCACCCGTGCCTGTTGGCATGCCACCCAGGGTCGTGCCCCCCCTGCCAACAGATGACCCGACAACGCTGTCACTGCAAGATCTCCCTGCTCTACATCGACTGCCtGACGTTCAGAAGTGCGGAAGATGAGACTAAAGCTGATCTGGGGTCCTGTAAGAACCAATGTCCTAAACAGttGAGTTGTGGTCATCATTGTAAGGATCTGTGTCACCCAGGACATTGTGAGGATAAATGTTCCCACAGGGTCAAACTGAAGTGTCCCTGCAAGAGGATTAAAAAGGAGCTGCTGTGTTATAAAGCCAGACAGGACCAGACTGGTATATGTTATTAATACTGTAGTGTCTATGTCATGATGTAGGAGCTGCTGTGTTATAGATCCAGACAGGACCAGACTGGTATATGTTATTAATACTGTAGTGTCTATGTCATGATGTAGGAGCTGCTGTGTTATAAAGCCAGACAGGACCAGACTGGTATATGTTATTAATACTGTAGTGTCTATGTCATGATGTAGGAGCTGCTGTGTTATAGAGCCAGACAGGACCAGACTGGTATATGTTATTAATACTGTAGTGTCTATGTCATGATGTAGGAGCTGCTGTGTTATAGATCCAGACAGGACCAGACTGGTATATGTTATTAATACTGTAGTGTCTATGTCATGATGTAGGAGCTGCTGTGTTATAGATCCAGACAGGACCAGACTGGTATATGTTATTAATACTGTAGTGTCTATGTCATGATGTAGGAGCTGCTGTGTTATAGATCCAGACAGGACCAGACTGGTATATGTTATTAATACTGTAGTGTCTATGTCATGATGTAGGAGCTGCTGTGTTATAGAGCCAGACAGGACCAGACTGGTATATGTTATTAATACTGTAGTGTCTATGTCATGATGTAGGAGCTGCTGTGTTATAGATCCAGACAGGACCAGACTGGTATATGTTATTAATACTGTAGTGTCTATGTCATG
>XM_036958426.1
GGACTTGTAGTTTTTGACACACCGGCTCACCAGTAAGTGAAGCGACAACGACTCCTGTTAATCACTACAATTCCCAGCCTGCACCACAGTGGTTGGAGTTTGCGCAGTGAGTGGTCCTGTGTAGGCGAGCGGCGTGTCAGTGAACGGTCTGGTCATCACCATGGATCCGGCCTGGCGTCAGCGGGGTCGTGGGCGTGGTCAGCCACAGGGTCAAGCGTCGcgacctcagagagagagggcagcagCCCCGGCAGCAGAATCCCCTAAGACTCCTAGTGGTGTGTGGGCTggagatgggagggggagaggaggagatgggagagggaagaACGCTCCCACACAGCTACAGTCTGTTAACAGAGGGAAGAACATGGCAGCACCTTCACAacacaCTGCGTCGAGCCAATCCAAGTTTGAGGAGATCAGGAAGTCCAACCAGGCTGCTGCTCAGCGATTGGTTCAGAGCCAGTACAGCTCCTCCTCAGACGATGATGTCGATGATATAGTTGATGATGGTGGGAAGGTGGAGGGGAAGGATGGTAAACGAGGGAAGATTCTGGCCTCGACGCTCACCACCTACACGGACCAGACTGgTGGAGATGTGACAGACCTAGAGAGAACTCGTCAGTACCTGAGTGATGCGTTCCAGTCCGGTGCCATCACCTGCCTTATCTGTATCGCCTCCGTCAAGAGAACCCAGGCTgTATGGAGTTGTGCTGGTTGTTTCTGTCTGTTCCATATCCCCTGTATTCAGAAGTGGGCTAAGgactctgtctttctcctctcctctgtcactgaTGAAGACTTTGGGAAGAAAGATCACCCCTGGCCTTGTCCTAAATGTCGTTATGAGTACAGCCCCTCCCAGACCCCCAGTAGGTATGTCTGTTACTGTGGGAAGGTACAGGATCCTCCTCTGGACCCATGGCTGTTACCTCACTCCTGTGGGCTGGTCTGTGACAGAGCCTTGAACCCAGCCTGTGGACACCGCTGTCTGCTGCTCTGTCATCCAGGTCCCTGCCCACCTTGTCCTAAGATGGTATCAGTAAGCTGTATGTGTTCTAAGGCCATGCCCGTCCCGCGTCGCTGTAGCAACAAGCCCTGGAGCTGTCAGAAGACCTGTGGCAAGACACTGCCTTGTAAACAACACGCCTGTAACAACAGCTGTCACTCAGGTGTGTGTGAGCCGTGTCCGAGGGTCAGTGTCCAGAGGTGTGTCTGTGgacaggaggaggcagagagacagtgtgccaGCCCTGTGTGGCactgtcaacagCCGTGTGGTCGTCCTCTCTCCTGTGGTAATCATACATGTGAGAGAATGTGTCATTCAGGTCTGTGTGGGGCGTGTCCTCGATCTGGCAACAGAGCCTGTCCCTGCGGCAAGTCAAAGAGTTCTCTCCCCTGTACTGAGGATGTCCCTACCTGTGGTGACACCTGTGACAAGGTGATGGAATGTGGCTTACACACCTGTTCCATGAGGTGTCACAGAGGGGCCTGTGAAACCTGCAGACAGGAGGTAGAGAAGCAGTGTCGTTGTGGGAAGCACACACGTCTCATGCCGTGTCATAAGGAGTACCTTTGTGAGTCTAAATGCCCCAACACCAGAGGCTGTTCACGGCATCAGTGCAGGAGGAAGTGCTGCTCTGGTAACTGCCCACCATGTGACCAGAGCTGTGGACGATCGCTGGGCTGCCGAAACCACAAATGTCCCTCCGTCTGTCACCAAGGCAGCTGCTATCCCTGTCCAGAGACGGTggatgtgaagtgtgtgtgtgaatccacCTCTCTGACTGTTCCctgtgggagggagaggagtacCAAGCCCCCACGCTGTAAAGAACTGTGCAGGTCTCCCCCATCCTGCCACCACCCCAGCAGAGAGACCCATCGTTGTCACCCTGGTCCCTGCCCTCCCTGTCGCCAGGCCTGTCTCCTGGCCCTGAAACGATGCCAACACCCCTGTCCCCAACCCTGCCACGACCAGGTTATGGTGAAGACCAGCGACAGGGTCCTAGCAGGCCCGTGGGAGCAGTCGTCAGAACCTGCGTTTGTCCGTAAAGCTCTCCCCTGCCCGCCCTGCCTGGTCCCTATACCcacGGCCTGTCTTGGAGAGCATGAGgTGAGCCCGGTCCCATGCCACCGTCGAGGGCCTTTCTCCTGTAAGCGTGTCTGTGGTCGAACTCTGACCTGTGGTAACCATAGCTGCACCAAGGACTGTCACCGTGTCACCGCGACAACCAACAAACTACAGgcgggtccagagtgtgtggtgtgtgaggaGGGGTGTGTTAACCCTCGCCCCCCTGGCTGTCCCCACCCGTGCCTGTTGGCATGCCACCCAGGGTCGTGCCCCCCCTGCCAACAGATGACCCGACAACGCTGTCACTGCAAGATCTCCCTGCTCTACATCGACTGCCtGACGTTCAGAAGTGCGGAAGATGAGACTAAAGCTGATCTGGGGTCCTGTAAGAACCAATGTCCTAAACAGttGAGTTGTGGTCATCATTGTAAGGATCTGTGTCACCCAGGACATTGTGAGGATAAATGTTCCCACAGGGTCAAACTGAAGTGTCCCTGCAAGAGGATTAAAAAGGAGCTGCTGTGTTATAGATCCAGACAGGACCAGACTGGTATATGTTATTAGTACTGTAGTGTCTATGTCATGATGTAGGAGCTGCTGTGTTATAGATCCAGACAGGACCAGACTGGTATATGTTATTAATACTGTAGTGTCTATGTCATGATGTAGGAGCTGCTGTGTTATAGATCCAGACAGGACCAGACTGGTATATGTTATTAATACTGTAGTGTCTATGTCATGATGTAGGAGCTGCTGTGTTATAaaaccagacaggaccagactgGTATATGTTATTAATACTGTAGTGTCTATGTCATGATGTAGGAGCTGCTGTGTTATAGAGCCAGACAGGACCAGACTGGTATATGTTATTAATACTGTAGTGTCTATGTCATGATGTAGGAGCTGCTGTGTTATAGAGCCAGACAGGACCAGACTGGTATATGTTATTAA

Function

symbol description
nfxl1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human NFXL1 (nuclear transcription factor, X-box binding like 1).

NR:

description
NF-X1-type zinc finger protein NFXL1, partial

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15683 NFXL1, OZFP; NF-X1-type zinc finger protein NFXL1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958424.1 False 3026 mRNA 0.55 23 64384916 64480987
XM_036958425.1 False 3292 mRNA 0.53 21 64388159 64480987
XM_036958426.1 True 3037 mRNA 0.54 21 64388882 64480987

Neighbor

gene id symbol gene type direction distance location
corin corin coding downstream 3475 64237532 ~ 64381441 (-)
LOC110517683 LOC106592125 coding downstream 161277 64205352 ~ 64223639 (-)
LOC110509411 LOC106562799 coding downstream 208484 64148054 ~ 64176432 (-)
LOC110510319 NA coding downstream 260097 64100432 ~ 64124819 (-)
LOC118942816 LOC106608393 coding downstream 295618 64087186 ~ 64089298 (-)
cnga1b cnga1 coding upstream 2535 64483522 ~ 64518038 (-)
LOC118942817 LOC106608410 coding upstream 44910 64525897 ~ 64533370 (-)
LOC110509409 LOC106593257 coding upstream 110769 64590607 ~ 64647805 (-)
LOC118942818 LOC106608414 coding upstream 232835 64663711 ~ 64723784 (-)
LOC118942984 LOC106592811 coding upstream 295579 64776566 ~ 64790358 (-)
G1761814 NA non-coding downstream 5564 64378446 ~ 64379352 (-)
G1761792 NA non-coding downstream 66699 64317834 ~ 64318217 (-)
G1761790 NA non-coding downstream 70538 64313774 ~ 64314378 (-)
G1761783 NA non-coding downstream 101066 64281450 ~ 64283850 (-)
G1761930 NA non-coding upstream 21041 64502028 ~ 64516323 (-)
G1761942 NA non-coding upstream 66243 64547230 ~ 64553749 (-)
G1761943 NA non-coding upstream 71240 64552227 ~ 64552992 (-)
G1761944 NA non-coding upstream 72985 64553972 ~ 64554520 (-)
G1761957 NA non-coding upstream 97170 64578157 ~ 64579408 (-)
LOC110498011 LOC106608403 other downstream 552522 63823210 ~ 63832447 (-)
LOC118942979 NA other downstream 755069 63542492 ~ 63629859 (-)
camta2 camta2 other downstream 822863 63434675 ~ 63562110 (-)
G1761302 NA other downstream 1331253 63050472 ~ 63053663 (-)
G1762080 NA other upstream 267517 64748504 ~ 64749274 (-)
G1762085 NA other upstream 272720 64753707 ~ 64754499 (-)
G1762162 NA other upstream 375521 64856508 ~ 64857185 (-)

Expression


Co-expression Network