cnga1b (cnga1)


Basic Information

Item Value
gene id cnga1b
gene name cnga1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 64483522 ~ 64518038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958428.1
GTGATCCTCGAGACACACAGAGTTTTACCTGGAATATTTCAAACGCTTCCAATTTGTGGTGTGTGACGCGGGGTCAGGTCCGAGCCAAGGGGTTTCCATGACGATGAGCGAGCACCCTGGTTGGTGGACGGTACCACTGCAGGAGTTCTGTGtgtagaaagagaggaagggcaTGTCTTTAGCTAACTAGGGGCAGGAATAACCTAGCAACAGGAAACCAAGAGGAAGAACTTCCTGCGATGTCAGTGAAGGTGACCCCTGTGACCCCTGCTGGCCCCGCCCACCCCCAGCCCTGCTCTCCGCCACTCATCGTTCTGCAGGAtatggagggggagacagaggagaggggcgaGGTACACAGGTGTTTAAGGAGCTCCGTTGTGCAGGTTCCGttcaacatgaacaacagcaacagcaacgaGGAAgaGgaacagaagaagaagacaagtaaaaaggagaggaaagagaaaaaggagaggaaagagaaaaagGAGAAAGAAAAAcaggagaaaagggagagaaaggaacagaagaagaaggagaaagaggagaaggagttgaaggagaaagaggagaaggagaagaaggagaaagaggagaaggccAAAGCTGAAGCgcCTAAAGAGATCACGGTGATAGACCCAGCAGGTAACATGTATTATAACTGGCTCCTTGTCATCACCATTCCTGTAATGTACAACTGGACCCTCATCATAgccagggccaGTTTTGAGGAGCTCCAGACAGACTTTCTGATCTACTGGTTCATCATAGACTGTGTCTCTGATGTGGTCTACCTGGCAGATATGGTGTTCAGGACCAGGACAGgTTACCTGGAACAGGGTCTCCTGGTGAAGGATCAGAAGAAGCTGATAGATCGCTACATAAACAGTCTCCAGTACAAACTAGACCTGATCTCCATGATCCCTACTGACATCTTCTATGTGTACTTCGGCCTCAACTACCCCGAGATACGACTCAACAAGCTGTTCAGAATCAACAGGATGTTGGAGTTCTTTCAGAGGACAGAGACTAGGACCAACTTCCCCAACGTTCTGCGTATCTCCAACCTCGTCATGTACATCGTCATCATCATACACTGGAACGCTTGTCTCTACTACTCTTTctccaagGCGATTGGTTTCGGAGCTAATAAGTTTGTGTACCCCGACACGACGGACCCTGAGTTTGGTCGTTTGGTCCGGAAATATGCCTACAGCATGTACTGGTCGACCCTGACACTCACAACTATCGGAGAGACTCCTCCCCCTGTACAGAACTCTGAGTACTTCTTCGTCGTCACAGACTTCCTGGTTGGCGTGTTGATCTTTGCTACCATCGTCGGTAACGTCGGTTCCATGATCACCAACATGAACGCTGCCAGGGCAAACTTCCAGGCCAGGATAGATGCCATCAAACAGTACATGACTTTCAGAAAGGTCACCAAGGACCTGGAGAAGAGGGTGATCAAGTGGTTTGACTACCTGTGGACCAATAAGAAGGCAGTAGATGAGAGGGAGGTGCTAAAGTtccttcctgataaactcagggCTGAGATCGCTATCAACGTACACCTGGACACACTGAAGAAGgtgcgTATCTTTGCTGACTGTGAGGCTGGTCTCCTGGTAGAGTTGGTATTGAAGCTTCAGCCTCAGGTCTACAGTCCAGGTGATTACATCTGTAAGAAGGGAGACATCGGACGAGAGATGTACATCATCAAGGAAGGGAAGCTGGCCGTTGTCGCCGACGACGGGATCAAACAGTTCGTTGTCCTTAGCGACGGGAGCTACTTCGGGGAGATCAGTATTCTGTCCATAAAGGGTTCCAGGGCTGGAAACAGGAGGACTGCTAACATCAGGAGTGTTGGGTACTCTGACCTGTTCTGCCTCTCTAAAGACGACCTCATGGAGGCCCTGTCAGAGTATCCTGATGCTAAAGCCATGTTGGAGGAGAAGGGACGGCAGATCCTGATGAAGGACAACCTGCTGGACCTGGAGGTGGCGGCGCAGGGCCCGGACCCCAAGGACATggaagagaaggtggagaggaTGACAGCAACGCTGGAGTCCCTCCAGACGCGATACGCCCGGCTCCTCGCCGAACACGAGGCGGGCCAGAGCAGACTGAAACGCAGAGTCACCCGGCTAGAGAAGAAAGTGGTGGCTCCAGTCCAGGAGGTCGAGGAGATCGGGGTGGAGATGGGTACTGTGGCAACCACAGAGTAGAAGAAAGAGTCCCGCTGTTCTGTGTTCATTATGTTTTTTGAGGAAGGTCTTACCCACCTACTATAGTTGACTGACTGGAAGTCGCTCTGGGTAAGAGTGTTCGCTAAATTACCATAATGTAACGATGTCAGAGCAAGCAGAGCAACGTGGTTGGGAAAGGATCACTAAACAACAACAGCACGTGTCAATGGCATCCAGGTGGTAGAGGAATTAGAGTGACACCAAGAGTTGACTGACCTCTCAGTATCTTGAGTGGGTTGTTCCACAGGTGACCAAAAGAGCCGTAGGGGGGGGAAACAGCATAGTCTACTTGATATACAGTCTTTTCTGAATCGGTACAAAGAGAATGACAGATCAGAATAACTTTTTATTCTTGTTGTCTTGTTCTGTCCACCAAATATTCACCACCACTTGATGTATAACCTCTAAAAGCCCCATTATGAATAACCTTTAAAAGCCCCATGATGTAAAACCTTTAAAAGCCCCATGATGTATAACCTTTAAAAAGCCCCATGACCTTTTAAAAGCCCCATTATTAATAACCTTTTAAAAGCCCCATTATTAATAACCTTTTAAAAGCCCCATTATTAATATCCTTTTAAAAAGCCCCATGATGTATAACCTTTTAAAAGCCCCATTATTAATAACCTTTTAAAAGCCCCATGATGTATAACCTTTTAAAAGCCCCAAAATAAGCTATTGTTCTTATTTGTTGTTTAGAAAGTGATTTATTTTCTATTATTATGTAATATATTCTCACTACTAAAGTATCCAATGTCTGTAGGTGATATCTGATGTAAAATACTACTTCATTGATATGTGATATTTGATTtagtattattaataataatacctTCTTTATTATGCTGCACAGTAGAATTTAAATCATTTACAAACGATCCACAACATACAGTCGGCCTACAAACATTTTGTAAATTACAAACAATAAATTTATTACAGTATTTGAAGTGTCAAAATACTTATTGGATATGTTTAATCAATCAATACTTATTGGATATGTTTAATCAATCAATACTTATTGGATATGTTTAATCAATCAATACTTATTGGATATGTTTAATCAATCAATACTTATTGGATATGTTTAATCAATCAATACTTATTGGATATGTTTAATCAATCAATACTTATTGGATATGTTTAATCAATCAATACTTATTGGATATGTTTAATCAATCAATACTTATTGGATATGTTTAATCAATCAATACTTATTGGATATGTTTAATCAATCAATACTTATTGGATATGTTTAATCAATCAATACTTATTGGATATGTTTAATCAATCAATACTTATTGGATATGTTTAATCAATCAATACTTATTGGATATGTTTAATCAATCAATACTTATTGGATATGTTTAATCAATCAATCTTTGAACAATGGATAGGTGAATTGGTGGTTTGTTTGGATCAATATGTTGTTGGAAATAAAAGCTAGTTATTGTAAAGTATTGTTACCGTAGTGATGAGCGATGGTAAAGTATAAAGTTGAAGCAATAAACACAATAAAGACATTTTATAAGGAAGCACTGTCTCATTGTCATT

Function

symbol description
cnga1 Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to be involved in cation transmembrane transport and visual perception. Predicted to be located in membrane and photoreceptor outer segment. Implicated in retinitis pigmentosa and retinitis pigmentosa 49.

NR:

description
LOW QUALITY PROTEIN: cGMP-gated cation channel alpha-1

GO: NA

KEGG:

id description
K04948 CNGA1; cyclic nucleotide gated channel alpha 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958428.1 True 3800 mRNA 0.43 16 64483522 64518038

Neighbor

gene id symbol gene type direction distance location
nfxl1 nfxl1 coding downstream 2535 64384916 ~ 64480987 (-)
LOC118942981 NA coding downstream 95714 64386561 ~ 64387808 (-)
corin corin coding downstream 102081 64237532 ~ 64381441 (-)
LOC110517683 LOC106592125 coding downstream 259883 64205352 ~ 64223639 (-)
LOC110509411 LOC106562799 coding downstream 307090 64148054 ~ 64176432 (-)
LOC118942817 LOC106608410 coding upstream 7859 64525897 ~ 64533370 (-)
LOC110509409 LOC106593257 coding upstream 73718 64590607 ~ 64647805 (-)
LOC118942818 LOC106608414 coding upstream 195784 64663711 ~ 64723784 (-)
LOC118942984 LOC106592811 coding upstream 258528 64776566 ~ 64790358 (-)
LOC118942819 LOC106595717 coding upstream 405451 64923489 ~ 64930766 (-)
G1761796 NA non-coding downstream 19866 64462005 ~ 64463656 (-)
G1761830 NA non-coding downstream 53167 64426974 ~ 64430355 (-)
G1761822 NA non-coding downstream 77185 64405871 ~ 64406337 (-)
G1761818 NA non-coding downstream 83358 64399506 ~ 64400164 (-)
G1761942 NA non-coding upstream 29192 64547230 ~ 64553749 (-)
G1761943 NA non-coding upstream 34189 64552227 ~ 64552992 (-)
G1761944 NA non-coding upstream 35934 64553972 ~ 64554520 (-)
G1761957 NA non-coding upstream 60119 64578157 ~ 64579408 (-)
G1761958 NA non-coding upstream 62459 64580497 ~ 64581193 (-)
G1761826 NA other downstream 65470 64417310 ~ 64418052 (-)
LOC110498011 LOC106608403 other downstream 651128 63823210 ~ 63832447 (-)
LOC118942979 NA other downstream 853675 63542492 ~ 63629859 (-)
camta2 camta2 other downstream 921469 63434675 ~ 63562110 (-)
G1762080 NA other upstream 230466 64748504 ~ 64749274 (-)
G1762085 NA other upstream 235669 64753707 ~ 64754499 (-)
G1762162 NA other upstream 338470 64856508 ~ 64857185 (-)

Expression


Co-expression Network