LOC118942817 (LOC106608410)


Basic Information

Item Value
gene id LOC118942817
gene name LOC106608410
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 64525897 ~ 64533370 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956538.1
ATGTTGTGTGTATCGACCAGTCAGCTGGGCCAAGTGGACGGTGCTGTCCACCACAGGGTCAGCTGGACCAGGTGGACGGTGCTGTCCACCACAGGGTCAGCTGGACCAGGTGGACGGTGCTCTCCACCACAGGGTCAGCTGGACCAGGTGGACGGTGCTGTCCACCACAAGGTTAAAGATACGCCTGCGGCCCCTGTAGAGGAAACTCCCTTGGTGACAGATCCACAGTCCCAGCTCCAGCCATACGACCCACAGCCCTACCCCTACTACCCACAGCCATACCCCTACGACCCACTCACAACACAGCTACTGCCCAACCTGCAAACACTCACACCTGGGGAACAGGCACAGTCGTCGTCTCTGAGTTCTGAAGAGGAAGCTTCACCTCCTGTGGTCTACACCAGGGTGATGTTGCCTCCTGTGGTGCCCGCGTATCAGAGCCAGGGGCTGAGTGtggaccctaaccctgaaccttcagtcttaacccctgaccccttacctctgacccctgaccccggCCACGCCCACCTGGGGAACCCCCCGACTGTAGCCCCGATGGCCTCGGGGGGCCAGGGGACCCCCAAACCTGAGGTGGGGGGTGCGGTAGGGGTACAGATGAAGAGTGCCGTGGAGAAGGGTACAGAGGGGGCtgtgggggtgagagaggggggaggggtacaGATGAAGAGTGGAGGTGCAGGTGACCCCTGTCCCTTGGAGAAGAGCCCCCCAGTAAGAGAGACCCAAACTTCTACCCATTCTGATCCTCGCCTCACACATCGTCTCACCCCCAGGCAGCTCCCCATCCGAGCTAGGAGCGATGGGAGGAGAGCCTGAGGAGGAGGGggttttctttccctctcctacctctcctacgtctcctcctctctccctctccctctcctacctctctccctctcctcctctcctcctctctc

Function

NR:

description
PREDICTED: leucine-rich repeat extensin-like protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956538.1 True 938 mRNA 0.61 5 64525897 64533370

Neighbor

gene id symbol gene type direction distance location
cnga1b cnga1 coding downstream 7859 64483522 ~ 64518038 (-)
nfxl1 nfxl1 coding downstream 44910 64384916 ~ 64480987 (-)
LOC118942981 NA coding downstream 138089 64386561 ~ 64387808 (-)
corin corin coding downstream 144456 64237532 ~ 64381441 (-)
LOC110517683 LOC106592125 coding downstream 302258 64205352 ~ 64223639 (-)
LOC110509409 LOC106593257 coding upstream 58386 64590607 ~ 64647805 (-)
LOC118942818 LOC106608414 coding upstream 180452 64663711 ~ 64723784 (-)
LOC118942984 LOC106592811 coding upstream 243196 64776566 ~ 64790358 (-)
LOC118942819 LOC106595717 coding upstream 390119 64923489 ~ 64930766 (-)
G1761930 NA non-coding downstream 9574 64502028 ~ 64516323 (-)
G1761796 NA non-coding downstream 62241 64462005 ~ 64463656 (-)
G1761830 NA non-coding downstream 95542 64426974 ~ 64430355 (-)
G1761822 NA non-coding downstream 119560 64405871 ~ 64406337 (-)
G1761818 NA non-coding downstream 125733 64399506 ~ 64400164 (-)
G1761942 NA non-coding upstream 13860 64547230 ~ 64553749 (-)
G1761943 NA non-coding upstream 18857 64552227 ~ 64552992 (-)
G1761944 NA non-coding upstream 20602 64553972 ~ 64554520 (-)
G1761957 NA non-coding upstream 44787 64578157 ~ 64579408 (-)
G1761958 NA non-coding upstream 47127 64580497 ~ 64581193 (-)
G1761826 NA other downstream 107845 64417310 ~ 64418052 (-)
LOC110498011 LOC106608403 other downstream 693503 63823210 ~ 63832447 (-)
LOC118942979 NA other downstream 896050 63542492 ~ 63629859 (-)
camta2 camta2 other downstream 963844 63434675 ~ 63562110 (-)
G1762080 NA other upstream 215134 64748504 ~ 64749274 (-)
G1762085 NA other upstream 220337 64753707 ~ 64754499 (-)
G1762162 NA other upstream 323138 64856508 ~ 64857185 (-)

Expression


Co-expression Network